Experiment: Benzalkonium Chloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07960 and AO356_07965 are separated by 221 nucleotides AO356_07965 and AO356_07970 are separated by 7 nucleotides AO356_07970 and AO356_07975 are separated by 534 nucleotides
AO356_07960: AO356_07960 - LysR family transcriptional regulator, at 1,784,115 to 1,785,035
_07960
AO356_07965: AO356_07965 - TetR family transcriptional regulator, at 1,785,257 to 1,785,907
_07965
AO356_07970: AO356_07970 - thymidylate synthase, at 1,785,915 to 1,786,496
_07970
AO356_07975: AO356_07975 - ABC transporter, at 1,787,031 to 1,788,584
_07975
Position (kb)
1785
1786
1787 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1784.943 kb on + strand, within AO356_07960 at 1784.943 kb on + strand, within AO356_07960 at 1784.944 kb on - strand at 1784.944 kb on - strand at 1784.944 kb on - strand at 1785.079 kb on + strand at 1785.079 kb on + strand at 1785.079 kb on + strand at 1785.079 kb on + strand at 1785.079 kb on + strand at 1785.079 kb on + strand at 1785.080 kb on - strand at 1785.080 kb on - strand at 1785.080 kb on - strand at 1785.107 kb on + strand at 1785.177 kb on + strand at 1785.177 kb on + strand at 1785.178 kb on - strand at 1785.178 kb on - strand at 1785.178 kb on - strand at 1785.373 kb on + strand, within AO356_07965 at 1785.373 kb on + strand, within AO356_07965 at 1785.374 kb on - strand, within AO356_07965 at 1785.374 kb on - strand, within AO356_07965 at 1785.428 kb on + strand, within AO356_07965 at 1785.428 kb on + strand, within AO356_07965 at 1785.429 kb on - strand, within AO356_07965 at 1785.429 kb on - strand, within AO356_07965 at 1785.429 kb on - strand, within AO356_07965 at 1785.431 kb on + strand, within AO356_07965 at 1785.431 kb on + strand, within AO356_07965 at 1785.431 kb on + strand, within AO356_07965 at 1785.431 kb on + strand, within AO356_07965 at 1785.432 kb on - strand, within AO356_07965 at 1785.432 kb on - strand, within AO356_07965 at 1785.432 kb on - strand, within AO356_07965 at 1785.432 kb on - strand, within AO356_07965 at 1785.432 kb on - strand, within AO356_07965 at 1785.432 kb on - strand, within AO356_07965 at 1785.432 kb on - strand, within AO356_07965 at 1785.432 kb on - strand, within AO356_07965 at 1785.432 kb on - strand, within AO356_07965 at 1785.432 kb on - strand, within AO356_07965 at 1785.442 kb on + strand, within AO356_07965 at 1785.455 kb on + strand, within AO356_07965 at 1785.455 kb on + strand, within AO356_07965 at 1785.455 kb on + strand, within AO356_07965 at 1785.456 kb on - strand, within AO356_07965 at 1785.456 kb on - strand, within AO356_07965 at 1785.494 kb on - strand, within AO356_07965 at 1785.505 kb on + strand, within AO356_07965 at 1785.506 kb on - strand, within AO356_07965 at 1785.506 kb on - strand, within AO356_07965 at 1785.506 kb on - strand, within AO356_07965 at 1785.548 kb on + strand, within AO356_07965 at 1785.549 kb on - strand, within AO356_07965 at 1785.550 kb on + strand, within AO356_07965 at 1785.550 kb on + strand, within AO356_07965 at 1785.644 kb on + strand, within AO356_07965 at 1785.644 kb on + strand, within AO356_07965 at 1785.659 kb on + strand, within AO356_07965 at 1785.745 kb on + strand, within AO356_07965 at 1785.745 kb on + strand, within AO356_07965 at 1785.745 kb on + strand, within AO356_07965 at 1785.745 kb on + strand, within AO356_07965 at 1785.746 kb on - strand, within AO356_07965 at 1785.746 kb on - strand, within AO356_07965 at 1785.746 kb on - strand, within AO356_07965 at 1785.776 kb on + strand, within AO356_07965 at 1785.777 kb on - strand, within AO356_07965 at 1785.906 kb on - strand at 1785.923 kb on + strand at 1786.086 kb on + strand, within AO356_07970 at 1786.237 kb on - strand, within AO356_07970 at 1786.310 kb on + strand, within AO356_07970 at 1786.310 kb on + strand, within AO356_07970 at 1786.311 kb on - strand, within AO356_07970 at 1786.311 kb on - strand, within AO356_07970 at 1786.311 kb on - strand, within AO356_07970 at 1786.402 kb on + strand, within AO356_07970 at 1786.403 kb on - strand, within AO356_07970 at 1786.595 kb on + strand at 1786.595 kb on + strand at 1786.704 kb on + strand at 1786.704 kb on + strand at 1786.705 kb on - strand at 1786.726 kb on + strand at 1786.726 kb on + strand at 1786.726 kb on + strand at 1786.727 kb on - strand at 1786.727 kb on - strand at 1786.754 kb on + strand at 1786.754 kb on + strand at 1786.754 kb on + strand at 1786.754 kb on + strand at 1786.754 kb on + strand at 1786.873 kb on + strand at 1786.873 kb on + strand at 1786.873 kb on + strand at 1786.873 kb on + strand at 1786.874 kb on - strand at 1786.874 kb on - strand at 1786.929 kb on + strand at 1786.974 kb on + strand at 1787.192 kb on + strand, within AO356_07975 at 1787.192 kb on + strand, within AO356_07975 at 1787.192 kb on + strand, within AO356_07975 at 1787.192 kb on + strand, within AO356_07975 at 1787.192 kb on + strand, within AO356_07975 at 1787.192 kb on + strand, within AO356_07975 at 1787.192 kb on + strand, within AO356_07975 at 1787.193 kb on - strand, within AO356_07975 at 1787.193 kb on - strand, within AO356_07975 at 1787.193 kb on - strand, within AO356_07975 at 1787.193 kb on - strand, within AO356_07975 at 1787.193 kb on - strand, within AO356_07975 at 1787.193 kb on - strand, within AO356_07975 at 1787.193 kb on - strand, within AO356_07975 at 1787.196 kb on + strand, within AO356_07975 at 1787.196 kb on + strand, within AO356_07975 at 1787.197 kb on - strand, within AO356_07975 at 1787.418 kb on + strand, within AO356_07975
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml remove 1,784,943 + AO356_07960 0.90 +0.1 1,784,943 + AO356_07960 0.90 +1.0 1,784,944 - +0.1 1,784,944 - +1.3 1,784,944 - +0.5 1,785,079 + -0.8 1,785,079 + -0.1 1,785,079 + +0.4 1,785,079 + +0.7 1,785,079 + -0.2 1,785,079 + +1.0 1,785,080 - +0.5 1,785,080 - -0.6 1,785,080 - -0.4 1,785,107 + -0.1 1,785,177 + +0.7 1,785,177 + +0.9 1,785,178 - +0.3 1,785,178 - +0.2 1,785,178 - -1.0 1,785,373 + AO356_07965 0.18 +0.0 1,785,373 + AO356_07965 