Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14900

Experiment: Benzalkonium Chloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14890 and AO356_14895 are separated by 1 nucleotidesAO356_14895 and AO356_14900 are separated by 157 nucleotidesAO356_14900 and AO356_14905 are separated by 120 nucleotidesAO356_14905 and AO356_14910 are separated by 99 nucleotides AO356_14890: AO356_14890 - peptide ABC transporter permease, at 3,372,106 to 3,373,371 _14890 AO356_14895: AO356_14895 - methionine ABC transporter ATP-binding protein, at 3,373,373 to 3,374,083 _14895 AO356_14900: AO356_14900 - zinc-binding protein, at 3,374,241 to 3,374,828 _14900 AO356_14905: AO356_14905 - hypothetical protein, at 3,374,949 to 3,375,299 _14905 AO356_14910: AO356_14910 - thioredoxin, at 3,375,399 to 3,376,271 _14910 Position (kb) 3374 3375Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3373.354 kb on + strandat 3373.354 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.367 kb on + strandat 3373.368 kb on - strandat 3373.368 kb on - strandat 3373.368 kb on - strandat 3373.368 kb on - strandat 3373.368 kb on - strandat 3373.368 kb on - strandat 3373.368 kb on - strandat 3373.368 kb on - strandat 3373.533 kb on + strand, within AO356_14895at 3373.534 kb on - strand, within AO356_14895at 3373.534 kb on - strand, within AO356_14895at 3373.534 kb on - strand, within AO356_14895at 3373.821 kb on + strand, within AO356_14895at 3373.821 kb on + strand, within AO356_14895at 3373.821 kb on + strand, within AO356_14895at 3373.822 kb on - strand, within AO356_14895at 3373.937 kb on + strand, within AO356_14895at 3373.937 kb on + strand, within AO356_14895at 3373.938 kb on - strand, within AO356_14895at 3374.310 kb on + strand, within AO356_14900at 3374.310 kb on + strand, within AO356_14900at 3374.401 kb on + strand, within AO356_14900at 3374.401 kb on + strand, within AO356_14900at 3374.401 kb on + strand, within AO356_14900at 3374.577 kb on + strand, within AO356_14900at 3374.852 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.923 kb on + strandat 3374.924 kb on - strandat 3374.924 kb on - strandat 3374.924 kb on - strandat 3374.924 kb on - strandat 3374.924 kb on - strandat 3374.924 kb on - strandat 3374.924 kb on - strandat 3374.924 kb on - strandat 3374.924 kb on - strandat 3374.924 kb on - strandat 3374.924 kb on - strandat 3374.932 kb on + strandat 3374.932 kb on + strandat 3374.932 kb on + strandat 3374.933 kb on - strandat 3374.933 kb on - strandat 3374.933 kb on - strandat 3375.233 kb on + strand, within AO356_14905at 3375.244 kb on + strand, within AO356_14905at 3375.244 kb on + strand, within AO356_14905at 3375.245 kb on - strand, within AO356_14905at 3375.245 kb on - strandat 3375.245 kb on - strand, within AO356_14905at 3375.245 kb on - strand, within AO356_14905at 3375.245 kb on - strand, within AO356_14905at 3375.245 kb on - strand, within AO356_14905at 3375.276 kb on + strandat 3375.276 kb on + strandat 3375.276 kb on + strandat 3375.276 kb on + strandat 3375.276 kb on + strandat 3375.276 kb on + strandat 3375.276 kb on + strandat 3375.276 kb on + strandat 3375.277 kb on - strandat 3375.277 kb on - strandat 3375.277 kb on - strandat 3375.277 kb on - strandat 3375.277 kb on - strandat 3375.277 kb on - strandat 3375.277 kb on - strandat 3375.277 kb on - strandat 3375.278 kb on + strandat 3375.278 kb on + strandat 3375.278 kb on + strandat 3375.279 kb on - strandat 3375.279 kb on - strandat 3375.279 kb on - strandat 3375.279 kb on - strandat 3375.279 kb on - strandat 3375.279 kb on - strandat 3375.279 kb on - strandat 3375.279 kb on - strandat 3375.279 kb on - strandat 3375.279 kb on - strandat 3375.389 kb on + strandat 3375.389 kb on + strandat 3375.389 kb on + strandat 3375.389 kb on + strandat 3375.389 kb on + strandat 3375.389 kb on + strandat 3375.389 kb on + strandat 3375.403 kb on + strandat 3375.403 kb on + strandat 3375.403 kb on + strandat 3375.403 kb on + strandat 3375.403 kb on + strandat 3375.403 kb on + strandat 3375.404 kb on - strandat 3375.404 kb on - strandat 3375.404 kb on - strandat 3375.404 kb on - strandat 3375.404 kb on - strandat 3375.404 kb on - strandat 3375.430 kb on + strandat 3375.509 kb on - strand, within AO356_14910at 3375.509 kb on - strand, within AO356_14910at 3375.509 kb on - strand, within AO356_14910at 3375.559 kb on + strand, within AO356_14910at 3375.559 kb on + strand, within AO356_14910at 3375.559 kb on + strand, within AO356_14910at 3375.559 kb on + strand, within AO356_14910at 3375.560 kb on - strand, within AO356_14910at 3375.793 kb on + strand, within AO356_14910at 3375.793 kb on + strand, within AO356_14910

