Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05485

Experiment: Benzalkonium Chloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05480 and AO356_05485 are separated by 234 nucleotidesAO356_05485 and AO356_05490 overlap by 4 nucleotides AO356_05480: AO356_05480 - acyl-homoserine lactone acylase subunit beta, at 1,226,423 to 1,228,873 _05480 AO356_05485: AO356_05485 - DNA ligase-associated DEXH box helicase, at 1,229,108 to 1,230,139 _05485 AO356_05490: AO356_05490 - ATP-dependent DNA ligase, at 1,230,136 to 1,231,824 _05490 Position (kb) 1229 1230 1231Strain fitness (log2 ratio) -2 -1 0 1at 1228.196 kb on + strand, within AO356_05480at 1228.196 kb on + strand, within AO356_05480at 1228.197 kb on - strand, within AO356_05480at 1228.197 kb on - strand, within AO356_05480at 1228.256 kb on + strand, within AO356_05480at 1228.256 kb on + strand, within AO356_05480at 1228.257 kb on - strand, within AO356_05480at 1228.257 kb on - strand, within AO356_05480at 1228.257 kb on - strand, within AO356_05480at 1228.257 kb on - strand, within AO356_05480at 1228.257 kb on - strand, within AO356_05480at 1228.257 kb on - strand, within AO356_05480at 1228.361 kb on + strand, within AO356_05480at 1228.544 kb on + strand, within AO356_05480at 1228.544 kb on + strand, within AO356_05480at 1228.545 kb on - strand, within AO356_05480at 1228.575 kb on + strand, within AO356_05480at 1228.575 kb on + strand, within AO356_05480at 1228.575 kb on + strand, within AO356_05480at 1228.576 kb on - strand, within AO356_05480at 1228.576 kb on - strand, within AO356_05480at 1228.678 kb on + strandat 1228.678 kb on + strandat 1228.757 kb on + strandat 1228.758 kb on - strandat 1228.758 kb on - strandat 1228.758 kb on - strandat 1228.758 kb on - strandat 1228.793 kb on + strandat 1228.794 kb on - strandat 1228.871 kb on + strandat 1228.871 kb on + strandat 1228.871 kb on + strandat 1228.872 kb on - strandat 1228.872 kb on - strandat 1228.894 kb on + strandat 1228.894 kb on + strandat 1228.895 kb on - strandat 1228.895 kb on - strandat 1228.895 kb on - strandat 1228.895 kb on - strandat 1228.898 kb on - strandat 1228.898 kb on - strandat 1228.898 kb on - strandat 1228.898 kb on - strandat 1228.898 kb on - strandat 1228.898 kb on - strandat 1228.898 kb on - strandat 1228.898 kb on - strandat 1228.898 kb on - strandat 1228.898 kb on - strandat 1228.953 kb on + strandat 1228.953 kb on + strandat 1229.041 kb on + strandat 1229.042 kb on - strandat 1229.077 kb on + strandat 1229.078 kb on - strandat 1229.078 kb on - strandat 1229.142 kb on - strandat 1229.142 kb on - strandat 1229.142 kb on - strandat 1229.162 kb on + strandat 1229.162 kb on + strandat 1229.163 kb on - strandat 1229.163 kb on - strandat 1229.243 kb on + strand, within AO356_05485at 1229.243 kb on + strand, within AO356_05485at 1229.243 kb on + strand, within AO356_05485at 1229.243 kb on + strand, within AO356_05485at 1229.244 kb on - strand, within AO356_05485at 1229.244 kb on - strand, within AO356_05485at 1229.244 kb on - strand, within AO356_05485at 1229.244 kb on - strand, within AO356_05485at 1229.346 kb on + strand, within