Strain Fitness in Shewanella loihica PV-4 around Shew_3801

Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 10 mM
4,521,760	-		Shew_3800	0.42	-1.5
4,521,827	-		Shew_3800	0.48	-0.1
4,521,838	+		Shew_3800	0.49	+1.4
4,521,846	-		Shew_3800	0.50	+0.3
4,521,958	-		Shew_3800	0.60	-1.9
4,521,958	-		Shew_3800	0.60	-0.5
4,521,963	-		Shew_3800	0.61	-2.0
4,521,976	+		Shew_3800	0.62	-0.2
4,522,120	+		Shew_3800	0.75	+0.4
4,522,261	-		Shew_3800	0.88	-0.1
4,522,261	-		Shew_3800	0.88	-0.0
4,522,261	-		Shew_3800	0.88	+0.0
4,522,268	-		Shew_3800	0.88	-0.1
4,522,333	-				-2.8
4,522,505	+				+0.6
4,522,524	-				-0.5
4,522,529	-				+0.4
4,522,557	+				-0.2
4,522,560	-				+1.4
4,522,565	+				+0.2
4,522,616	-				+0.2
4,522,674	-				+0.2
4,522,674	-				+1.2
4,522,687	-				+0.7
4,522,687	-				+0.0
4,522,687	-				-1.8
4,522,687	-				+0.0
4,522,687	-				+0.2
4,522,719	-				-1.3
4,522,722	-				-0.0
4,522,722	+				-0.6
4,522,726	+				+0.3
4,522,726	+				-0.0
4,522,726	+				+0.7
4,522,734	-				+0.7
4,522,734	-				+0.2
4,522,735	+				+0.3
4,522,737	+				+0.4
4,522,737	+				+1.8
4,522,737	+				+0.3
4,522,745	-				+0.3
4,522,745	-				+0.2
4,522,746	+				-1.7
4,522,754	-				-0.1
4,522,767	-				-1.2
4,522,770	-				+0.5
4,522,774	+				+0.5
4,522,774	+				-0.2
4,522,780	-				+0.4
4,522,782	-				+0.5
4,522,798	-				-0.9
4,522,821	+				+0.7
4,522,824	-				-1.3
4,522,882	+				-0.2
4,522,913	+		Shew_3801	0.10	+0.2
4,522,921	-		Shew_3801	0.11	+0.5
4,522,936	-		Shew_3801	0.11	-0.4
4,522,936	-		Shew_3801	0.11	+0.1
4,522,941	-		Shew_3801	0.12	+0.3
4,522,946	-		Shew_3801	0.12	-1.1
4,522,949	-		Shew_3801	0.12	-0.1
4,522,954	+		Shew_3801	0.12	+1.5
4,522,961	-		Shew_3801	0.12	+0.1
4,522,978	-		Shew_3801	0.13	-0.2
4,523,028	+		Shew_3801	0.15	+0.5
4,523,028	+		Shew_3801	0.15	+0.1
4,523,038	+		Shew_3801	0.16	+0.5
4,523,038	+		Shew_3801	0.16	+0.6
4,523,038	+		Shew_3801	0.16	+1.7
4,523,046	-		Shew_3801	0.16	-1.2
4,523,046	-		Shew_3801	0.16	-0.1
4,523,046	-		Shew_3801	0.16	+0.0
4,523,046	-		Shew_3801	0.16	-2.2
4,523,046	-		Shew_3801	0.16	-1.2
4,523,046	-		Shew_3801	0.16	+1.7
4,523,046	-		Shew_3801	0.16	-0.1
4,523,046	-		Shew_3801	0.16	-1.9
4,523,056	-		Shew_3801	0.17	+0.1
4,523,060	-		Shew_3801	0.17	+0.2
4,523,060	-		Shew_3801	0.17	-1.1
4,523,070	-		Shew_3801	0.17	-0.6
4,523,070	-		Shew_3801	0.17	-0.1
4,523,105	+		Shew_3801	0.19	+0.7
4,523,113	-		Shew_3801	0.19	-0.2
4,523,136	-		Shew_3801	0.20	-0.1
4,523,136	-		Shew_3801	0.20	+0.1
4,523,144	-		Shew_3801	0.21	+0.7
4,523,216	+		Shew_3801	0.24	-2.1
4,523,224	-		Shew_3801	0.24	-1.1
4,523,240	+		Shew_3801	0.25	+0.1
4,523,240	+		Shew_3801	0.25	+0.8
4,523,248	-		Shew_3801	0.25	+0.2
4,523,248	-		Shew_3801	0.25	-0.3
4,523,248	-		Shew_3801	0.25	+1.1
4,523,285	+		Shew_3801	0.27	+0.8
