Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23895

Experiment: Benzalkonium Chloride 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_23890 and AO356_23895 are separated by 257 nucleotidesAO356_23895 and AO356_23900 are separated by 100 nucleotides AO356_23890: AO356_23890 - universal stress protein, at 5,355,684 to 5,356,607 _23890 AO356_23895: AO356_23895 - hypothetical protein, at 5,356,865 to 5,358,115 _23895 AO356_23900: AO356_23900 - universal stress protein, at 5,358,216 to 5,359,127 _23900 Position (kb) 5356 5357 5358 5359Strain fitness (log2 ratio) -2 -1 0 1at 5355.935 kb on - strand, within AO356_23890at 5355.989 kb on - strand, within AO356_23890at 5356.018 kb on + strand, within AO356_23890at 5356.018 kb on + strand, within AO356_23890at 5356.019 kb on - strand, within AO356_23890at 5356.024 kb on + strand, within AO356_23890at 5356.024 kb on + strand, within AO356_23890at 5356.024 kb on + strand, within AO356_23890at 5356.024 kb on + strand, within AO356_23890at 5356.024 kb on + strand, within AO356_23890at 5356.024 kb on + strand, within AO356_23890at 5356.025 kb on - strand, within AO356_23890at 5356.025 kb on - strand, within AO356_23890at 5356.025 kb on - strand, within AO356_23890at 5356.025 kb on - strand, within AO356_23890at 5356.102 kb on + strand, within AO356_23890at 5356.102 kb on + strand, within AO356_23890at 5356.102 kb on + strand, within AO356_23890at 5356.103 kb on - strand, within AO356_23890at 5356.103 kb on - strand, within AO356_23890at 5356.103 kb on - strand, within AO356_23890at 5356.499 kb on + strand, within AO356_23890at 5356.500 kb on - strand, within AO356_23890at 5356.602 kb on - strandat 5356.768 kb on - strandat 5357.091 kb on - strand, within AO356_23895at 5357.091 kb on - strand, within AO356_23895at 5357.206 kb on - strand, within AO356_23895at 5357.354 kb on + strand, within AO356_23895at 5357.682 kb on + strand, within AO356_23895at 5357.682 kb on + strand, within AO356_23895at 5357.683 kb on - strand, within AO356_23895at 5357.683 kb on - strand, within AO356_23895at 5357.683 kb on - strand, within AO356_23895at 5357.690 kb on + strand, within AO356_23895at 5357.690 kb on + strand, within AO356_23895at 5357.690 kb on + strand, within AO356_23895at 5357.690 kb on + strand, within AO356_23895at 5358.242 kb on - strandat 5358.323 kb on + strand, within AO356_23900at 5358.323 kb on + strand, within AO356_23900at 5358.323 kb on + strand, within AO356_23900at 5358.323 kb on + strand, within AO356_23900at 5358.323 kb on + strand, within AO356_23900at 5358.323 kb on + strand, within AO356_23900at 5358.323 kb on + strand, within AO356_23900at 5358.324 kb on - strand, within AO356_23900at 5358.324 kb on - strand, within AO356_23900at 5358.324 kb on - strand, within AO356_23900at 5358.324 kb on - strand, within AO356_23900at 5358.522 kb on + strand, within AO356_23900at 5358.523 kb on - strand, within AO356_23900at 5358.523 kb on - strand, within AO356_23900at 5358.777 kb on - strand, within AO356_23900at 5358.777 kb on - strand, within AO356_23900at 5358.822 kb on + strand, within AO356_23900at 5358.870 kb on + strand, within AO356_23900at 5358.870 kb on + strand, within AO356_23900at 5358.870 kb on + strand, within AO356_23900at 5358.871 kb on - strand, within AO356_23900

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml
remove
5,355,935 - AO356_23890 0.27 -0.1
5,355,989 - AO356_23890 0.33 -0.6
5,356,018 + AO356_23890 0.36 -0.1
5,356,018 + AO356_23890 0.36 -1.2
5,356,019 - AO356_23890 0.36 -0.1
5,356,024 + AO356_23890 0.37 +0.0
5,356,024 + AO356_23890 0.37 -1.0
5,356,024 + AO356_23890 0.37 -1.0
5,356,024 + AO356_23890 0.37 -0.1
5,356,024 + AO356_23890 0.37 -0.7
5,356,024 + AO356_23890 0.37 +0.3
5,356,025 - AO356_23890 0.37 -1.1
5,356,025 - AO356_23890 0.37 -0.7
5,356,025 - AO356_23890 0.37 -0.0
5,356,025 - AO356_23890 0.37 -0.8
5,356,102 + AO356_23890 0.45 -0.7
5,356,102 + AO356_23890 0.45 -0.7
5,356,102 + AO356_23890 0.45 -0.1
5,356,103 - AO356_23890 0.45 +0.1
5,356,103 - AO356_23890 0.45 -0.5
5,356,103 - AO356_23890 0.45 +0.4
5,356,499 + AO356_23890 0.88 -0.6
5,356,500 - AO356_23890 0.88 -0.7
5,356,602 - +0.8
5,356,768 - -0.4
5,357,091 - AO356_23895 0.18 +1.1
5,357,091 - AO356_23895 0.18 +0.5
5,357,206 - AO356_23895 0.27 +1.3
5,357,354 + AO356_23895 0.39 -0.3
5,357,682 + AO356_23895 0.65 +0.0
5,357,682 + AO356_23895 0.65 -0.2
5,357,683 - AO356_23895 0.65 -0.2
5,357,683 - AO356_23895 0.65 +0.1
5,357,683 - AO356_23895 0.65 +0.7
5,357,690 + AO356_23895 0.66 +0.3
5,357,690 + AO356_23895 0.66 -0.7
5,357,690 + AO356_23895 0.66 -0.1
5,357,690 + AO356_23895 0.66 -0.3
5,358,242 - +0.0
5,358,323 + AO356_23900 0.12 -1.3
5,358,323 + AO356_23900 0.12 -1.8
5,358,323 + AO356_23900 0.12 -0.8
5,358,323 + AO356_23900 0.12 -0.2
5,358,323 + AO356_23900 0.12 -1.2
5,358,323 + AO356_23900 0.12 -0.0
5,358,323 + AO356_23900 0.12 +0.5
5,358,324 - AO356_23900 0.12 +1.2
5,358,324 - AO356_23900 0.12 -0.3
5,358,324 - AO356_23900 0.12 +0.1
5,358,324 - AO356_23900 0.12 -1.1
5,358,522 + AO356_23900 0.34 -0.3
5,358,523 - AO356_23900 0.34 -0.2
5,358,523 - AO356_23900 0.34 -0.7
5,358,777 - AO356_23900 0.62 -0.4
5,358,777 - AO356_23900 0.62 +1.5
5,358,822 + AO356_23900 0.66 +0.2
5,358,870 + AO356_23900 0.72 +0.7
5,358,870 + AO356_23900 0.72 +0.6
5,358,870 + AO356_23900 0.72 +0.1
5,358,871 - AO356_23900 0.72 -0.1

Or see this region's nucleotide sequence