AO356_05485at 1229.346 kb on + strand, within AO356_05485at 1229.346 kb on + strand, within AO356_05485at 1229.395 kb on - strand, within AO356_05485at 1229.395 kb on - strand, within AO356_05485at 1229.438 kb on + strand, within AO356_05485at 1229.438 kb on + strand, within AO356_05485at 1229.439 kb on - strand, within AO356_05485at 1229.439 kb on - strand, within AO356_05485at 1229.491 kb on + strand, within AO356_05485at 1229.491 kb on + strand, within AO356_05485at 1229.492 kb on - strand, within AO356_05485at 1229.492 kb on - strand, within AO356_05485at 1229.528 kb on + strand, within AO356_05485at 1229.528 kb on + strand, within AO356_05485at 1229.621 kb on + strand, within AO356_05485at 1229.622 kb on - strand, within AO356_05485at 1229.622 kb on - strand, within AO356_05485at 1229.622 kb on - strand, within AO356_05485at 1229.718 kb on - strand, within AO356_05485at 1229.753 kb on + strand, within AO356_05485at 1229.753 kb on + strand, within AO356_05485at 1229.753 kb on + strand, within AO356_05485at 1229.753 kb on + strand, within AO356_05485at 1229.753 kb on + strand, within AO356_05485at 1229.754 kb on - strand, within AO356_05485at 1229.754 kb on - strand, within AO356_05485at 1229.754 kb on - strand, within AO356_05485at 1229.754 kb on - strand, within AO356_05485at 1229.754 kb on - strand, within AO356_05485at 1229.754 kb on - strand, within AO356_05485at 1229.855 kb on + strand, within AO356_05485at 1230.157 kb on + strandat 1230.158 kb on - strandat 1230.158 kb on - strandat 1230.158 kb on - strandat 1230.214 kb on + strandat 1230.214 kb on + strandat 1230.214 kb on + strandat 1230.214 kb on + strandat 1230.214 kb on + strandat 1230.214 kb on + strandat 1230.215 kb on - strandat 1230.215 kb on - strandat 1230.215 kb on - strandat 1230.256 kb on + strandat 1230.256 kb on + strandat 1230.257 kb on - strandat 1230.361 kb on + strand, within AO356_05490at 1230.362 kb on - strand, within AO356_05490at 1230.401 kb on + strand, within AO356_05490at 1230.401 kb on + strand, within AO356_05490at 1230.402 kb on - strand, within AO356_05490at 1230.402 kb on - strand, within AO356_05490at 1230.405 kb on - strand, within AO356_05490at 1230.668 kb on - strand, within AO356_05490at 1230.703 kb on + strand, within AO356_05490at 1230.703 kb on + strand, within AO356_05490at 1230.703 kb on + strand, within AO356_05490at 1230.703 kb on + strand, within AO356_05490at 1230.704 kb on - strand, within AO356_05490at 1230.764 kb on - strand, within AO356_05490

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml
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1,228,196 + AO356_05480 0.72 -0.2
1,228,196 + AO356_05480 0.72 +0.4
1,228,197 - AO356_05480 0.72 -0.9
1,228,197 - AO356_05480 0.72 +0.3
1,228,256 + AO356_05480 0.75 +0.7
1,228,256 + AO356_05480 0.75 +0.6
1,228,257 - AO356_05480 0.75 +0.6
1,228,257 - AO356_05480 0.75 +0.5
1,228,257 - AO356_05480 0.75 +0.1
1,228,257 - AO356_05480 0.75 -0.4
1,228,257 - AO356_05480 0.75 +0.1
1,228,257 - AO356_05480 0.75 -0.0
1,228,361 + AO356_05480 0.79 +1.0
1,228,544 + AO356_05480 0.87 -0.6
1,228,544 + AO356_05480 0.87 +0.9
