Experiment: Benzalkonium Chloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09340 and AO356_09345 overlap by 4 nucleotides AO356_09345 and AO356_09350 are separated by 8 nucleotides AO356_09350 and AO356_09355 overlap by 4 nucleotides
AO356_09340: AO356_09340 - type II secretion system protein GspE, at 2,110,008 to 2,111,471
_09340
AO356_09345: AO356_09345 - type II secretion system protein GspD, at 2,111,468 to 2,113,393
_09345
AO356_09350: AO356_09350 - hypothetical protein, at 2,113,402 to 2,113,929
_09350
AO356_09355: AO356_09355 - cytochrome B, at 2,113,926 to 2,114,468
_09355
Position (kb)
2111
2112
2113
2114 Strain fitness (log2 ratio)
-2
-1
0
1 at 2110.627 kb on + strand, within AO356_09340 at 2110.627 kb on + strand, within AO356_09340 at 2110.627 kb on + strand, within AO356_09340 at 2110.694 kb on - strand, within AO356_09340 at 2111.068 kb on + strand, within AO356_09340 at 2111.068 kb on + strand, within AO356_09340 at 2111.068 kb on + strand, within AO356_09340 at 2111.069 kb on - strand, within AO356_09340 at 2111.069 kb on - strand, within AO356_09340 at 2111.069 kb on - strand, within AO356_09340 at 2111.069 kb on - strand, within AO356_09340 at 2111.069 kb on - strand, within AO356_09340 at 2111.322 kb on + strand, within AO356_09340 at 2111.322 kb on + strand, within AO356_09340 at 2111.322 kb on + strand, within AO356_09340 at 2111.323 kb on - strand, within AO356_09340 at 2111.328 kb on + strand at 2111.328 kb on + strand at 2111.328 kb on + strand at 2111.328 kb on + strand at 2111.328 kb on + strand at 2111.329 kb on - strand at 2111.329 kb on - strand at 2111.329 kb on - strand at 2111.329 kb on - strand at 2111.329 kb on - strand at 2111.329 kb on - strand at 2111.610 kb on + strand at 2111.730 kb on + strand, within AO356_09345 at 2111.730 kb on + strand, within AO356_09345 at 2111.737 kb on + strand, within AO356_09345 at 2111.737 kb on + strand, within AO356_09345 at 2111.737 kb on + strand, within AO356_09345 at 2111.738 kb on - strand, within AO356_09345 at 2111.952 kb on + strand, within AO356_09345 at 2111.952 kb on + strand, within AO356_09345 at 2111.952 kb on + strand, within AO356_09345 at 2111.953 kb on - strand, within AO356_09345 at 2111.953 kb on - strand, within AO356_09345 at 2111.953 kb on - strand, within AO356_09345 at 2111.953 kb on - strand, within AO356_09345 at 2111.953 kb on - strand, within AO356_09345 at 2111.974 kb on + strand, within AO356_09345 at 2112.325 kb on + strand, within AO356_09345 at 2112.325 kb on + strand, within AO356_09345 at 2112.325 kb on + strand, within AO356_09345 at 2112.325 kb on + strand, within AO356_09345 at 2112.326 kb on - strand, within AO356_09345 at 2112.326 kb on - strand, within AO356_09345 at 2112.326 kb on - strand, within AO356_09345 at 2112.530 kb on - strand, within AO356_09345 at 2112.552 kb on - strand, within AO356_09345 at 2112.552 kb on - strand, within AO356_09345 at 2112.552 kb on - strand, within AO356_09345 at 2112.552 kb on - strand, within AO356_09345 at 2112.890 kb on + strand, within AO356_09345 at 2112.891 kb on - strand, within AO356_09345 at 2112.924 kb on + strand, within AO356_09345 at 2112.924 kb on + strand, within AO356_09345 at 2112.924 kb on + strand, within AO356_09345 at 2112.925 kb on - strand, within AO356_09345 at 2113.134 kb on + strand, within AO356_09345 at 2113.134 kb on + strand, within AO356_09345 at 2113.135 kb on - strand, within AO356_09345 at 2113.135 kb on - strand, within AO356_09345 at 2113.135 kb on - strand, within AO356_09345 at 2113.429 kb on + strand at 2113.433 kb on + strand at 2113.433 kb on + strand at 2113.433 kb on + strand at 2113.433 kb on + strand at 2113.433 kb on + strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.434 kb on - strand at 2113.611 kb on - strand, within AO356_09350 at 2113.862 kb on + strand, within AO356_09350 at 2113.862 kb on + strand, within AO356_09350 at 2113.862 kb on + strand, within AO356_09350 at 2113.988 kb on + strand, within AO356_09355 at 2113.989 kb on - strand, within AO356_09355 at 2113.989 kb on - strand, within AO356_09355 at 2114.197 kb on + strand, within AO356_09355 at 2114.198 kb on - strand, within AO356_09355 at 2114.198 kb on - strand, within AO356_09355 at 2114.198 kb on - strand, within AO356_09355
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml remove 2,110,627 + AO356_09340 0.42 +0.3 2,110,627 + AO356_09340 0.42 +0.5 2,110,627 + AO356_09340 0.42 -0.7 2,110,694 - AO356_09340 0.47 +0.1 2,111,068 + AO356_09340 0.72 -0.9 2,111,068 + AO356_09340 0.72 +0.0 2,111,068 + AO356_09340 0.72 -0.2 2,111,069 - AO356_09340 0.72 +0.3 2,111,069 - AO356_09340 0.72 -0.3 2,111,069 - AO356_09340 0.72 -0.2 2,111,069 - AO356_09340 0.72 -0.7 2,111,069 - AO356_09340 0.72 +0.3 2,111,322 + AO356_09340 0.90 +0.5 2,111,322 + AO356_09340 0.90 -0.1 2,111,322 + AO356_09340 0.90 +0.3 2,111,323 - AO356_09340 0.90 +0.6 2,111,328 + -0.5 2,111,328 + +0.8 2,111,328 + -2.7 2,111,328 + +1.3 2,111,328 + -0.2 2,111,329 - -0.6 2,111,329 - -0.5 2,111,329 - -0.4 2,111,329 - +0.5 2,111,329 - +0.9 2,111,329 - -0.6 2,111,610 + +0.1 2,111,730 + AO356_09345 0.14 -0.4 2,111,730 + AO356_09345 0.14 -0.8 2,111,737 + AO356_09345 0.14 +0.6 2,111,737 + AO356_09345 0.14 +0.2 2,111,737 + AO356_09345 0.14 -0.5 2,111,738 - AO356_09345 0.14 -2.0 2,111,952 + AO356_09345 0.25 -0.3 2,111,952 + AO356_09345 0.25 -1.3 2,111,952 + AO356_09345 0.25 +0.3 2,111,953 - AO356_09345 0.25 -0.1 2,111,953 - AO356_09345 0.25 +0.1 2,111,953 - AO356_09345 0.25 +0.3 2,111,953 - AO356_09345 0.25 -0.1 2,111,953 - AO356_09345 0.25 +0.3 2,111,974 + AO356_09345 0.26 +0.7 2,112,325 + AO356_09345 0.44 -1.3 2,112,325 + AO356_09345 0.44 -0.6 2,112,325 + AO356_09345 0.44 +0.1 2,112,325 + AO356_09345 0.44 +0.3 2,112,326 - AO356_09345 0.45 +1.3 2,112,326 - AO356_09345 0.45 +0.0 2,112,326 - AO356_09345 0.45 +0.9 2,112,530 - AO356_09345 0.55 +0.2 2,112,552 - AO356_09345 0.56 -0.2 2,112,552 - AO356_09345 0.56 +0.9 2,112,552 - AO356_09345 0.56 +0.2 2,112,552 - AO356_09345 0.56 +0.1 2,112,890 + AO356_09345 0.74 -0.6 2,112,891 - AO356_09345 0.74 +0.4 2,112,924 + AO356_09345 0.76 +0.0 2,112,924 + AO356_09345 0.76 -0.0 2,112,924 + AO356_09345 0.76 -1.4 2,112,925 - AO356_09345 0.76 +1.0 2,113,134 + AO356_09345 0.87 -0.1 2,113,134 + AO356_09345 0.87 -1.8 2,113,135 - AO356_09345 0.87 -0.0 2,113,135 - AO356_09345 0.87 +0.1 2,113,135 - AO356_09345 0.87 -0.0 2,113,429 + -2.7 2,113,433 + -0.3 2,113,433 + +0.3 2,113,433 + -0.0 2,113,433 + +0.4 2,113,433 + +0.5 2,113,434 - -0.6 2,113,434 - -0.5 2,113,434 - -1.7 2,113,434 - -0.2 2,113,434 - -1.1 2,113,434 - +0.2 2,113,434 - -0.3 2,113,611 - AO356_09350 0.40 +0.3 2,113,862 + AO356_09350 0.87 -2.6 2,113,862 + AO356_09350 0.87 -0.8 2,113,862 + AO356_09350 0.87 -0.0 2,113,988 + AO356_09355 0.11 +0.3 2,113,989 - AO356_09355 0.12 -0.4 2,113,989 - AO356_09355 0.12 -1.2 2,114,197 + AO356_09355 0.50 -1.0 2,114,198 - AO356_09355 0.50 -0.4 2,114,198 - AO356_09355 0.50 +0.7 2,114,198 - AO356_09355 0.50 +0.8
Or see this region's nucleotide sequence