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml
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3,373,354 + +0.6
3,373,354 + +1.2
3,373,367 + -0.9
3,373,367 + +1.1
3,373,367 + +0.8
3,373,367 + +0.9
3,373,367 + +0.5
3,373,367 + +0.1
3,373,367 + +0.1
3,373,367 + +0.0
3,373,367 + -0.9
3,373,367 + +0.5
3,373,367 + +0.0
3,373,367 + +0.7
3,373,367 + +0.9
3,373,367 + -0.2
3,373,367 + +0.9
3,373,368 - -0.3
3,373,368 - +0.2
3,373,368 - -0.3
3,373,368 - +0.5
3,373,368 - +0.2
3,373,368 - -0.2
3,373,368 - +0.8
3,373,368 - -0.1
3,373,533 + AO356_14895 0.23 -1.1
3,373,534 - AO356_14895 0.23 -0.6
3,373,534 - AO356_14895 0.23 -0.7
3,373,534 - AO356_14895 0.23 +0.6
3,373,821 + AO356_14895 0.63 +0.8
3,373,821 + AO356_14895 0.63 -0.1
3,373,821 + AO356_14895 0.63 +1.3
3,373,822 - AO356_14895 0.63 -0.3
3,373,937 + AO356_14895 0.79 +0.2
3,373,937 + AO356_14895 0.79 +0.6
3,373,938 - AO356_14895 0.79 +0.3
3,374,310 + AO356_14900 0.12 +0.3
3,374,310 + AO356_14900 0.12 -0.5
3,374,401 + AO356_14900 0.27 -2.5
3,374,401 + AO356_14900 0.27 -0.5
3,374,401 + AO356_14900 0.27 -0.3
3,374,577 + AO356_14900 0.57 -1.0
3,374,852 + +0.8
3,374,923 + +0.3
3,374,923 + +0.3
3,374,923 + +0.2
3,374,923 + +0.3
3,374,923 + +0.8
3,374,923 + -0.6
3,374,923 + +0.2
3,374,923 + -0.4
3,374,923 + +0.1
3,374,923 + +0.9
3,374,923 + +0.5
3,374,923 + +0.7
3,374,923 + -0.5
3,374,923 + +0.6
3,374,923 + -0.7
3,374,923 + +1.0
3,374,923 + -0.5
3,374,923 + +0.0
3,374,923 + +0.5
3,374,923 + +0.0
3,374,923 + -0.5
3,374,924 - +0.7
3,374,924 - +0.8
3,374,924 - -0.1
3,374,924 - -1.0
3,374,924 - +0.6
3,374,924 - +2.9
3,374,924 - +0.1
3,374,924 - +0.2
3,374,924 - +1.4
3,374,924 - -0.3
3,374,924 - +0.1
3,374,932 + +0.8
3,374,932 + -0.5
3,374,932 + -0.4
3,374,933 - +0.8
3,374,933 - +0.3
3,374,933 - +0.5
3,375,233 + AO356_14905 0.81 -0.7
3,375,244 + AO356_14905 0.84 +0.9
3,375,244 + AO356_14905 0.84 +0.4
3,375,245 - AO356_14905 0.84 +0.1
3,375,245 - +0.8
3,375,245 - AO356_14905 0.84 -0.8
3,375,245 - AO356_14905 0.84 -1.4
3,375,245 - AO356_14905 0.84 +0.9
3,375,245 - AO356_14905 0.84 -1.6
3,375,276 + +1.1
3,375,276 + +0.0
3,375,276 + +0.3
3,375,276 + +0.4
3,375,276 + +0.0
3,375,276 + -0.3
3,375,276 + -0.2
3,375,276 + +0.8
3,375,277 - -0.3
3,375,277 - +0.2
3,375,277 - +0.3
3,375,277 - +1.8
3,375,277 - +0.0
3,375,277 - +0.0
3,375,277 - -0.3
3,375,277 - -0.5
3,375,278 + +0.2
3,375,278 + +0.0
3,375,278 + +0.4
3,375,279 - -0.2
3,375,279 - +1.3
3,375,279 - -1.1
3,375,279 - -0.8
3,375,279 - -0.7
3,375,279 - -0.5
3,375,279 - -0.6
3,375,279 - +0.3
3,375,279 - +0.3
3,375,279 - -0.7
3,375,389 + +0.3
3,375,389 + +1.0
3,375,389 + +0.4
3,375,389 + +0.5
3,375,389 + +0.5
3,375,389 + -0.6
3,375,389 + -0.4
3,375,403 + -0.4
3,375,403 + +0.7
3,375,403 + +0.2
3,375,403 + +0.1
3,375,403 + +0.7
3,375,403 + +0.2
3,375,404 - -1.2
3,375,404 - +0.8
3,375,404 - +0.2
3,375,404 - -0.6
3,375,404 - -0.9
3,375,404 - -0.1
3,375,430 + -0.0
3,375,509 - AO356_14910 0.13 +0.5
3,375,509 - AO356_14910 0.13 +0.7
3,375,509 - AO356_14910 0.13 -0.1
3,375,559 + AO356_14910 0.18 -1.2
3,375,559 + AO356_14910 0.18 +0.0
3,375,559 + AO356_14910 0.18 -0.9
3,375,559 + AO356_14910 0.18 +0.1
3,375,560 - AO356_14910 0.18 -0.6
3,375,793 + AO356_14910 0.45 +0.5
3,375,793 + AO356_14910 0.45 -0.3

Or see this region's nucleotide sequence