Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000592 and ABIE53_000593 are separated by 231 nucleotides ABIE53_000593 and ABIE53_000594 are separated by 123 nucleotides
ABIE53_000592: ABIE53_000592 - isocitrate dehydrogenase kinase/phosphatase, at 648,979 to 650,835
_000592
ABIE53_000593: ABIE53_000593 - DNA-binding transcriptional MerR regulator, at 651,067 to 651,534
_000593
ABIE53_000594: ABIE53_000594 - glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily II), at 651,658 to 652,728
_000594
Position (kb) 651
652 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 650.175 kb on + strand, within ABIE53_000592 at 650.176 kb on - strand, within ABIE53_000592 at 650.176 kb on - strand, within ABIE53_000592 at 650.176 kb on - strand, within ABIE53_000592 at 650.177 kb on + strand, within ABIE53_000592 at 650.178 kb on - strand, within ABIE53_000592 at 650.178 kb on - strand, within ABIE53_000592 at 650.178 kb on - strand, within ABIE53_000592 at 650.178 kb on - strand, within ABIE53_000592 at 650.178 kb on - strand, within ABIE53_000592 at 650.375 kb on + strand, within ABIE53_000592 at 650.375 kb on + strand, within ABIE53_000592 at 650.376 kb on - strand, within ABIE53_000592 at 650.378 kb on + strand, within ABIE53_000592 at 650.378 kb on + strand, within ABIE53_000592 at 650.379 kb on - strand, within ABIE53_000592 at 650.379 kb on - strand, within ABIE53_000592 at 650.379 kb on - strand, within ABIE53_000592 at 650.379 kb on - strand, within ABIE53_000592 at 650.379 kb on - strand, within ABIE53_000592 at 650.388 kb on - strand, within ABIE53_000592 at 650.388 kb on - strand, within ABIE53_000592 at 650.420 kb on + strand, within ABIE53_000592 at 650.421 kb on + strand, within ABIE53_000592 at 650.421 kb on + strand, within ABIE53_000592 at 650.421 kb on + strand, within ABIE53_000592 at 650.422 kb on - strand, within ABIE53_000592 at 650.423 kb on + strand, within ABIE53_000592 at 650.424 kb on - strand, within ABIE53_000592 at 650.424 kb on - strand, within ABIE53_000592 at 650.424 kb on - strand, within ABIE53_000592 at 650.424 kb on - strand, within ABIE53_000592 at 650.471 kb on + strand, within ABIE53_000592 at 650.471 kb on + strand, within ABIE53_000592 at 650.472 kb on - strand, within ABIE53_000592 at 650.558 kb on + strand, within ABIE53_000592 at 650.558 kb on + strand, within ABIE53_000592 at 650.558 kb on + strand, within ABIE53_000592 at 650.558 kb on + strand, within ABIE53_000592 at 650.558 kb on + strand, within ABIE53_000592 at 650.559 kb on - strand, within ABIE53_000592 at 650.559 kb on - strand, within ABIE53_000592 at 650.559 kb on - strand, within ABIE53_000592 at 650.559 kb on - strand, within ABIE53_000592 at 650.559 kb on - strand, within ABIE53_000592 at 650.609 kb on + strand, within ABIE53_000592 at 650.654 kb on + strand at 650.654 kb on + strand at 650.654 kb on + strand at 650.654 kb on + strand at 650.654 kb on + strand at 650.655 kb on - strand at 650.655 kb on - strand at 650.655 kb on - strand at 650.661 kb on + strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.754 kb on - strand at 650.880 kb on + strand at 650.880 kb on + strand at 650.880 kb on + strand at 650.880 kb on + strand at 650.880 kb on + strand at 650.881 kb on - strand at 650.881 kb on - strand at 651.004 kb on - strand at 651.047 kb on + strand at 651.047 kb on + strand at 651.048 kb on - strand at 651.048 kb on - strand at 651.188 kb on + strand, within ABIE53_000593 at 651.188 kb on + strand, within ABIE53_000593 at 651.311 kb on + strand, within ABIE53_000593 at 651.311 kb on + strand, within ABIE53_000593 at 651.311 kb on + strand, within ABIE53_000593 at 651.312 kb on - strand, within ABIE53_000593 at 651.312 kb on - strand, within ABIE53_000593 at 651.404 kb on + strand, within ABIE53_000593 at 651.405 kb on - strand, within ABIE53_000593 at 651.465 kb on - strand, within ABIE53_000593 at 651.472 kb on + strand, within ABIE53_000593 at 651.472 kb on + strand, within ABIE53_000593 at 651.472 kb on + strand, within ABIE53_000593 at 651.473 kb on - strand, within ABIE53_000593 at 651.473 kb on - strand, within ABIE53_000593 at 651.473 kb on - strand, within ABIE53_000593 at 651.473 kb on - strand, within ABIE53_000593 at 651.473 kb on - strand, within ABIE53_000593 at 651.521 kb on + strand at 651.521 kb on + strand at 651.521 kb on + strand at 651.522 kb on - strand at 651.522 kb on - strand at 651.522 kb on - strand at 651.588 kb on + strand at 651.588 kb on + strand at 651.629 kb on + strand at 651.630 kb on - strand at 651.783 kb on + strand, within ABIE53_000594 at 652.033 kb on + strand, within ABIE53_000594 at 652.033 kb on + strand, within ABIE53_000594 at 652.033 kb on + strand, within ABIE53_000594 at 652.033 kb on + strand, within ABIE53_000594 at 652.033 kb on + strand, within ABIE53_000594 at 652.162 kb on + strand, within ABIE53_000594 at 652.162 kb on + strand, within ABIE53_000594 at 652.162 kb on + strand, within ABIE53_000594 at 652.162 kb on + strand, within ABIE53_000594 at 652.162 kb on + strand, within ABIE53_000594 at 652.162 kb on + strand, within ABIE53_000594 at 652.162 kb on + strand, within ABIE53_000594 at 652.162 kb on + strand, within ABIE53_000594 at 652.163 kb on - strand, within ABIE53_000594 at 652.163 kb on - strand, within ABIE53_000594 at 652.163 kb on - strand, within ABIE53_000594 at 652.163 kb on - strand, within ABIE53_000594 at 652.165 kb on + strand, within ABIE53_000594 at 652.165 kb on + strand, within ABIE53_000594 at 652.198 kb on + strand, within ABIE53_000594 at 652.345 kb on - strand, within ABIE53_000594 at 652.345 kb on - strand, within ABIE53_000594 at 652.345 kb on - strand, within ABIE53_000594 at 652.402 kb on + strand, within ABIE53_000594 at 652.402 kb on + strand, within ABIE53_000594 at 652.424 kb on - strand, within ABIE53_000594 at 652.430 kb on + strand, within ABIE53_000594 at 652.430 kb on + strand, within ABIE53_000594 at 652.430 kb on + strand, within ABIE53_000594 at 652.430 kb on + strand, within ABIE53_000594 at 652.431 kb on - strand, within ABIE53_000594 at 652.431 kb on - strand, within ABIE53_000594 at 652.431 kb on - strand, within ABIE53_000594 at 652.431 kb on - strand, within ABIE53_000594 at 652.431 kb on - strand, within ABIE53_000594 at 652.431 kb on - strand, within ABIE53_000594
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 650,175 + ABIE53_000592 0.64 -1.1 650,176 - ABIE53_000592 0.64 -1.3 650,176 - ABIE53_000592 0.64 +0.3 650,176 - ABIE53_000592 0.64 -0.4 650,177 + ABIE53_000592 0.65 -1.9 650,178 - ABIE53_000592 0.65 -2.0 650,178 - ABIE53_000592 0.65 -0.2 650,178 - ABIE53_000592 0.65 +1.3 650,178 - ABIE53_000592 0.65 -0.7 650,178 - ABIE53_000592 0.65 +3.9 650,375 + ABIE53_000592 0.75 +0.1 650,375 + ABIE53_000592 0.75 -0.9 650,376 - ABIE53_000592 0.75 -1.1 650,378 + ABIE53_000592 0.75 -1.3 650,378 + ABIE53_000592 0.75 +0.0 650,379 - ABIE53_000592 0.75 -1.2 650,379 - ABIE53_000592 0.75 -0.3 650,379 - ABIE53_000592 