Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19115

Experiment: Benzalkonium Chloride 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_19110 and AO356_19115 are separated by 212 nucleotidesAO356_19115 and AO356_19120 are separated by 165 nucleotidesAO356_19120 and AO356_19125 are separated by 66 nucleotides AO356_19110: AO356_19110 - DnaA regulatory inactivator Hda, at 4,292,965 to 4,293,669 _19110 AO356_19115: AO356_19115 - peptidase P60, at 4,293,882 to 4,294,508 _19115 AO356_19120: AO356_19120 - peptidase P60, at 4,294,674 to 4,295,210 _19120 AO356_19125: AO356_19125 - sorbosone dehydrogenase, at 4,295,277 to 4,296,587 _19125 Position (kb) 4293 4294 4295Strain fitness (log2 ratio) -3 -2 -1 0 1at 4292.903 kb on + strandat 4292.903 kb on + strandat 4292.905 kb on + strandat 4292.921 kb on + strandat 4292.921 kb on + strandat 4293.667 kb on + strandat 4293.667 kb on + strandat 4293.667 kb on + strandat 4293.668 kb on - strandat 4293.668 kb on - strandat 4293.763 kb on + strandat 4293.764 kb on - strandat 4293.764 kb on - strandat 4293.764 kb on - strandat 4293.771 kb on + strandat 4293.771 kb on + strandat 4293.772 kb on - strandat 4293.772 kb on - strandat 4293.777 kb on + strandat 4293.777 kb on + strandat 4293.778 kb on - strandat 4293.778 kb on - strandat 4293.778 kb on - strandat 4293.778 kb on - strandat 4293.784 kb on - strandat 4293.834 kb on - strandat 4293.834 kb on - strandat 4293.842 kb on + strandat 4293.842 kb on + strandat 4293.843 kb on - strandat 4293.857 kb on + strandat 4293.860 kb on + strandat 4293.886 kb on + strandat 4293.887 kb on - strandat 4293.887 kb on - strandat 4293.887 kb on - strandat 4294.106 kb on + strand, within AO356_19115at 4294.106 kb on + strand, within AO356_19115at 4294.106 kb on + strand, within AO356_19115at 4294.107 kb on - strand, within AO356_19115at 4294.158 kb on - strand, within AO356_19115at 4294.197 kb on + strand, within AO356_19115at 4294.197 kb on + strand, within AO356_19115at 4294.352 kb on + strand, within AO356_19115at 4294.356 kb on + strand, within AO356_19115at 4294.356 kb on + strand, within AO356_19115at 4294.356 kb on + strand, within AO356_19115at 4294.357 kb on - strand, within AO356_19115at 4294.357 kb on - strand, within AO356_19115at 4294.434 kb on + strand, within AO356_19115at 4294.435 kb on - strand, within AO356_19115at 4294.435 kb on - strand, within AO356_19115at 4294.435 kb on - strand, within AO356_19115at 4294.506 kb on + strandat 4294.532 kb on + strandat 4294.558 kb on + strandat 4294.559 kb on - strandat 4294.559 kb on - strandat 4294.673 kb on + strandat 4294.673 kb on + strandat 4294.673 kb on + strandat 4294.673 kb on + strandat 4294.673 kb on + strandat 4294.673 kb on + strandat 4294.673 kb on + strandat 4294.673 kb on + strandat 4294.673 kb on + strandat 4294.674 kb on - strandat 4294.674 kb on - strandat 4294.674 kb on - strandat 4294.674 kb on - strandat 4294.674 kb on - strandat 4294.911 kb on + strand, within AO356_19120at 4294.912 kb on - strand, within AO356_19120at 4294.912 kb on - strand, within AO356_19120at 4294.912 kb on - strand, within AO356_19120at 4294.918 kb on - strand, within AO356_19120at 4294.935 kb on - strand, within AO356_19120at 4294.935 kb on - strand, within AO356_19120at 4295.067 kb on + strand, within AO356_19120at 4295.067 kb on + strand, within AO356_19120at 4295.067 kb on + strand, within AO356_19120at 4295.067 kb on + strand, within AO356_19120at 4295.067 kb on + strand, within AO356_19120at 4295.067 kb on + strand, within AO356_19120at 4295.067 kb on + strand, within AO356_19120at 4295.067 kb on + strand, within AO356_19120at 4295.067 kb on + strand, within AO356_19120at 4295.068 kb on - strand, within AO356_19120at 4295.068 kb on - strand, within AO356_19120at 4295.158 kb on - strandat 4295.158 kb on - strandat 4295.158 kb on - strandat 4295.158 kb on - strandat 4295.201 kb on + strandat 4295.278 kb on + strandat 4295.279 kb on - strandat 4295.462 kb on + strand, within AO356_19125at 4295.462 kb on + strand, within AO356_19125at 4295.462 kb on + strand, within AO356_19125at 4295.462 kb on + strand, within AO356_19125at 4295.462 kb on + strand, within AO356_19125at 4295.462 kb on + strand, within AO356_19125at 4295.462 kb on + strand, within AO356_19125at 4295.462 kb on + strand, within AO356_19125at 4295.463 kb on - strand, within AO356_19125at 4295.463 kb on - strand, within AO356_19125at 4295.463 kb on - strand, within AO356_19125at 4295.464 kb on + strand, within AO356_19125at 4295.464 kb on + strand, within AO356_19125at 4295.465 kb on - strand, within AO356_19125at 4295.480 kb on + strand, within AO356_19125at 4295.480 kb on + strand, within AO356_19125at 4295.481 kb on - strand, within AO356_19125