4,523,285	+		Shew_3801	0.27	+0.9
4,523,293	-		Shew_3801	0.27	+0.1
4,523,294	-		Shew_3801	0.27	+0.2
4,523,298	+		Shew_3801	0.27	+0.8
4,523,298	+		Shew_3801	0.27	+0.8
4,523,298	+		Shew_3801	0.27	+0.6
4,523,298	+		Shew_3801	0.27	+0.2
4,523,311	+		Shew_3801	0.28	+0.2
4,523,311	+		Shew_3801	0.28	+1.1
4,523,311	+		Shew_3801	0.28	-0.1
4,523,319	-		Shew_3801	0.28	-0.2
4,523,321	+		Shew_3801	0.28	+0.5
4,523,328	-		Shew_3801	0.29	+0.1
4,523,328	-		Shew_3801	0.29	-1.7
4,523,355	+		Shew_3801	0.30	+0.9
4,523,355	+		Shew_3801	0.30	+0.0
4,523,355	+		Shew_3801	0.30	-0.6
4,523,355	+		Shew_3801	0.30	+1.3
4,523,355	+		Shew_3801	0.30	+0.5
4,523,355	+		Shew_3801	0.30	-3.7
4,523,355	+		Shew_3801	0.30	-0.3
4,523,355	+		Shew_3801	0.30	-0.3
4,523,355	+		Shew_3801	0.30	-0.2
4,523,363	-		Shew_3801	0.30	+0.2
4,523,363	-		Shew_3801	0.30	-1.0
4,523,363	-		Shew_3801	0.30	-0.1
4,523,377	+		Shew_3801	0.31	-0.1
4,523,378	+		Shew_3801	0.31	+1.1
4,523,392	-		Shew_3801	0.32	+0.4
4,523,404	+		Shew_3801	0.32	-1.2
4,523,412	-		Shew_3801	0.33	-0.2
4,523,414	+		Shew_3801	0.33	-0.5
4,523,428	+		Shew_3801	0.33	-0.1
4,523,433	+		Shew_3801	0.33	+0.1
4,523,433	+		Shew_3801	0.33	-0.2
4,523,433	+		Shew_3801	0.33	+0.3
4,523,433	+		Shew_3801	0.33	-0.1
4,523,433	+		Shew_3801	0.33	-0.3
4,523,434	+		Shew_3801	0.34	+0.4
4,523,441	-		Shew_3801	0.34	-0.1
4,523,441	+		Shew_3801	0.34	+1.9
4,523,441	-		Shew_3801	0.34	-0.3
4,523,441	-		Shew_3801	0.34	+1.2
4,523,441	-		Shew_3801	0.34	-0.8
4,523,441	-		Shew_3801	0.34	-0.7
4,523,442	-		Shew_3801	0.34	-0.9
4,523,448	+		Shew_3801	0.34	+0.0
4,523,448	-		Shew_3801	0.34	+0.1
4,523,466	+		Shew_3801	0.35	+1.1
4,523,474	-		Shew_3801	0.35	+0.3
4,523,476	+		Shew_3801	0.35	+1.7
4,523,476	+		Shew_3801	0.35	+1.1
4,523,476	+		Shew_3801	0.35	+0.5
4,523,476	+		Shew_3801	0.35	+1.3
4,523,483	-		Shew_3801	0.36	+0.9
4,523,484	-		Shew_3801	0.36	-0.8
4,523,508	+		Shew_3801	0.37	+0.2
4,523,508	+		Shew_3801	0.37	-3.2
4,523,508	+		Shew_3801	0.37	+0.9
4,523,532	+		Shew_3801	0.38	-0.1
4,523,532	+		Shew_3801	0.38	-0.1
4,523,532	+		Shew_3801	0.38	+0.9
4,523,532	+		Shew_3801	0.38	+0.4
4,523,532	+		Shew_3801	0.38	-0.4
4,523,540	-		Shew_3801	0.38	+0.3
4,523,540	-		Shew_3801	0.38	+0.7
4,523,540	-		Shew_3801	0.38	-1.2
4,523,540	-		Shew_3801	0.38	+0.3
4,523,540	-		Shew_3801	0.38	+0.1
4,523,540	-		Shew_3801	0.38	-2.1
4,523,540	-		Shew_3801	0.38	+0.4
4,523,540	-		Shew_3801	0.38	-3.8
4,523,551	+		Shew_3801	0.39	+0.4
4,523,566	-		Shew_3801	0.39	-0.7
4,523,602	+		Shew_3801	0.41	+0.3
4,523,682	+		Shew_3801	0.45	+0.3
4,523,682	+		Shew_3801	0.45	-0.0
4,523,703	+		Shew_3801	0.45	-0.3
4,523,703	+		Shew_3801	0.45	+0.2
4,523,703	+		Shew_3801	0.45	-0.1
4,523,703	+		Shew_3801	0.45	-1.2
4,523,703	+		Shew_3801	0.45	+0.3
4,523,703	+		Shew_3801	0.45	+0.5
