Experiment: Benzalkonium Chloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_15855 and AO356_15860 overlap by 47 nucleotides AO356_15860 and AO356_15865 are separated by 219 nucleotides AO356_15865 and AO356_15870 overlap by 4 nucleotides
AO356_15855: AO356_15855 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,591,157 to 3,592,104
_15855
AO356_15860: AO356_15860 - general secretion pathway protein GspH, at 3,592,058 to 3,592,597
_15860
AO356_15865: AO356_15865 - general secretion pathway protein GspH, at 3,592,817 to 3,593,290
_15865
AO356_15870: AO356_15870 - pilus assembly protein PilV, at 3,593,287 to 3,593,748
_15870
Position (kb)
3592
3593 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3591.061 kb on + strand at 3591.061 kb on + strand at 3592.102 kb on + strand at 3592.103 kb on - strand at 3592.395 kb on - strand, within AO356_15860 at 3592.512 kb on + strand, within AO356_15860 at 3592.593 kb on + strand at 3592.593 kb on + strand at 3592.593 kb on + strand at 3592.594 kb on - strand at 3592.594 kb on - strand at 3592.594 kb on - strand at 3592.773 kb on + strand at 3592.773 kb on + strand at 3592.773 kb on + strand at 3592.773 kb on + strand at 3592.774 kb on - strand at 3592.774 kb on - strand at 3592.774 kb on - strand at 3592.774 kb on - strand at 3592.774 kb on - strand at 3592.780 kb on + strand at 3592.780 kb on + strand at 3592.781 kb on - strand at 3592.781 kb on - strand at 3592.781 kb on - strand at 3592.790 kb on + strand at 3592.790 kb on + strand at 3592.791 kb on - strand at 3592.791 kb on - strand at 3592.792 kb on + strand at 3592.828 kb on + strand at 3592.828 kb on + strand at 3592.829 kb on - strand at 3592.873 kb on - strand, within AO356_15865 at 3592.889 kb on - strand, within AO356_15865 at 3592.889 kb on - strand, within AO356_15865 at 3593.063 kb on + strand, within AO356_15865 at 3593.063 kb on + strand, within AO356_15865 at 3593.063 kb on + strand, within AO356_15865 at 3593.063 kb on + strand, within AO356_15865 at 3593.063 kb on + strand, within AO356_15865 at 3593.063 kb on + strand, within AO356_15865 at 3593.063 kb on + strand, within AO356_15865 at 3593.063 kb on + strand, within AO356_15865 at 3593.063 kb on + strand, within AO356_15865 at 3593.063 kb on + strand, within AO356_15865 at 3593.064 kb on - strand, within AO356_15865 at 3593.064 kb on - strand, within AO356_15865 at 3593.064 kb on - strand, within AO356_15865 at 3593.064 kb on - strand, within AO356_15865 at 3593.064 kb on - strand, within AO356_15865 at 3593.064 kb on - strand, within AO356_15865 at 3593.064 kb on - strand, within AO356_15865 at 3593.064 kb on - strand, within AO356_15865 at 3593.064 kb on - strand, within AO356_15865 at 3593.064 kb on - strand, within AO356_15865 at 3593.064 kb on - strand, within AO356_15865 at 3593.064 kb on - strand, within AO356_15865 at 3593.064 kb on - strand, within AO356_15865 at 3593.072 kb on - strand, within AO356_15865 at 3593.072 kb on - strand, within AO356_15865 at 3593.091 kb on + strand, within AO356_15865 at 3593.092 kb on - strand, within AO356_15865 at 3593.092 kb on - strand, within AO356_15865 at 3593.213 kb on + strand, within AO356_15865 at 3593.213 kb on + strand, within AO356_15865 at 3593.213 kb on + strand, within AO356_15865 at 3593.213 kb on + strand, within AO356_15865 at 3593.213 kb on + strand, within AO356_15865 at 3593.214 kb on - strand, within AO356_15865 at 3593.214 kb on - strand, within AO356_15865 at 3593.214 kb on - strand, within AO356_15865 at 3593.217 kb on + strand, within AO356_15865 at 3593.217 kb on + strand, within AO356_15865 at 3593.217 kb on + strand, within AO356_15865 at 3593.217 kb on + strand, within AO356_15865 at 3593.217 kb on + strand, within AO356_15865 at 3593.217 kb on + strand, within AO356_15865 at 3593.217 kb on + strand, within AO356_15865 at 3593.218 kb on - strand, within AO356_15865 at 