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml
remove
4,292,903 + +0.2
4,292,903 + +0.1
4,292,905 + +0.6
4,292,921 + -1.0
4,292,921 + -0.2
4,293,667 + +0.3
4,293,667 + +0.8
4,293,667 + +0.3
4,293,668 - +0.2
4,293,668 - +0.2
4,293,763 + -0.0
4,293,764 - -1.1
4,293,764 - -1.4
4,293,764 - -2.2
4,293,771 + -0.1
4,293,771 + +0.8
4,293,772 - -1.3
4,293,772 - -1.0
4,293,777 + +0.9
4,293,777 + -0.3
4,293,778 - -1.1
4,293,778 - -2.5
4,293,778 - -1.5
4,293,778 - -0.5
4,293,784 - -0.8
4,293,834 - -0.6
4,293,834 - -1.3
4,293,842 + -1.1
4,293,842 + -1.1
4,293,843 - -1.2
4,293,857 + -1.3
4,293,860 + +0.7
4,293,886 + -3.4
4,293,887 - -1.9
4,293,887 - -3.1
4,293,887 - -1.4
4,294,106 + AO356_19115 0.36 -1.5
4,294,106 + AO356_19115 0.36 -2.4
4,294,106 + AO356_19115 0.36 -0.9
4,294,107 - AO356_19115 0.36 -1.0
4,294,158 - AO356_19115 0.44 -1.4
4,294,197 + AO356_19115 0.50 -1.8
4,294,197 + AO356_19115 0.50 -1.7
4,294,352 + AO356_19115 0.75 -1.8
4,294,356 + AO356_19115 0.76 -2.2
4,294,356 + AO356_19115 0.76 -2.5
4,294,356 + AO356_19115 0.76 -1.9
4,294,357 - AO356_19115 0.76 -0.7
4,294,357 - AO356_19115 0.76 -2.5
4,294,434 + AO356_19115 0.88 -1.6
4,294,435 - AO356_19115 0.88 -1.1
4,294,435 - AO356_19115 0.88 -3.4
4,294,435 - AO356_19115 0.88 -3.3
4,294,506 + +0.4
4,294,532 + -0.1
4,294,558 + -0.0
4,294,559 - +0.2
4,294,559 - -0.0
4,294,673 + -0.5
4,294,673 + -0.4
4,294,673 + +1.0
4,294,673 + +0.5
4,294,673 + +1.7
4,294,673 + +0.1
4,294,673 + -0.6
4,294,673 + +0.3
4,294,673 + +1.2
4,294,674 - +0.8
4,294,674 - -0.5
4,294,674 - -2.2
4,294,674 - +0.1
4,294,674 - -0.0
4,294,911 + AO356_19120 0.44 +1.0
4,294,912 - AO356_19120 0.44 +0.4
4,294,912 - AO356_19120 0.44 +0.6
4,294,912 - AO356_19120 0.44 +0.3
4,294,918 - AO356_19120 0.45 +0.4
4,294,935 - AO356_19120 0.49 +1.1
4,294,935 - AO356_19120 0.49 +0.0
4,295,067 + AO356_19120 0.73 +0.8
4,295,067 + AO356_19120 0.73 -0.8
4,295,067 + AO356_19120 0.73 +0.3
4,295,067 + AO356_19120 0.73 +0.5
4,295,067 + AO356_19120 0.73 +0.3
4,295,067 + AO356_19120 0.73 +1.5
4,295,067 + AO356_19120 0.73 +0.4
4,295,067 + AO356_19120 0.73 +0.7
4,295,067 + AO356_19120 0.73 +0.2
4,295,068 - AO356_19120 0.73 +0.7
4,295,068 - AO356_19120 0.73 +0.4
4,295,158 - +1.1
4,295,158 - +0.7
4,295,158 - +0.2
4,295,158 - +0.1
4,295,201 + -0.5
4,295,278 + -1.0
4,295,279 - +0.1
4,295,462 + AO356_19125 0.14 +0.3
4,295,462 + AO356_19125 0.14 +0.3
4,295,462 + AO356_19125 0.14 +0.1
4,295,462 + AO356_19125 0.14 +0.4
4,295,462 + AO356_19125 0.14 +0.3
4,295,462 + AO356_19125 0.14 -0.5
4,295,462 + AO356_19125 0.14 -0.1
4,295,462 + AO356_19125 0.14 +1.4
4,295,463 - AO356_19125 0.14 +0.3
4,295,463 - AO356_19125 0.14 -0.2
4,295,463 - AO356_19125 0.14 -1.6
4,295,464 + AO356_19125 0.14 -1.0
4,295,464 + AO356_19125 0.14 +0.1
4,295,465 - AO356_19125 0.14 +0.9
4,295,480 + AO356_19125 0.15 +0.1
4,295,480 + AO356_19125 0.15 -0.9
4,295,481 - AO356_19125 0.16 +0.3

Or see this region's nucleotide sequence