Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003463

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,890,096	+		ABIE53_003462	0.42	-1.4
3,890,096	+		ABIE53_003462	0.42	+0.0
3,890,096	+		ABIE53_003462	0.42	+1.9
3,890,096	+		ABIE53_003462	0.42	+1.0
3,890,096	+		ABIE53_003462	0.42	+1.0
3,890,097	-		ABIE53_003462	0.42	+0.9
3,890,097	-		ABIE53_003462	0.42	+0.3
3,890,439	+		ABIE53_003462	0.65	+0.9
3,890,439	+		ABIE53_003462	0.65	-0.3
3,890,439	+		ABIE53_003462	0.65	+0.4
3,890,439	+		ABIE53_003462	0.65	+0.1
3,890,440	-		ABIE53_003462	0.65	+0.2
3,890,440	-		ABIE53_003462	0.65	+0.7
3,890,440	-		ABIE53_003462	0.65	-0.3
3,890,440	-		ABIE53_003462	0.65	+0.7
3,890,440	-		ABIE53_003462	0.65	-0.4
3,890,440	-		ABIE53_003462	0.65	-2.7
3,890,440	-		ABIE53_003462	0.65	-0.9
3,890,440	-		ABIE53_003462	0.65	+1.9
3,890,460	-		ABIE53_003462	0.66	+1.3
3,890,536	-		ABIE53_003462	0.71	-0.2
3,890,853	-				-1.1
3,890,853	-				-1.3
3,890,853	-				-1.8
3,890,853	-				-0.8
3,890,980	-				+3.9
3,890,989	+				+0.4
3,890,990	-				+1.3
3,890,990	-				+0.1
3,891,143	+		ABIE53_003463	0.22	+0.3
3,891,143	+		ABIE53_003463	0.22	-1.3
3,891,144	-		ABIE53_003463	0.22	-2.2
3,891,144	-		ABIE53_003463	0.22	-1.4
3,891,144	-		ABIE53_003463	0.22	-1.4
3,891,144	-		ABIE53_003463	0.22	-0.6
3,891,144	-		ABIE53_003463	0.22	-0.4
3,891,144	-		ABIE53_003463	0.22	-1.4
3,891,144	-		ABIE53_003463	0.22	-0.1
3,891,175	-		ABIE53_003463	0.28	-0.7
3,891,186	+		ABIE53_003463	0.30	-1.9
3,891,186	+		ABIE53_003463	0.30	-0.4
3,891,186	+		ABIE53_003463	0.30	-1.3
3,891,186	+		ABIE53_003463	0.30	-0.5
3,891,186	+		ABIE53_003463	0.30	-1.9
3,891,186	+		ABIE53_003463	0.30	+0.5
3,891,186	+		ABIE53_003463	0.30	+0.4
3,891,186	+		ABIE53_003463	0.30	+0.3
3,891,186	+		ABIE53_003463	0.30	-1.7
3,891,187	-		ABIE53_003463	0.30	-0.9
3,891,187	-		ABIE53_003463	0.30	-0.1
3,891,187	-		ABIE53_003463	0.30	-1.4
3,891,187	-		ABIE53_003463	0.30	-1.7
3,891,187	-		ABIE53_003463	0.30	+1.2
3,891,187	-		ABIE53_003463	0.30	+0.6
3,891,187	-		ABIE53_003463	0.30	+0.5
3,891,187	-		ABIE53_003463	0.30	-1.4
3,891,187	-		ABIE53_003463	0.30	-3.5
3,891,187	-		ABIE53_003463	0.30	-0.2
3,891,187	-		ABIE53_003463	0.30	-0.9
3,891,188	+		ABIE53_003463	0.31	-0.9
3,891,188	+		ABIE53_003463	0.31	-0.1
3,891,188	+		ABIE53_003463	0.31	+1.3
3,891,188	+		ABIE53_003463	0.31	-1.6
3,891,188	+		ABIE53_003463	0.31	+0.3
3,891,189	-		ABIE53_003463	0.31	-0.8
3,891,189	-		ABIE53_003463	0.31	-1.2
3,891,189	-		ABIE53_003463	0.31	-0.8
3,891,189	-		ABIE53_003463	0.31	-0.9
