Experiment: Benzalkonium Chloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_08975 and AO356_08980 are separated by 84 nucleotides AO356_08980 and AO356_08985 are separated by 3 nucleotides AO356_08985 and AO356_08990 are separated by 1 nucleotides AO356_08990 and AO356_08995 are separated by 81 nucleotides AO356_08995 and AO356_09000 overlap by 4 nucleotides
AO356_08975: AO356_08975 - diguanylate cyclase, at 2,028,749 to 2,031,442
_08975
AO356_08980: AO356_08980 - peptide methionine sulfoxide reductase, at 2,031,527 to 2,032,174
_08980
AO356_08985: AO356_08985 - hypothetical protein, at 2,032,178 to 2,032,378
_08985
AO356_08990: AO356_08990 - lactate dehydrogenase, at 2,032,380 to 2,033,219
_08990
AO356_08995: AO356_08995 - hypothetical protein, at 2,033,301 to 2,034,032
_08995
AO356_09000: AO356_09000 - type IV secretion protein Rhs, at 2,034,029 to 2,036,086
_09000
Position (kb)
2032
2033
2034 Strain fitness (log2 ratio)
-2
-1
0
1 at 2031.451 kb on + strand at 2031.452 kb on - strand at 2031.452 kb on - strand at 2031.454 kb on - strand at 2031.454 kb on - strand at 2031.454 kb on - strand at 2031.490 kb on + strand at 2031.491 kb on - strand at 2031.491 kb on - strand at 2031.525 kb on + strand at 2031.526 kb on - strand at 2031.556 kb on + strand at 2031.556 kb on + strand at 2031.557 kb on - strand at 2031.572 kb on - strand at 2031.762 kb on - strand, within AO356_08980 at 2031.791 kb on + strand, within AO356_08980 at 2031.791 kb on + strand, within AO356_08980 at 2031.791 kb on + strand, within AO356_08980 at 2031.792 kb on - strand, within AO356_08980 at 2031.792 kb on - strand, within AO356_08980 at 2031.845 kb on + strand, within AO356_08980 at 2031.846 kb on - strand, within AO356_08980 at 2031.866 kb on + strand, within AO356_08980 at 2031.866 kb on + strand, within AO356_08980 at 2031.867 kb on - strand, within AO356_08980 at 2031.867 kb on - strand, within AO356_08980 at 2031.962 kb on + strand, within AO356_08980 at 2031.962 kb on + strand, within AO356_08980 at 2031.962 kb on + strand, within AO356_08980 at 2031.962 kb on + strand, within AO356_08980 at 2031.962 kb on + strand, within AO356_08980 at 2031.962 kb on + strand, within AO356_08980 at 2031.963 kb on - strand, within AO356_08980 at 2031.963 kb on - strand, within AO356_08980 at 2031.963 kb on - strand, within AO356_08980 at 2031.963 kb on - strand, within AO356_08980 at 2031.963 kb on - strand, within AO356_08980 at 2031.963 kb on - strand, within AO356_08980 at 2032.082 kb on + strand, within AO356_08980 at 2032.097 kb on + strand, within AO356_08980 at 2032.097 kb on + strand, within AO356_08980 at 2032.097 kb on + strand, within AO356_08980 at 2032.097 kb on + strand, within AO356_08980 at 2032.098 kb on - strand, within AO356_08980 at 2032.098 kb on - strand, within AO356_08980 at 2032.109 kb on + strand, within AO356_08980 at 2032.110 kb on - strand at 2032.110 kb on - strand at 2032.110 kb on - strand at 2032.110 kb on - strand at 2032.179 kb on + strand at 2032.179 kb on + strand at 2032.179 kb on + strand at 2032.179 kb on + strand at 2032.179 kb on + strand at 2032.179 kb on + strand at 2032.180 kb on - strand at 2032.257 kb on + strand, within AO356_08985 at 2032.600 kb on + strand, within AO356_08990 at 2032.936 kb on + strand, within AO356_08990 at 2032.937 kb on - strand, within AO356_08990 at 2032.937 kb on - strand, within AO356_08990 at 2032.981 kb on + strand, within AO356_08990 at 2032.982 kb on - strand, within AO356_08990 at 2033.041 kb on + strand, within AO356_08990 at 2033.041 kb on + strand, within AO356_08990 at 2033.041 kb on + strand, within AO356_08990 at 2033.041 kb on + strand, within AO356_08990 at 2033.042 kb on - strand, within AO356_08990 at 2033.080 kb on + strand, within AO356_08990 at 2033.080 kb on + strand, within AO356_08990 at 2033.080 kb on + strand, within AO356_08990 at 2033.081 kb on - strand, within AO356_08990 at 2033.081 kb on - strand, within AO356_08990 at 2033.110 kb on + strand, within AO356_08990 at 2033.213 kb on - strand at 2033.247 kb on + strand at 2033.248 kb on - strand at 2033.248 kb on - strand at 2033.323 kb on + strand at 2033.323 kb on + strand at 2033.324 