0.18 -1.9 1,785,374 - AO356_07965 0.18 +0.1 1,785,374 - AO356_07965 0.18 +0.4 1,785,428 + AO356_07965 0.26 -1.1 1,785,428 + AO356_07965 0.26 -1.0 1,785,429 - AO356_07965 0.26 +0.4 1,785,429 - AO356_07965 0.26 -0.1 1,785,429 - AO356_07965 0.26 +1.0 1,785,431 + AO356_07965 0.27 +0.4 1,785,431 + AO356_07965 0.27 +0.3 1,785,431 + AO356_07965 0.27 -0.0 1,785,431 + AO356_07965 0.27 +1.0 1,785,432 - AO356_07965 0.27 +0.2 1,785,432 - AO356_07965 0.27 +0.7 1,785,432 - AO356_07965 0.27 +0.6 1,785,432 - AO356_07965 0.27 +1.2 1,785,432 - AO356_07965 0.27 -0.4 1,785,432 - AO356_07965 0.27 -0.0 1,785,432 - AO356_07965 0.27 -0.2 1,785,432 - AO356_07965 0.27 -0.1 1,785,432 - AO356_07965 0.27 +1.4 1,785,432 - AO356_07965 0.27 -1.1 1,785,442 + AO356_07965 0.28 -0.3 1,785,455 + AO356_07965 0.30 +0.6 1,785,455 + AO356_07965 0.30 +0.2 1,785,455 + AO356_07965 0.30 -1.6 1,785,456 - AO356_07965 0.31 -1.0 1,785,456 - AO356_07965 0.31 +0.1 1,785,494 - AO356_07965 0.36 -1.1 1,785,505 + AO356_07965 0.38 -0.6 1,785,506 - AO356_07965 0.38 -0.0 1,785,506 - AO356_07965 0.38 -0.5 1,785,506 - AO356_07965 0.38 +1.1 1,785,548 + AO356_07965 0.45 +0.7 1,785,549 - AO356_07965 0.45 +0.1 1,785,550 + AO356_07965 0.45 -0.0 1,785,550 + AO356_07965 0.45 -0.2 1,785,644 + AO356_07965 0.59 -0.2 1,785,644 + AO356_07965 0.59 -0.1 1,785,659 + AO356_07965 0.62 +0.2 1,785,745 + AO356_07965 0.75 +0.4 1,785,745 + AO356_07965 0.75 -0.5 1,785,745 + AO356_07965 0.75 -0.2 1,785,745 + AO356_07965 0.75 +0.5 1,785,746 - AO356_07965 0.75 -0.6 1,785,746 - AO356_07965 0.75 +1.3 1,785,746 - AO356_07965 0.75 +0.6 1,785,776 + AO356_07965 0.80 +0.5 1,785,777 - AO356_07965 0.80 +0.3 1,785,906 - -0.3 1,785,923 + -0.0 1,786,086 + AO356_07970 0.29 -0.0 1,786,237 - AO356_07970 0.55 +0.1 1,786,310 + AO356_07970 0.68 +1.0 1,786,310 + AO356_07970 0.68 +1.4 1,786,311 - AO356_07970 0.68 -0.9 1,786,311 - AO356_07970 0.68 +1.6 1,786,311 - AO356_07970 0.68 +1.5 1,786,402 + AO356_07970 0.84 +3.3 1,786,403 - AO356_07970 0.84 +0.6 1,786,595 + -0.3 1,786,595 + +0.9 1,786,704 + -1.0 1,786,704 + +0.1 1,786,705 - +0.7 1,786,726 + -0.2 1,786,726 + +0.7 1,786,726 + +0.0 1,786,727 - -0.4 1,786,727 - +1.6 1,786,754 + -0.3 1,786,754 + +0.2 1,786,754 + +0.3 1,786,754 + +0.3 1,786,754 + -0.0 1,786,873 + +0.7 1,786,873 + +0.1 1,786,873 + +0.8 1,786,873 + +0.3 1,786,874 - +0.2 1,786,874 - +0.0 1,786,929 + +0.1 1,786,974 + +0.1 1,787,192 + AO356_07975 0.10 +0.3 1,787,192 + AO356_07975 0.10 -0.6 1,787,192 + AO356_07975 0.10 -0.1 1,787,192 + AO356_07975 0.10 +0.5 1,787,192 + AO356_07975 0.10 +0.3 1,787,192 + AO356_07975 0.10 -0.0 1,787,192 + AO356_07975 0.10 +0.4 1,787,193 - AO356_07975 0.10 -0.7 1,787,193 - AO356_07975 0.10 -1.0 1,787,193 - AO356_07975 0.10 +0.1 1,787,193 - AO356_07975 0.10 -0.4 1,787,193 - AO356_07975 0.10 -0.1 1,787,193 - AO356_07975 0.10 +0.7 1,787,193 - AO356_07975 0.10 +0.1 1,787,196 + AO356_07975 0.11 -0.1 1,787,196 + AO356_07975 0.11 +1.0 1,787,197 - AO356_07975 0.11 +0.3 1,787,418 + AO356_07975 0.25 +0.1
Or see this region's nucleotide sequence