3,891,189	-		ABIE53_003463	0.31	+0.3
3,891,189	-		ABIE53_003463	0.31	-1.3
3,891,189	-		ABIE53_003463	0.31	+1.3
3,891,189	-		ABIE53_003463	0.31	-0.9
3,891,189	-		ABIE53_003463	0.31	+0.6
3,891,189	-		ABIE53_003463	0.31	-0.7
3,891,189	-		ABIE53_003463	0.31	-0.0
3,891,189	-		ABIE53_003463	0.31	+0.2
3,891,189	-		ABIE53_003463	0.31	+0.6
3,891,251	+		ABIE53_003463	0.43	-0.4
3,891,252	-		ABIE53_003463	0.43	-1.1
3,891,252	-		ABIE53_003463	0.43	-1.9
3,891,365	+		ABIE53_003463	0.65	-0.2
3,891,365	+		ABIE53_003463	0.65	-2.4
3,891,365	+		ABIE53_003463	0.65	+0.3
3,891,365	+		ABIE53_003463	0.65	+0.5
3,891,365	+		ABIE53_003463	0.65	-2.1
3,891,365	+		ABIE53_003463	0.65	+0.9
3,891,365	+		ABIE53_003463	0.65	+0.0
3,891,365	+		ABIE53_003463	0.65	+1.7
3,891,365	+		ABIE53_003463	0.65	-0.3
3,891,365	+		ABIE53_003463	0.65	-1.2
3,891,366	-		ABIE53_003463	0.65	-0.6
3,891,366	-		ABIE53_003463	0.65	-1.6
3,891,366	-		ABIE53_003463	0.65	-1.7
3,891,366	-		ABIE53_003463	0.65	-0.9
3,891,366	-		ABIE53_003463	0.65	-1.3
3,891,366	-		ABIE53_003463	0.65	-1.3
3,891,366	-		ABIE53_003463	0.65	-2.4
3,891,366	-		ABIE53_003463	0.65	-1.9
3,891,366	-		ABIE53_003463	0.65	-0.7
3,891,366	-		ABIE53_003463	0.65	-2.0
3,891,367	+		ABIE53_003463	0.65	-1.5
3,891,367	+		ABIE53_003463	0.65	-2.0
3,891,367	+		ABIE53_003463	0.65	-1.8
3,891,368	-		ABIE53_003463	0.65	-0.1
3,891,368	-		ABIE53_003463	0.65	-1.5
3,891,368	-		ABIE53_003463	0.65	-1.1
3,891,565	-				-1.4
3,891,655	+				-1.4
3,891,655	+				-0.3
3,891,655	+				+0.6
3,891,655	+				-2.7
3,891,655	+				+0.2
3,891,655	+				-2.1
3,891,655	+				+0.6
3,891,655	+				-0.2
3,891,655	+				-1.5
3,891,655	+				+0.5
3,891,655	+				-0.2
3,891,655	+				+7.5
3,891,655	+				-0.3
3,891,655	+				-0.7
3,891,655	+				-0.1
3,891,655	+				-0.1
3,891,656	-				+0.7
3,891,656	-				-0.1
3,891,656	-				+0.0
3,891,656	-				-0.3
3,891,656	-				-0.7
3,891,656	-				+1.0
3,891,656	-				+0.9
3,891,656	-				-1.0
3,891,656	-				+1.1
3,891,656	-				-0.3
3,891,656	-				-0.9
3,891,670	+				-1.3
3,891,670	+				-1.3
3,891,671	-				-0.9
3,891,671	-				-1.4
3,891,678	+				-0.9
3,891,678	+				-1.5
3,891,678	+				-0.1
3,891,679	-				-0.7
3,891,679	-				-0.6
3,891,679	-				+0.9
3,891,725	+				-0.6
3,891,846	+		ABIE53_003464	0.19	-0.3
3,891,847	-		ABIE53_003464	0.20	-1.2
3,891,848	+		ABIE53_003464	0.20	-0.9
3,891,848	+		ABIE53_003464	0.20	-2.5
3,891,848	+		ABIE53_003464	0.20	-0.4
3,891,848	+		ABIE53_003464	0.20	+0.8
3,891,848	+		ABIE53_003464	0.20	-0.7
3,891,848	+		ABIE53_003464	0.20	-0.7