0.75 -1.1 650,379 - ABIE53_000592 0.75 -1.7 650,379 - ABIE53_000592 0.75 +0.5 650,388 - ABIE53_000592 0.76 -1.9 650,388 - ABIE53_000592 0.76 -0.9 650,420 + ABIE53_000592 0.78 -1.2 650,421 + ABIE53_000592 0.78 -1.4 650,421 + ABIE53_000592 0.78 -0.5 650,421 + ABIE53_000592 0.78 -1.2 650,422 - ABIE53_000592 0.78 -2.4 650,423 + ABIE53_000592 0.78 -0.1 650,424 - ABIE53_000592 0.78 -1.7 650,424 - ABIE53_000592 0.78 -0.3 650,424 - ABIE53_000592 0.78 -1.1 650,424 - ABIE53_000592 0.78 -0.4 650,471 + ABIE53_000592 0.80 +1.9 650,471 + ABIE53_000592 0.80 -0.3 650,472 - ABIE53_000592 0.80 -0.8 650,558 + ABIE53_000592 0.85 -1.5 650,558 + ABIE53_000592 0.85 +0.0 650,558 + ABIE53_000592 0.85 -0.4 650,558 + ABIE53_000592 0.85 -1.0 650,558 + ABIE53_000592 0.85 +0.5 650,559 - ABIE53_000592 0.85 -1.4 650,559 - ABIE53_000592 0.85 -1.6 650,559 - ABIE53_000592 0.85 -1.4 650,559 - ABIE53_000592 0.85 -0.7 650,559 - ABIE53_000592 0.85 -0.5 650,609 + ABIE53_000592 0.88 -1.6 650,654 + -1.1 650,654 + +1.2 650,654 + -2.4 650,654 + -0.1 650,654 + -0.5 650,655 - -0.8 650,655 - -1.6 650,655 - +0.5 650,661 + -1.6 650,662 - -1.2 650,662 - +0.9 650,662 - -0.1 650,662 - +0.7 650,662 - -1.3 650,662 - -0.4 650,662 - -1.2 650,662 - +1.9 650,754 - -0.7 650,880 + +0.3 650,880 + -0.2 650,880 + -2.2 650,880 + +0.9 650,880 + -1.6 650,881 - -1.8 650,881 - +0.3 651,004 - +0.9 651,047 + -1.8 651,047 + +0.6 651,048 - +0.0 651,048 - -1.4 651,188 + ABIE53_000593 0.26 -0.7 651,188 + ABIE53_000593 0.26 -0.3 651,311 + ABIE53_000593 0.52 +0.6 651,311 + ABIE53_000593 0.52 -1.1 651,311 + ABIE53_000593 0.52 -1.8 651,312 - ABIE53_000593 0.52 +0.9 651,312 - ABIE53_000593 0.52 +0.5 651,404 + ABIE53_000593 0.72 +0.1 651,405 - ABIE53_000593 0.72 +1.2 651,465 - ABIE53_000593 0.85 -0.1 651,472 + ABIE53_000593 0.87 -1.4 651,472 + ABIE53_000593 0.87 -0.4 651,472 + ABIE53_000593 0.87 +1.3 651,473 - ABIE53_000593 0.87 -1.9 651,473 - ABIE53_000593 0.87 -1.1 651,473 - ABIE53_000593 0.87 +0.0 651,473 - ABIE53_000593 0.87 -0.9 651,473 - ABIE53_000593 0.87 -2.7 651,521 + -0.9 651,521 + -0.7 651,521 + -2.3 651,522 - +0.3 651,522 - -1.6 651,522 - -0.8 651,588 + -2.0 651,588 + +0.9 651,629 + +0.4 651,630 - +1.3 651,783 + ABIE53_000594 0.12 -0.5 652,033 + ABIE53_000594 0.35 -1.1 652,033 + ABIE53_000594 0.35 +1.9 652,033 + ABIE53_000594 0.35 +0.3 652,033 + ABIE53_000594 0.35 +0.2 652,033 + ABIE53_000594 0.35 -0.6 652,162 + ABIE53_000594 0.47 +1.9 652,162 + ABIE53_000594 0.47 +0.3 652,162 + ABIE53_000594 0.47 +0.4 652,162 + ABIE53_000594 0.47 +2.5 652,162 + ABIE53_000594 0.47 -1.1 652,162 + ABIE53_000594 0.47 -0.6 652,162 + ABIE53_000594 0.47 -0.4 652,162 + ABIE53_000594 0.47 -0.9 652,163 - ABIE53_000594 0.47 +2.8 652,163 - ABIE53_000594 0.47 -1.0 652,163 - ABIE53_000594 0.47 +0.1 652,163 - ABIE53_000594 0.47 -1.3 652,165 + ABIE53_000594 0.47 -0.4 652,165 + ABIE53_000594 0.47 +1.3 652,198 + ABIE53_000594 0.50 -1.0 652,345 - ABIE53_000594 0.64 -2.6 652,345 - ABIE53_000594 0.64 +1.9 652,345 - ABIE53_000594 0.64 -1.7 652,402 + ABIE53_000594 0.69 +1.7 652,402 + ABIE53_000594 0.69 -1.2 652,424 - ABIE53_000594 0.72 +0.0 652,430 + ABIE53_000594 0.72 -0.4 652,430 + ABIE53_000594 0.72 -0.4 652,430 + ABIE53_000594 0.72 -2.0 652,430 + ABIE53_000594 0.72 -0.1 652,431 - ABIE53_000594 0.72 -1.5 652,431 - ABIE53_000594 0.72 -0.0 652,431 - ABIE53_000594 0.72 -1.6 652,431 - ABIE53_000594 0.72 +2.1 652,431 - ABIE53_000594 0.72 -1.6 652,431 - ABIE53_000594 0.72 -2.5
Or see this region's nucleotide sequence