kb on - strand at 2033.324 kb on - strand at 2033.324 kb on - strand at 2033.324 kb on - strand at 2033.324 kb on - strand at 2033.419 kb on + strand, within AO356_08995 at 2033.562 kb on + strand, within AO356_08995 at 2033.563 kb on - strand, within AO356_08995 at 2033.838 kb on + strand, within AO356_08995 at 2033.838 kb on + strand, within AO356_08995 at 2033.838 kb on + strand, within AO356_08995 at 2033.838 kb on + strand, within AO356_08995 at 2033.838 kb on + strand, within AO356_08995 at 2033.838 kb on + strand, within AO356_08995 at 2033.839 kb on - strand, within AO356_08995 at 2033.839 kb on - strand, within AO356_08995 at 2033.842 kb on + strand, within AO356_08995 at 2033.842 kb on + strand, within AO356_08995 at 2033.842 kb on + strand, within AO356_08995 at 2033.842 kb on + strand, within AO356_08995 at 2033.842 kb on + strand, within AO356_08995 at 2033.842 kb on + strand, within AO356_08995 at 2033.842 kb on + strand, within AO356_08995 at 2033.843 kb on - strand, within AO356_08995 at 2033.843 kb on - strand, within AO356_08995
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml remove 2,031,451 + +0.9 2,031,452 - -0.5 2,031,452 - +0.5 2,031,454 - +0.8 2,031,454 - -0.6 2,031,454 - +0.6 2,031,490 + +0.4 2,031,491 - -0.0 2,031,491 - +0.5 2,031,525 + -0.8 2,031,526 - +1.6 2,031,556 + -1.1 2,031,556 + +0.4 2,031,557 - -2.1 2,031,572 - +0.1 2,031,762 - AO356_08980 0.36 +1.0 2,031,791 + AO356_08980 0.41 +0.5 2,031,791 + AO356_08980 0.41 -0.5 2,031,791 + AO356_08980 0.41 +0.4 2,031,792 - AO356_08980 0.41 -0.1 2,031,792 - AO356_08980 0.41 -0.0 2,031,845 + AO356_08980 0.49 -0.5 2,031,846 - AO356_08980 0.49 +0.8 2,031,866 + AO356_08980 0.52 +1.1 2,031,866 + AO356_08980 0.52 +0.2 2,031,867 - AO356_08980 0.52 -0.6 2,031,867 - AO356_08980 0.52 -0.6 2,031,962 + AO356_08980 0.67 -0.4 2,031,962 + AO356_08980 0.67 +1.2 2,031,962 + AO356_08980 0.67 +0.1 2,031,962 + AO356_08980 0.67 -0.0 2,031,962 + AO356_08980 0.67 -0.5 2,031,962 + AO356_08980 0.67 -1.0 2,031,963 - AO356_08980 0.67 -0.3 2,031,963 - AO356_08980 0.67 +0.0 2,031,963 - AO356_08980 0.67 -0.3 2,031,963 - AO356_08980 0.67 -0.4 2,031,963 - AO356_08980 0.67 +0.2 2,031,963 - AO356_08980 0.67 +0.4 2,032,082 + AO356_08980 0.86 +0.6 2,032,097 + AO356_08980 0.88 +0.6 2,032,097 + AO356_08980 0.88 +0.3 2,032,097 + AO356_08980 0.88 +0.3 2,032,097 + AO356_08980 0.88 +0.4 2,032,098 - AO356_08980 0.88 -0.5 2,032,098 - AO356_08980 0.88 -0.9 2,032,109 + AO356_08980 0.90 +0.2 2,032,110 - +0.2 2,032,110 - +0.1 2,032,110 - -1.3 2,032,110 - -1.2 2,032,179 + -0.3 2,032,179 + +1.1 2,032,179 + +0.4 2,032,179 + +0.5 2,032,179 + -0.8 2,032,179 + -0.1 2,032,180 - -0.7 2,032,257 + AO356_08985 0.39 -0.1 2,032,600 + AO356_08990 0.26 -0.2 2,032,936 + AO356_08990 0.66 -0.1 2,032,937 - AO356_08990 0.66 -0.3 2,032,937 - AO356_08990 0.66 -0.3 2,032,981 + AO356_08990 0.72 +1.7 2,032,982 - AO356_08990 0.72 -0.2 2,033,041 + AO356_08990 0.79 -0.6 2,033,041 + AO356_08990 0.79 -0.1 2,033,041 + AO356_08990 0.79 -0.0 2,033,041 + AO356_08990 0.79 -0.5 2,033,042 - AO356_08990 0.79 +0.2 2,033,080 + AO356_08990 0.83 -0.2 2,033,080 + AO356_08990 0.83 +0.4 2,033,080 + AO356_08990 0.83 +0.7 2,033,081 - AO356_08990 0.83 -0.8 2,033,081 - AO356_08990 0.83 -1.2 2,033,110 + AO356_08990 0.87 +0.3 2,033,213 - -0.4 2,033,247 + -1.8 2,033,248 - +0.3 2,033,248 - +1.6 2,033,323 + -0.9 2,033,323 + +0.1 2,033,324 - +0.4 2,033,324 - +0.0 2,033,324 - +1.2 2,033,324 - -0.1 2,033,324 - -1.1 2,033,419 + AO356_08995 0.16 -1.0 2,033,562 + AO356_08995 0.36 -0.8 2,033,563 - AO356_08995 0.36 +0.5 2,033,838 + AO356_08995 0.73 +1.2 2,033,838 + AO356_08995 0.73 +1.0 2,033,838 + AO356_08995 0.73 +0.4 2,033,838 + AO356_08995 0.73 -0.0 2,033,838 + AO356_08995 0.73 +1.1 2,033,838 + AO356_08995 0.73 -0.1 2,033,839 - AO356_08995 0.73 +0.0 2,033,839 - AO356_08995 0.73 +0.2 2,033,842 + AO356_08995 0.74 +0.6 2,033,842 + AO356_08995 0.74 +0.6 2,033,842 + AO356_08995 0.74 +0.8 2,033,842 + AO356_08995 0.74 -0.9 2,033,842 + AO356_08995 0.74 -0.4 2,033,842 + AO356_08995 0.74 +0.5 2,033,842 + AO356_08995 0.74 -0.1 2,033,843 - AO356_08995 0.74 +0.2 2,033,843 - AO356_08995 0.74 -0.1
Or see this region's nucleotide sequence