3,891,848	+		ABIE53_003464	0.20	-0.3
3,891,849	-		ABIE53_003464	0.20	-1.1
3,891,849	-		ABIE53_003464	0.20	+1.9
3,891,849	-		ABIE53_003464	0.20	-0.1
3,891,849	-		ABIE53_003464	0.20	+0.0
3,891,946	+		ABIE53_003464	0.32	-0.7
3,891,946	+		ABIE53_003464	0.32	-1.4
3,891,946	+		ABIE53_003464	0.32	-0.4
3,891,947	-		ABIE53_003464	0.32	+0.1
3,891,947	-		ABIE53_003464	0.32	+0.9
3,891,947	-		ABIE53_003464	0.32	-0.1
3,891,947	-		ABIE53_003464	0.32	+0.0
3,891,986	+		ABIE53_003464	0.36	+1.9
3,891,992	+		ABIE53_003464	0.37	-2.9
3,891,992	+		ABIE53_003464	0.37	-1.7
3,891,992	+		ABIE53_003464	0.37	-0.1
3,891,992	+		ABIE53_003464	0.37	-0.7
3,891,992	+		ABIE53_003464	0.37	-1.9
3,891,993	-		ABIE53_003464	0.37	-0.7
3,891,993	-		ABIE53_003464	0.37	-2.0
3,891,993	-		ABIE53_003464	0.37	+0.3
3,892,004	+		ABIE53_003464	0.39	-1.3
3,892,004	+		ABIE53_003464	0.39	+1.2
3,892,004	+		ABIE53_003464	0.39	+1.5
3,892,004	+		ABIE53_003464	0.39	+0.9
3,892,004	+		ABIE53_003464	0.39	-1.4
3,892,004	+		ABIE53_003464	0.39	+1.0
3,892,004	+		ABIE53_003464	0.39	-1.4
3,892,004	+		ABIE53_003464	0.39	-0.7
3,892,004	+		ABIE53_003464	0.39	-1.6
3,892,005	-		ABIE53_003464	0.39	-1.5
3,892,005	-		ABIE53_003464	0.39	-0.4
3,892,005	-		ABIE53_003464	0.39	+0.5
3,892,022	+		ABIE53_003464	0.41	+0.2
3,892,022	+		ABIE53_003464	0.41	-0.8
3,892,022	+		ABIE53_003464	0.41	-0.7
3,892,022	+		ABIE53_003464	0.41	-0.7
3,892,023	-		ABIE53_003464	0.41	-1.3
3,892,023	-		ABIE53_003464	0.41	+0.9
3,892,023	-		ABIE53_003464	0.41	-0.9
3,892,103	+		ABIE53_003464	0.50	-0.8
3,892,104	-		ABIE53_003464	0.51	-0.8
3,892,104	-		ABIE53_003464	0.51	-1.0
3,892,196	+		ABIE53_003464	0.62	-1.1
3,892,196	+		ABIE53_003464	0.62	-2.8
3,892,197	-		ABIE53_003464	0.62	+0.7
3,892,197	-		ABIE53_003464	0.62	+0.2
3,892,197	-		ABIE53_003464	0.62	-0.6
3,892,197	-		ABIE53_003464	0.62	-0.4
3,892,197	-		ABIE53_003464	0.62	-0.9
3,892,235	+		ABIE53_003464	0.66	-1.5
3,892,235	+		ABIE53_003464	0.66	-1.1
3,892,236	-		ABIE53_003464	0.67	-0.9
3,892,236	-		ABIE53_003464	0.67	-0.4
3,892,236	-		ABIE53_003464	0.67	-0.2
3,892,250	+		ABIE53_003464	0.68	-1.7
3,892,250	+		ABIE53_003464	0.68	+1.9
3,892,250	+		ABIE53_003464	0.68	-0.7
3,892,250	+		ABIE53_003464	0.68	-1.6
3,892,250	+		ABIE53_003464	0.68	-1.4
3,892,250	+		ABIE53_003464	0.68	+0.6
3,892,250	+		ABIE53_003464	0.68	-1.8
3,892,251	-		ABIE53_003464	0.68	+0.3
3,892,251	-		ABIE53_003464	0.68	-2.5
3,892,251	-		ABIE53_003464	0.68	-1.8
3,892,251	-		ABIE53_003464	0.68	-2.3
3,892,251	-		ABIE53_003464	0.68	+1.9
