Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22215

Experiment: Benzalkonium Chloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22210 and AO356_22215 overlap by 4 nucleotidesAO356_22215 and AO356_22220 overlap by 4 nucleotidesAO356_22220 and AO356_22225 overlap by 1 nucleotidesAO356_22225 and AO356_22230 overlap by 1 nucleotides AO356_22210: AO356_22210 - hypothetical protein, at 4,972,246 to 4,973,247 _22210 AO356_22215: AO356_22215 - sulfur relay protein TusE, at 4,973,244 to 4,973,579 _22215 AO356_22220: AO356_22220 - sulfur relay protein DsrH, at 4,973,576 to 4,973,869 _22220 AO356_22225: AO356_22225 - sulfur relay protein TusC, at 4,973,869 to 4,974,231 _22225 AO356_22230: AO356_22230 - sulfurtransferase, at 4,974,231 to 4,974,623 _22230 Position (kb) 4973 4974Strain fitness (log2 ratio) -1 0 1at 4972.364 kb on + strand, within AO356_22210at 4972.365 kb on - strand, within AO356_22210at 4972.493 kb on + strand, within AO356_22210at 4972.842 kb on - strand, within AO356_22210at 4972.842 kb on - strand, within AO356_22210at 4972.926 kb on - strand, within AO356_22210

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml
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4,972,364 + AO356_22210 0.12 -1.0
4,972,365 - AO356_22210 0.12 -0.4
4,972,493 + AO356_22210 0.25 -0.9
4,972,842 - AO356_22210 0.59 -0.3
4,972,842 - AO356_22210 0.59 -0.8
4,972,926 - AO356_22210 0.68 +0.5

Or see this region's nucleotide sequence