3593.218 kb on - strand, within AO356_15865 at 3593.218 kb on - strand, within AO356_15865 at 3593.254 kb on + strand at 3593.254 kb on + strand at 3593.255 kb on - strand at 3593.268 kb on + strand at 3593.268 kb on + strand at 3593.301 kb on + strand at 3593.301 kb on + strand at 3593.301 kb on + strand at 3593.302 kb on - strand at 3593.302 kb on - strand at 3593.407 kb on + strand, within AO356_15870 at 3593.407 kb on + strand, within AO356_15870 at 3593.408 kb on - strand, within AO356_15870 at 3593.408 kb on - strand, within AO356_15870 at 3593.408 kb on - strand, within AO356_15870 at 3593.408 kb on - strand, within AO356_15870 at 3593.452 kb on + strand, within AO356_15870 at 3593.452 kb on + strand, within AO356_15870 at 3593.452 kb on + strand, within AO356_15870 at 3593.495 kb on - strand, within AO356_15870 at 3593.495 kb on - strand, within AO356_15870 at 3593.552 kb on - strand, within AO356_15870
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml remove 3,591,061 + +0.4 3,591,061 + +0.5 3,592,102 + -0.0 3,592,103 - +0.6 3,592,395 - AO356_15860 0.62 -0.7 3,592,512 + AO356_15860 0.84 +0.4 3,592,593 + +0.8 3,592,593 + +0.1 3,592,593 + +0.9 3,592,594 - +0.3 3,592,594 - +0.6 3,592,594 - -2.1 3,592,773 + +0.7 3,592,773 + -1.1 3,592,773 + +0.2 3,592,773 + +0.0 3,592,774 - +0.9 3,592,774 - -0.5 3,592,774 - +0.5 3,592,774 - +0.3 3,592,774 - +1.7 3,592,780 + +0.3 3,592,780 + -0.3 3,592,781 - +0.2 3,592,781 - +0.9 3,592,781 - -0.2 3,592,790 + -1.8 3,592,790 + -2.0 3,592,791 - -0.6 3,592,791 - -0.3 3,592,792 + +0.5 3,592,828 + +0.5 3,592,828 + +0.4 3,592,829 - -0.5 3,592,873 - AO356_15865 0.12 +0.4 3,592,889 - AO356_15865 0.15 +0.5 3,592,889 - AO356_15865 0.15 -0.6 3,593,063 + AO356_15865 0.52 -0.7 3,593,063 + AO356_15865 0.52 +0.8 3,593,063 + AO356_15865 0.52 +1.8 3,593,063 + AO356_15865 0.52 +0.2 3,593,063 + AO356_15865 0.52 +0.5 3,593,063 + AO356_15865 0.52 +0.6 3,593,063 + AO356_15865 0.52 -2.7 3,593,063 + AO356_15865 0.52 +0.9 3,593,063 + AO356_15865 0.52 +0.6 3,593,063 + AO356_15865 0.52 +0.4 3,593,064 - AO356_15865 0.52 -0.8 3,593,064 - AO356_15865 0.52 +0.4 3,593,064 - AO356_15865 0.52 -0.6 3,593,064 - AO356_15865 0.52 +0.1 3,593,064 - AO356_15865 0.52 +0.1 3,593,064 - AO356_15865 0.52 +0.7 3,593,064 - AO356_15865 0.52 -0.2 3,593,064 - AO356_15865 0.52 +0.9 3,593,064 - AO356_15865 0.52 +0.8 3,593,064 - AO356_15865 0.52 +0.2 3,593,064 - AO356_15865 0.52 -2.0 3,593,064 - AO356_15865 0.52 -0.2 3,593,064 - AO356_15865 0.52 -0.9 3,593,072 - AO356_15865 0.54 -0.2 3,593,072 - AO356_15865 0.54 -1.3 3,593,091 + AO356_15865 0.58 -0.0 3,593,092 - AO356_15865 0.58 -0.0 3,593,092 - AO356_15865 0.58 +1.1 3,593,213 + AO356_15865 0.84 +0.1 3,593,213 + AO356_15865 0.84 +0.4 3,593,213 + AO356_15865 0.84 +0.2 3,593,213 + AO356_15865 0.84 +0.7 3,593,213 + AO356_15865 0.84 -0.0 3,593,214 - AO356_15865 0.84 +0.6 3,593,214 - AO356_15865 0.84 +0.2 3,593,214 - AO356_15865 0.84 -0.2 3,593,217 + AO356_15865 0.84 +0.4 3,593,217 + AO356_15865 0.84 -1.5 3,593,217 + AO356_15865 0.84 +0.5 3,593,217 + AO356_15865 0.84 +0.5 3,593,217 + AO356_15865 0.84 -0.7 3,593,217 + AO356_15865 0.84 +0.8 3,593,217 + AO356_15865 0.84 +2.2 3,593,218 - AO356_15865 0.85 -1.2 3,593,218 - AO356_15865 0.85 -0.5 3,593,218 - AO356_15865 0.85 +0.6 3,593,254 + -0.2 3,593,254 + -2.1 3,593,255 - -0.3 3,593,268 + -1.0 3,593,268 + +0.2 3,593,301 + +1.1 3,593,301 + -0.9 3,593,301 + +0.1 3,593,302 - -1.1 3,593,302 - +0.8 3,593,407 + AO356_15870 0.26 +0.4 3,593,407 + AO356_15870 0.26 -0.7 3,593,408 - AO356_15870 0.26 +1.3 3,593,408 - AO356_15870 0.26 -0.4 3,593,408 - AO356_15870 0.26 +0.8 3,593,408 - AO356_15870 0.26 +0.3 3,593,452 + AO356_15870 0.36 +0.6 3,593,452 + AO356_15870 0.36 +0.9 3,593,452 + AO356_15870 0.36 +0.7 3,593,495 - AO356_15870 0.45 +0.6 3,593,495 - AO356_15870 0.45 +0.1 3,593,552 - AO356_15870 0.57 +0.6
Or see this region's nucleotide sequence