Experiment: Benzalkonium Chloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00075 and AO356_00080 are separated by 85 nucleotides AO356_00080 and AO356_00085 are separated by 14 nucleotides AO356_00085 and AO356_00090 overlap by 4 nucleotides AO356_00090 and AO356_00095 overlap by 4 nucleotides
AO356_00075: AO356_00075 - cobyrinic acid a,c-diamide synthase, at 15,122 to 15,964
_00075
AO356_00080: AO356_00080 - hypothetical protein, at 16,050 to 16,259
_00080
AO356_00085: AO356_00085 - chromosome partitioning protein ParB, at 16,274 to 17,845
_00085
AO356_00090: AO356_00090 - hypothetical protein, at 17,842 to 18,390
_00090
AO356_00095: AO356_00095 - hypothetical protein, at 18,387 to 19,574
_00095
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1
2 at 15.337 kb on - strand, within AO356_00075 at 15.337 kb on - strand, within AO356_00075 at 15.337 kb on - strand, within AO356_00075 at 15.404 kb on - strand, within AO356_00075 at 15.411 kb on + strand, within AO356_00075 at 15.411 kb on + strand, within AO356_00075 at 15.411 kb on + strand, within AO356_00075 at 15.412 kb on - strand, within AO356_00075 at 15.412 kb on - strand, within AO356_00075 at 15.414 kb on + strand, within AO356_00075 at 15.414 kb on + strand, within AO356_00075 at 15.415 kb on - strand, within AO356_00075 at 15.415 kb on - strand, within AO356_00075 at 15.415 kb on - strand, within AO356_00075 at 15.480 kb on + strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.508 kb on + strand, within AO356_00075 at 15.508 kb on + strand, within AO356_00075 at 15.509 kb on - strand, within AO356_00075 at 15.562 kb on + strand, within AO356_00075 at 15.562 kb on + strand, within AO356_00075 at 15.748 kb on + strand, within AO356_00075 at 15.748 kb on + strand, within AO356_00075 at 15.749 kb on - strand, within AO356_00075 at 15.749 kb on - strand, within AO356_00075 at 15.749 kb on - strand, within AO356_00075 at 15.766 kb on - strand, within AO356_00075 at 15.766 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.795 kb on - strand, within AO356_00075 at 15.935 kb on - strand at 15.983 kb on - strand at 15.983 kb on - strand at 15.983 kb on - strand at 16.044 kb on - strand at 16.107 kb on - strand, within AO356_00080 at 16.116 kb on + strand, within AO356_00080 at 16.119 kb on + strand, within AO356_00080 at 16.119 kb on + strand, within AO356_00080 at 16.119 kb on + strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.188 kb on + strand, within AO356_00080 at 16.373 kb on - strand at 16.378 kb on + strand at 16.409 kb on + strand at 16.446 kb on - strand, within AO356_00085 at 16.523 kb on + strand, within AO356_00085 at 16.524 kb on - strand, within AO356_00085 at 16.546 kb on + strand, within AO356_00085 at 16.547 kb on - strand, within AO356_00085 at 16.549 kb on + strand, within AO356_00085 at 16.550 kb on - strand, within AO356_00085 at 16.890 kb on + strand, within AO356_00085 at 16.894 kb on + strand, within AO356_00085 at 16.894 kb on + strand, within AO356_00085 at 16.895 kb on - strand, within AO356_00085 at 17.117 kb on - strand, within AO356_00085 at 17.236 kb on + strand, within AO356_00085 at 17.236 kb on + strand, within AO356_00085 at 17.237 kb on - strand, within AO356_00085 at 17.237 kb on - strand, within AO356_00085 at 17.320 kb on + strand, within AO356_00085 at 17.448 kb on + strand, within AO356_00085 at 17.448 kb on + strand, within AO356_00085 at 17.449 kb on - strand, within AO356_00085 at 17.449 kb on - strand, within AO356_00085 at 17.452 kb on + strand, within AO356_00085 at 17.453 kb on - strand, within AO356_00085 at 17.453 kb on - strand, within AO356_00085 at 17.483 kb on + strand, within AO356_00085 at 17.484 kb on - strand, within AO356_00085 at 17.484 kb on - strand, within AO356_00085 at 17.589 kb on + strand, within AO356_00085 at 17.589 kb on + strand, within AO356_00085 at 17.590 kb on - strand, within AO356_00085 at 17.590 kb on - strand, within AO356_00085 at 17.650 kb on - strand, within AO356_00085 at 17.676 kb on + strand, within AO356_00085 at 17.676 kb on + strand, within AO356_00085 at 17.677 kb on - strand, within AO356_00085 at 17.677 kb on - strand, within AO356_00085 at 17.677 kb on - strand, within AO356_00085 at 17.680 kb on - strand, within AO356_00085 at 17.688 kb on - strand at 17.688 kb on - strand at 17.688 kb on - strand at 17.688 kb on - strand at 17.724 kb on + strand at 17.724 kb on + strand at 17.724 kb on + strand at 17.724 kb on + strand at 17.724 kb on + strand at 17.724 kb on + strand at 17.773 kb on + strand at 17.774 kb on - strand at 17.775 kb on + strand at 17.775 kb on + strand at 17.776 kb on - strand at 17.776 kb on - strand at 17.776 kb on - strand at 17.776 kb on - strand at 17.776 kb on - strand at 17.956 kb on + strand, within AO356_00090 at 17.956 kb on + strand, within AO356_00090 at 17.956 kb on + strand, within AO356_00090 at 17.957 kb on - strand, within AO356_00090 at 17.957 kb on - strand, within AO356_00090 at 17.957 kb on - strand, within AO356_00090 at 17.957 kb on - strand, within AO356_00090 at 17.957 kb on - strand, within AO356_00090 at 17.957 kb on - strand, within AO356_00090 at 18.129 kb on + strand, within AO356_00090 at 18.129 kb on + strand, within AO356_00090 at 18.139 kb on + strand, within AO356_00090 at 18.139 kb on + strand, within AO356_00090 at 18.139 kb on + strand, within AO356_00090 at 18.139 kb on + strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.197 kb on + strand, within AO356_00090 at 18.198 kb on - strand, within AO356_00090 at 18.228 kb on - strand, within AO356_00090 at 18.272 kb on + strand, within AO356_00090 at 18.272 kb on + strand, within AO356_00090 at 18.272 kb on + strand, within AO356_00090 at 18.373 kb on + strand at 18.374 kb on - strand at 18.374 kb on - strand at 18.499 kb on + strand at 18.635 kb on + strand, within AO356_00095 at 18.635 kb on + strand, within AO356_00095 at 18.635 kb on + strand, within AO356_00095 at 18.635 kb on + strand, within AO356_00095 at 18.636 kb on - strand, within AO356_00095 at 18.636 kb on - strand, within AO356_00095 at 18.645 kb on + strand, within AO356_00095 at 18.663 kb on + strand, within AO356_00095 at 18.663 kb on + strand, within AO356_00095 at 18.790 kb on + strand, within AO356_00095 at 18.790 kb on + strand, within AO356_00095 at 18.804 kb on + strand, within AO356_00095 at 18.804 kb on + strand, within AO356_00095 at 18.804 kb on + strand, within AO356_00095 at 18.805 kb on - strand, within AO356_00095 at 18.805 kb on - strand, within AO356_00095
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.008 mg/ml remove 15,337 - AO356_00075 0.26 +0.8 15,337 - AO356_00075 0.26 +0.0 15,337 - AO356_00075 0.26 +0.4 15,404 - AO356_00075 0.33 +0.5 15,411 + AO356_00075 0.34 -1.2 15,411 + AO356_00075 0.34 -1.2 15,411 + AO356_00075 0.34 +0.1 15,412 - AO356_00075 0.34 +0.1 15,412 - AO356_00075 0.34 -0.6 15,414 + AO356_00075 0.35 +0.3 15,414 + AO356_00075 0.35 +0.0 15,415 - AO356_00075 0.35 -0.3 15,415 - AO356_00075 0.35 +0.5 15,415 - AO356_00075 0.35 +0.6 15,480 + AO356_00075 0.42 +0.1 15,481 - AO356_00075 0.43 +0.9 15,481 - AO356_00075 0.43 -0.5 15,481 - AO356_00075 0.43 +0.7 15,481 - AO356_00075 0.43 -0.4 15,481 - AO356_00075 0.43 +0.4 15,508 + AO356_00075 0.46 +0.4 15,508 + AO356_00075 0.46 +0.6 15,509 - AO356_00075 0.46 +1.8 15,562 + AO356_00075 0.52 +0.5 15,562 + AO356_00075 0.52 -0.0 15,748 + AO356_00075 0.74 -0.0 15,748 + AO356_00075 0.74 -0.2 15,749 - AO356_00075 0.74 -0.9 15,749 - AO356_00075 0.74 +0.6 15,749 - AO356_00075 0.74 +1.6 15,766 - AO356_00075 0.76 -0.2 15,766 - AO356_00075 0.76 +0.2 15,775 - AO356_00075 0.77 -0.5 15,775 - AO356_00075 0.77 -1.4 15,775 - AO356_00075 0.77 +1.7 15,775 - AO356_00075 0.77 -0.1 15,795 - AO356_00075 0.80 +1.0 15,935 - +0.0 15,983 - +0.1 15,983 - -0.4 15,983 - +0.1 16,044 - +0.5 16,107 - AO356_00080 0.27 +0.5 16,116 + AO356_00080 0.31 +0.7 16,119 + AO356_00080 0.33 +0.2 16,119 + AO356_00080 0.33 -0.8 16,119 + AO356_00080 0.33 -1.0 16,120 - AO356_00080 0.33 -0.2 16,120 - AO356_00080 0.33 +0.5 16,120 - AO356_00080 0.33 +0.5 16,120 - AO356_00080 0.33 -0.6 16,120 - AO356_00080 0.33 -0.6 16,188 + AO356_00080 0.66 -0.4 16,373 - -0.0 16,378 + +0.2 16,409 + -0.7 16,446 - AO356_00085 0.11 -0.9 16,523 + AO356_00085 0.16 +0.0 16,524 - AO356_00085 0.16 -0.2 16,546 + AO356_00085 0.17 +0.6 16,547 - AO356_00085 0.17 -1.3 16,549 + AO356_00085 0.17 -0.5 16,550 - AO356_00085 0.18 +0.5 16,890 + AO356_00085 0.39 +1.1 16,894 + AO356_00085 0.39 -0.4 16,894 + AO356_00085 0.39 -0.6 16,895 - AO356_00085 0.40 -1.2 17,117 - AO356_00085 0.54 -1.4 17,236 + AO356_00085 0.61 +0.3 17,236 + AO356_00085 0.61 +0.7 17,237 - AO356_00085 0.61 -1.4 17,237 - AO356_00085 0.61 -1.2 17,320 + AO356_00085 0.67 +0.1 17,448 + AO356_00085 0.75 +0.4 17,448 + AO356_00085 0.75 -0.1 17,449 - AO356_00085 0.75 +0.8 17,449 - AO356_00085 0.75 -0.4 17,452 + AO356_00085 0.75 +0.5 17,453 - AO356_00085 0.75 -0.5 17,453 - AO356_00085 0.75 -0.5 17,483 + AO356_00085 0.77 -0.6 17,484 - AO356_00085 0.77 -0.9 17,484 - AO356_00085 0.77 -0.1 17,589 + AO356_00085 0.84 -0.0 17,589 + AO356_00085 0.84 +0.2 17,590 - AO356_00085 0.84 +0.1 17,590 - AO356_00085 0.84 +0.1 17,650 - AO356_00085 0.88 +0.4 17,676 + AO356_00085 0.89 +0.8 17,676 + AO356_00085 0.89 -0.5 17,677 - AO356_00085 0.89 +0.4 17,677 - AO356_00085 0.89 -2.1 17,677 - AO356_00085 0.89 +1.2 17,680 - AO356_00085 0.89 +0.8 17,688 - -2.2 17,688 - +1.2 17,688 - -0.8 17,688 - +0.7 17,724 + -0.6 17,724 + -0.4 17,724 + +0.4 17,724 + -0.2 17,724 + +0.4 17,724 + +0.6 17,773 + +1.0 17,774 - -1.8 17,775 + +0.2 17,775 + +0.2 17,776 - +1.1 17,776 - +1.0 17,776 - +0.2 17,776 - +0.4 17,776 - -0.1 17,956 + AO356_00090 0.21 +0.1 17,956 + AO356_00090 0.21 -1.0 17,956 + AO356_00090 0.21 -0.3 17,957 - AO356_00090 0.21 -0.3 17,957 - AO356_00090 0.21 +1.4 17,957 - AO356_00090 0.21 -0.5 17,957 - AO356_00090 0.21 +0.1 17,957 - AO356_00090 0.21 +0.3 17,957 - AO356_00090 0.21 +0.5 18,129 + AO356_00090 0.52 +0.6 18,129 + AO356_00090 0.52 -0.5 18,139 + AO356_00090 0.54 -0.6 18,139 + AO356_00090 0.54 -0.5 18,139 + AO356_00090 0.54 -0.1 18,139 + AO356_00090 0.54 +1.6 18,140 - AO356_00090 0.54 +0.4 18,140 - AO356_00090 0.54 +0.1 18,140 - AO356_00090 0.54 -1.4 18,140 - AO356_00090 0.54 -0.0 18,140 - AO356_00090 0.54 -0.4 18,140 - AO356_00090 0.54 -0.2 18,140 - AO356_00090 0.54 +1.0 18,197 + AO356_00090 0.65 +0.6 18,198 - AO356_00090 0.65 -0.7 18,228 - AO356_00090 0.70 +0.9 18,272 + AO356_00090 0.78 +0.2 18,272 + AO356_00090 0.78 +0.7 18,272 + AO356_00090 0.78 +0.0 18,373 + +0.4 18,374 - +1.1 18,374 - +0.3 18,499 + +0.4 18,635 + AO356_00095 0.21 +0.6 18,635 + AO356_00095 0.21 -0.5 18,635 + AO356_00095 0.21 -1.5 18,635 + AO356_00095 0.21 +1.0 18,636 - AO356_00095 0.21 +1.5 18,636 - AO356_00095 0.21 +0.1 18,645 + AO356_00095 0.22 +1.0 18,663 + AO356_00095 0.23 -0.3 18,663 + AO356_00095 0.23 -0.4 18,790 + AO356_00095 0.34 -1.3 18,790 + AO356_00095 0.34 +0.7 18,804 + AO356_00095 0.35 -0.1 18,804 + AO356_00095 0.35 +0.6 18,804 + AO356_00095 0.35 -0.1 18,805 - AO356_00095 0.35 +1.6 18,805 - AO356_00095 0.35 +0.3
Or see this region's nucleotide sequence