1,228,545 - AO356_05480 0.87 -0.6
1,228,575 + AO356_05480 0.88 +0.5
1,228,575 + AO356_05480 0.88 +1.3
1,228,575 + AO356_05480 0.88 +0.3
1,228,576 - AO356_05480 0.88 +0.6
1,228,576 - AO356_05480 0.88 +0.6
1,228,678 + -0.1
1,228,678 + +0.7
1,228,757 + -0.5
1,228,758 - +0.6
1,228,758 - -0.8
1,228,758 - -0.2
1,228,758 - -2.1
1,228,793 + +0.1
1,228,794 - +1.4
1,228,871 + -0.5
1,228,871 + -0.3
1,228,871 + -0.2
1,228,872 - +0.4
1,228,872 - -0.6
1,228,894 + -0.3
1,228,894 + -0.6
1,228,895 - -0.7
1,228,895 - +1.0
1,228,895 - +0.7
1,228,895 - +0.3
1,228,898 - +0.6
1,228,898 - +0.6
1,228,898 - +0.1
1,228,898 - -0.2
1,228,898 - -0.9
1,228,898 - -1.0
1,228,898 - +0.9
1,228,898 - +0.1
1,228,898 - +1.6
1,228,898 - +1.4
1,228,953 + -0.1
1,228,953 + -0.3
1,229,041 + +0.9
1,229,042 - -1.2
1,229,077 + -1.1
1,229,078 - -0.0
1,229,078 - +0.2
1,229,142 - +0.0
1,229,142 - +1.6
1,229,142 - -0.3
1,229,162 + -0.2
1,229,162 + +1.0
1,229,163 - +0.4
1,229,163 - -0.4
1,229,243 + AO356_05485 0.13 -0.7
1,229,243 + AO356_05485 0.13 -1.1
1,229,243 + AO356_05485 0.13 -0.5
1,229,243 + AO356_05485 0.13 +0.3
1,229,244 - AO356_05485 0.13 -0.2
1,229,244 - AO356_05485 0.13 +0.4
1,229,244 - AO356_05485 0.13 +0.4
1,229,244 - AO356_05485 0.13 +0.9
1,229,346 + AO356_05485 0.23 -0.3
1,229,346 + AO356_05485 0.23 -0.5
1,229,346 + AO356_05485 0.23 +0.2
1,229,395 - AO356_05485 0.28 -0.0
1,229,395 - AO356_05485 0.28 +0.6
1,229,438 + AO356_05485 0.32 +0.4
1,229,438 + AO356_05485 0.32 +0.4
1,229,439 - AO356_05485 0.32 -0.9
1,229,439 - AO356_05485 0.32 -1.8
1,229,491 + AO356_05485 0.37 -0.3
1,229,491 + AO356_05485 0.37 +0.4
1,229,492 - AO356_05485 0.37 -0.2
1,229,492 - AO356_05485 0.37 +0.3
1,229,528 + AO356_05485 0.41 +0.5
1,229,528 + AO356_05485 0.41 -1.3
1,229,621 + AO356_05485 0.50 -0.3
1,229,622 - AO356_05485 0.50 -0.1
1,229,622 - AO356_05485 0.50 -0.4
1,229,622 - AO356_05485 0.50 +1.0
1,229,718 - AO356_05485 0.59 -0.2
1,229,753 + AO356_05485 0.62 -0.7
1,229,753 + AO356_05485 0.62 +0.8
1,229,753 + AO356_05485 0.62 -0.9
1,229,753 + AO356_05485 0.62 -0.6
1,229,753 + AO356_05485 0.62 -0.0
1,229,754 - AO356_05485 0.63 -0.1
1,229,754 - AO356_05485 0.63 -0.0
1,229,754 - AO356_05485 0.63 -1.1
1,229,754 - AO356_05485 0.63 -0.1
1,229,754 - AO356_05485 0.63 +1.7
1,229,754 - AO356_05485 0.63 +0.0
1,229,855 + AO356_05485 0.72 +0.1
1,230,157 + -0.1
1,230,158 - +0.4
1,230,158 - +0.3
1,230,158 - +1.0
1,230,214 + +0.9
1,230,214 + -1.3
1,230,214 + -0.0
1,230,214 + -0.3
1,230,214 + +1.2
1,230,214 + +1.1
1,230,215 - -0.3
1,230,215 - +0.5
1,230,215 - -0.1
1,230,256 + -0.4
1,230,256 + -1.7
1,230,257 - -0.1
1,230,361 + AO356_05490 0.13 -0.2
1,230,362 - AO356_05490 0.13 -0.8
1,230,401 + AO356_05490 0.16 +1.2
1,230,401 + AO356_05490 0.16 -0.3
1,230,402 - AO356_05490 0.16 +0.3
1,230,402 - AO356_05490 0.16 +0.7
1,230,405 - AO356_05490 0.16 +0.4
1,230,668 - AO356_05490 0.31 +0.2
1,230,703 + AO356_05490 0.34 -0.5
1,230,703 + AO356_05490 0.34 +0.6
1,230,703 + AO356_05490 0.34 -0.6
1,230,703 + AO356_05490 0.34 -0.4
1,230,704 - AO356_05490 0.34 +0.6
1,230,764 - AO356_05490 0.37 -0.2

Or see this region's nucleotide sequence