Experiment: MoYLS4 with Neomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1837 and DvMF_1838 overlap by 8 nucleotides DvMF_1838 and DvMF_1839 are separated by 57 nucleotides
DvMF_1837: DvMF_1837 - glycosyl transferase family 2 (RefSeq), at 2,246,324 to 2,247,376
_1837
DvMF_1838: DvMF_1838 - Radical SAM domain protein (RefSeq), at 2,247,369 to 2,248,844
_1838
DvMF_1839: DvMF_1839 - Methyltransferase type 11 (RefSeq), at 2,248,902 to 2,250,038
_1839
Position (kb)
2247
2248
2249 Strain fitness (log2 ratio)
-1
0
1 at 2246.381 kb on - strand at 2246.388 kb on + strand at 2246.445 kb on + strand, within DvMF_1837 at 2246.687 kb on - strand, within DvMF_1837 at 2247.278 kb on + strand at 2247.311 kb on + strand at 2247.652 kb on - strand, within DvMF_1838 at 2247.667 kb on + strand, within DvMF_1838 at 2247.779 kb on + strand, within DvMF_1838 at 2247.804 kb on - strand, within DvMF_1838 at 2247.825 kb on - strand, within DvMF_1838 at 2247.863 kb on + strand, within DvMF_1838 at 2247.871 kb on - strand, within DvMF_1838 at 2247.916 kb on - strand, within DvMF_1838 at 2248.023 kb on + strand, within DvMF_1838 at 2248.144 kb on + strand, within DvMF_1838 at 2248.152 kb on - strand, within DvMF_1838 at 2248.157 kb on - strand, within DvMF_1838 at 2248.235 kb on - strand, within DvMF_1838 at 2248.274 kb on + strand, within DvMF_1838 at 2248.302 kb on + strand, within DvMF_1838 at 2248.341 kb on + strand, within DvMF_1838 at 2248.421 kb on - strand, within DvMF_1838 at 2248.436 kb on - strand, within DvMF_1838 at 2248.728 kb on - strand at 2248.834 kb on + strand at 2248.841 kb on - strand at 2249.217 kb on - strand, within DvMF_1839 at 2249.398 kb on - strand, within DvMF_1839 at 2249.484 kb on + strand, within DvMF_1839 at 2249.484 kb on + strand, within DvMF_1839 at 2249.492 kb on - strand, within DvMF_1839 at 2249.492 kb on - strand, within DvMF_1839 at 2249.750 kb on + strand, within DvMF_1839 at 2249.816 kb on + strand, within DvMF_1839 at 2249.818 kb on - strand, within DvMF_1839 at 2249.828 kb on - strand, within DvMF_1839
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Neomycin 0.125 mg/ml remove 2,246,381 - -0.2 2,246,388 + +0.7 2,246,445 + DvMF_1837 0.11 -1.3 2,246,687 - DvMF_1837 0.34 -0.4 2,247,278 + -0.8 2,247,311 + -0.5 2,247,652 - DvMF_1838 0.19 -0.3 2,247,667 + DvMF_1838 0.20 -0.2 2,247,779 + DvMF_1838 0.28 -0.3 2,247,804 - DvMF_1838 0.29 -0.4 2,247,825 - DvMF_1838 0.31 -0.6 2,247,863 + DvMF_1838 0.33 +0.5 2,247,871 - DvMF_1838 0.34 -0.3 2,247,916 - DvMF_1838 0.37 -0.1 2,248,023 + DvMF_1838 0.44 +0.2 2,248,144 + DvMF_1838 0.53 -0.2 2,248,152 - DvMF_1838 0.53 -0.8 2,248,157 - DvMF_1838 0.53 -0.9 2,248,235 - DvMF_1838 0.59 -0.3 2,248,274 + DvMF_1838 0.61 -0.2 2,248,302 + DvMF_1838 0.63 -0.7 2,248,341 + DvMF_1838 0.66 -0.1 2,248,421 - DvMF_1838 0.71 +0.6 2,248,436 - DvMF_1838 0.72 -0.5 2,248,728 - -0.6 2,248,834 + -0.2 2,248,841 - +0.4 2,249,217 - DvMF_1839 0.28 -0.8 2,249,398 - DvMF_1839 0.44 -0.6 2,249,484 + DvMF_1839 0.51 -0.4 2,249,484 + DvMF_1839 0.51 -0.6 2,249,492 - DvMF_1839 0.52 -0.8 2,249,492 - DvMF_1839 0.52 -0.3 2,249,750 + DvMF_1839 0.75 -0.3 2,249,816 + DvMF_1839 0.80 -0.3 2,249,818 - DvMF_1839 0.81 -0.1 2,249,828 - DvMF_1839 0.81 -0.2
Or see this region's nucleotide sequence