Experiment: Benzalkonium Chloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22320 and AO356_22325 are separated by 267 nucleotides AO356_22325 and AO356_22330 overlap by 17 nucleotides AO356_22330 and AO356_22335 are separated by 7 nucleotides AO356_22335 and AO356_22340 are separated by 100 nucleotides
AO356_22320: AO356_22320 - thioesterase, at 4,992,193 to 4,992,744
_22320
AO356_22325: AO356_22325 - reactive intermediate/imine deaminase, at 4,993,012 to 4,993,392
_22325
AO356_22330: AO356_22330 - hypothetical protein, at 4,993,376 to 4,993,612
_22330
AO356_22335: AO356_22335 - LysR family transcriptional regulator, at 4,993,620 to 4,994,573
_22335
AO356_22340: AO356_22340 - oxidoreductase, at 4,994,674 to 4,995,537
_22340
Position (kb) 4993
4994
4995 Strain fitness (log2 ratio) -1
0
1
2 at 4992.779 kb on + strand at 4992.779 kb on + strand at 4992.779 kb on + strand at 4992.802 kb on + strand at 4992.991 kb on - strand at 4993.121 kb on + strand, within AO356_22325 at 4993.121 kb on + strand, within AO356_22325 at 4993.163 kb on + strand, within AO356_22325 at 4993.163 kb on + strand, within AO356_22325 at 4993.163 kb on + strand, within AO356_22325 at 4993.164 kb on - strand, within AO356_22325 at 4993.164 kb on - strand, within AO356_22325 at 4993.164 kb on - strand, within AO356_22325 at 4993.164 kb on - strand, within AO356_22325 at 4993.368 kb on + strand at 4993.369 kb on - strand at 4993.369 kb on - strand at 4993.369 kb on - strand at 4993.369 kb on - strand at 4993.434 kb on + strand, within AO356_22330 at 4993.434 kb on + strand, within AO356_22330 at 4993.477 kb on - strand, within AO356_22330 at 4993.477 kb on - strand, within AO356_22330 at 4993.619 kb on - strand at 4993.676 kb on - strand at 4993.744 kb on + strand, within AO356_22335 at 4993.744 kb on + strand, within AO356_22335 at 4993.745 kb on - strand, within AO356_22335 at 4993.745 kb on - strand, within AO356_22335 at 4993.814 kb on - strand, within AO356_22335 at 4993.841 kb on - strand, within AO356_22335 at 4993.841 kb on - strand, within AO356_22335 at 4993.841 kb on - strand, within AO356_22335 at 4993.860 kb on + strand, within AO356_22335 at 4993.861 kb on - strand, within AO356_22335 at 4994.053 kb on + strand, within AO356_22335 at 4994.053 kb on + strand, within AO356_22335 at 4994.053 kb on + strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.054 kb on - strand, within AO356_22335 at 4994.218 kb on + strand, within AO356_22335 at 4994.461 kb on - strand, within AO356_22335 at 4994.636 kb on + strand at 4994.637 kb on - strand at 4994.638 kb on + strand at 4994.705 kb on + strand at 4994.909 kb on - strand, within AO356_22340 at 4994.909 kb on - strand, within AO356_22340 at 4995.235 kb on + strand, within AO356_22340 at 4995.235 kb on + strand, within AO356_22340 at 4995.236 kb on - strand, within AO356_22340 at 4995.236 kb on - strand, within AO356_22340 at 4995.236 kb on - strand, within AO356_22340 at 4995.236 kb on - strand, within AO356_22340 at 4995.298 kb on + strand, within AO356_22340 at 4995.298 kb on + strand, within AO356_22340 at 4995.535 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml remove 4,992,779 + -0.0 4,992,779 + +0.7 4,992,779 + -0.0 4,992,802 + +0.5 4,992,991 - -1.7 4,993,121 + AO356_22325 0.29 +0.3 4,993,121 + AO356_22325 0.29 -0.5 4,993,163 + AO356_22325 0.40 +0.8 4,993,163 + AO356_22325 0.40 -1.1 4,993,163 + AO356_22325 0.40 +0.6 4,993,164 - AO356_22325 0.40 -0.1 4,993,164 - AO356_22325 0.40 +0.7 4,993,164 - AO356_22325 0.40 +0.3 4,993,164 - AO356_22325 0.40 +0.8 4,993,368 + +0.6 4,993,369 - +0.1 4,993,369 - +0.2 4,993,369 - +0.5 4,993,369 - -0.3 4,993,434 + AO356_22330 0.24 +0.6 4,993,434 + AO356_22330 0.24 +0.3 4,993,477 - AO356_22330 0.43 +0.6 4,993,477 - AO356_22330 0.43 +0.3 4,993,619 - -0.7 4,993,676 - +0.7 4,993,744 + AO356_22335 0.13 +2.2 4,993,744 + AO356_22335 0.13 +0.9 4,993,745 - AO356_22335 0.13 -0.2 4,993,745 - AO356_22335 0.13 +1.8 4,993,814 - AO356_22335 0.20 +0.2 4,993,841 - AO356_22335 0.23 +0.2 4,993,841 - AO356_22335 0.23 +0.2 4,993,841 - AO356_22335 0.23 -0.5 4,993,860 + AO356_22335 0.25 -0.5 4,993,861 - AO356_22335 0.25 +0.0 4,994,053 + AO356_22335 0.45 -0.1 4,994,053 + AO356_22335 0.45 +0.4 4,994,053 + AO356_22335 0.45 -0.5 4,994,054 - AO356_22335 0.45 +0.7 4,994,054 - AO356_22335 0.45 +0.9 4,994,054 - AO356_22335 0.45 +0.1 4,994,054 - AO356_22335 0.45 +0.8 4,994,054 - AO356_22335 0.45 -0.6 4,994,218 + AO356_22335 0.63 +0.2 4,994,461 - AO356_22335 0.88 +1.3 4,994,636 + +1.1 4,994,637 - -0.6 4,994,638 + +0.1 4,994,705 + -0.9 4,994,909 - AO356_22340 0.27 -0.0 4,994,909 - AO356_22340 0.27 -0.1 4,995,235 + AO356_22340 0.65 -0.4 4,995,235 + AO356_22340 0.65 -1.6 4,995,236 - AO356_22340 0.65 +0.3 4,995,236 - AO356_22340 0.65 -0.6 4,995,236 - AO356_22340 0.65 +0.5 4,995,236 - AO356_22340 0.65 +0.6 4,995,298 + AO356_22340 0.72 -0.3 4,995,298 + AO356_22340 0.72 -0.5 4,995,535 + -0.2
Or see this region's nucleotide sequence