3,892,251	-		ABIE53_003464	0.68	+3.9
3,892,251	-		ABIE53_003464	0.68	-1.3
3,892,251	-		ABIE53_003464	0.68	+0.1
3,892,257	+		ABIE53_003464	0.69	+0.0
3,892,257	+		ABIE53_003464	0.69	-1.4
3,892,257	+		ABIE53_003464	0.69	-2.7
3,892,258	-		ABIE53_003464	0.69	-1.8
3,892,258	-		ABIE53_003464	0.69	-1.9
3,892,258	-		ABIE53_003464	0.69	-0.4
3,892,258	-		ABIE53_003464	0.69	-3.2
3,892,259	+		ABIE53_003464	0.69	-1.2
3,892,259	+		ABIE53_003464	0.69	+1.9
3,892,259	+		ABIE53_003464	0.69	-0.8
3,892,259	+		ABIE53_003464	0.69	+1.5
3,892,259	+		ABIE53_003464	0.69	+1.1
3,892,259	+		ABIE53_003464	0.69	-0.7
3,892,259	+		ABIE53_003464	0.69	+0.9
3,892,259	+		ABIE53_003464	0.69	+1.6
3,892,259	+		ABIE53_003464	0.69	-0.4
3,892,259	+		ABIE53_003464	0.69	-0.1
3,892,259	+		ABIE53_003464	0.69	+0.1
3,892,259	+		ABIE53_003464	0.69	+0.3
3,892,259	+		ABIE53_003464	0.69	-1.6
3,892,259	+		ABIE53_003464	0.69	+1.2
3,892,259	+		ABIE53_003464	0.69	-1.5
3,892,259	+		ABIE53_003464	0.69	-0.5
3,892,259	+		ABIE53_003464	0.69	-1.2
3,892,260	-		ABIE53_003464	0.69	-1.1
3,892,260	-		ABIE53_003464	0.69	-0.2
3,892,260	-		ABIE53_003464	0.69	-0.7
3,892,260	-		ABIE53_003464	0.69	-0.1
3,892,260	-		ABIE53_003464	0.69	-0.3
3,892,260	-		ABIE53_003464	0.69	-0.7
3,892,260	-		ABIE53_003464	0.69	+1.2
3,892,260	-		ABIE53_003464	0.69	-1.0
3,892,260	-		ABIE53_003464	0.69	-1.3
3,892,260	-		ABIE53_003464	0.69	+1.9
3,892,260	-		ABIE53_003464	0.69	-1.4
3,892,260	-		ABIE53_003464	0.69	+0.1
3,892,260	-		ABIE53_003464	0.69	-1.9
3,892,260	-		ABIE53_003464	0.69	+0.1
3,892,260	-		ABIE53_003464	0.69	-0.6
3,892,260	-		ABIE53_003464	0.69	+0.5
3,892,260	-		ABIE53_003464	0.69	-1.6
3,892,260	-		ABIE53_003464	0.69	-1.3
3,892,260	-		ABIE53_003464	0.69	-2.6
3,892,260	-		ABIE53_003464	0.69	-1.0
3,892,260	-		ABIE53_003464	0.69	-2.0
3,892,359	+		ABIE53_003464	0.81	+0.1
3,892,359	+		ABIE53_003464	0.81	-2.0
3,892,359	+		ABIE53_003464	0.81	-0.8
3,892,360	-		ABIE53_003464	0.82	+0.3
3,892,360	-		ABIE53_003464	0.82	-1.6
3,892,360	-		ABIE53_003464	0.82	-0.8
3,892,360	-		ABIE53_003464	0.82	-0.9
3,892,360	-		ABIE53_003464	0.82	+0.9
3,892,360	-		ABIE53_003464	0.82	-0.8
3,892,360	-		ABIE53_003464	0.82	-0.7
3,892,367	+		ABIE53_003464	0.82	-2.4
3,892,367	+		ABIE53_003464	0.82	-1.2
3,892,367	+		ABIE53_003464	0.82	+1.3
3,892,368	-		ABIE53_003464	0.82	-1.1
3,892,368	-		ABIE53_003464	0.82	-0.9
3,892,389	+		ABIE53_003464	0.85	+0.2
3,892,390	-		ABIE53_003464	0.85	+0.3
3,892,534	+				-0.1
3,892,534	+				-2.3
3,892,534	+				-1.1
3,892,535	-				+1.2