4,523,705	+		Shew_3801	0.46	+0.7
4,523,711	-		Shew_3801	0.46	+0.4
4,523,711	-		Shew_3801	0.46	-0.3
4,523,711	-		Shew_3801	0.46	-4.4
4,523,711	-		Shew_3801	0.46	-0.6
4,523,711	-		Shew_3801	0.46	+0.5
4,523,711	-		Shew_3801	0.46	+0.2
4,523,711	-		Shew_3801	0.46	+0.2
4,523,711	-		Shew_3801	0.46	-0.1
4,523,711	-		Shew_3801	0.46	-0.1
4,523,711	-		Shew_3801	0.46	-0.1
4,523,711	-		Shew_3801	0.46	-0.5
4,523,711	-		Shew_3801	0.46	-0.6
4,523,711	-		Shew_3801	0.46	-0.8
4,523,711	-		Shew_3801	0.46	+0.8
4,523,711	-		Shew_3801	0.46	+0.2
4,523,711	-		Shew_3801	0.46	-0.4
4,523,711	-		Shew_3801	0.46	+0.6
4,523,711	-		Shew_3801	0.46	-0.7
4,523,718	+		Shew_3801	0.46	+1.2
4,523,726	-		Shew_3801	0.47	-0.6
4,523,726	-		Shew_3801	0.47	-1.0
4,523,726	-		Shew_3801	0.47	+0.7
4,523,726	-		Shew_3801	0.47	-0.2
4,523,788	-		Shew_3801	0.49	+0.2
4,523,799	+		Shew_3801	0.50	+0.2
4,523,799	+		Shew_3801	0.50	+0.0
4,523,799	+		Shew_3801	0.50	+0.9
4,523,799	+		Shew_3801	0.50	-2.8
4,523,799	+		Shew_3801	0.50	+0.5
4,523,799	+		Shew_3801	0.50	+0.5
4,523,799	+		Shew_3801	0.50	+0.7
4,523,804	-		Shew_3801	0.50	-0.5
4,523,804	-		Shew_3801	0.50	-0.6
4,523,806	-		Shew_3801	0.50	+1.1
4,523,806	-		Shew_3801	0.50	-0.2
4,523,807	-		Shew_3801	0.50	-0.6
4,523,807	-		Shew_3801	0.50	+0.2
4,523,807	-		Shew_3801	0.50	+0.2
4,523,807	-		Shew_3801	0.50	-0.7
4,523,807	-		Shew_3801	0.50	+0.0
4,523,807	-		Shew_3801	0.50	+1.2
4,523,807	-		Shew_3801	0.50	+0.1
4,523,807	-		Shew_3801	0.50	+0.7
4,523,814	+		Shew_3801	0.50	-0.2
4,523,814	+		Shew_3801	0.50	-0.2
4,523,814	+		Shew_3801	0.50	+1.0
4,523,814	+		Shew_3801	0.50	+0.0
4,523,814	-		Shew_3801	0.50	-0.2
4,523,814	+		Shew_3801	0.50	+0.4
4,523,814	+		Shew_3801	0.50	+0.2
4,523,822	-		Shew_3801	0.51	+0.3
4,523,822	-		Shew_3801	0.51	+0.3
4,523,822	-		Shew_3801	0.51	+0.5
4,523,822	-		Shew_3801	0.51	+0.1
4,523,935	+		Shew_3801	0.56	+1.0
4,523,935	+		Shew_3801	0.56	+0.6
4,523,948	+		Shew_3801	0.56	+0.4
4,523,948	+		Shew_3801	0.56	+1.2
4,523,956	-		Shew_3801	0.57	+0.1
4,523,959	+		Shew_3801	0.57	+0.0
4,523,959	+		Shew_3801	0.57	+0.5
4,523,967	-		Shew_3801	0.57	+0.4
4,523,974	-		Shew_3801	0.58	+0.3
4,523,986	-		Shew_3801	0.58	+0.1
4,523,987	-		Shew_3801	0.58	-0.0
4,524,047	+		Shew_3801	0.61	+0.3
4,524,047	+		Shew_3801	0.61	-0.2
4,524,047	+		Shew_3801	0.61	+1.0
4,524,059	+		Shew_3801	0.61	-0.1
4,524,064	+		Shew_3801	0.62	+1.1
4,524,066	+		Shew_3801	0.62	+0.6
4,524,071	+		Shew_3801	0.62	+0.5
4,524,071	+		Shew_3801	0.62	+1.7
4,524,071	+		Shew_3801	0.62	+0.7
4,524,071	+		Shew_3801	0.62	+1.9
4,524,071	+		Shew_3801	0.62	+0.1
4,524,079	-		Shew_3801	0.62	-0.9
4,524,079	-		Shew_3801	0.62	+0.5
4,524,093	-		Shew_3801	0.63	-0.3
4,524,107	+		Shew_3801	0.64	+0.0
4,524,111	-		Shew_3801	0.64	-0.2
4,524,111	-		Shew_3801	0.64	+0.3
4,524,111	-		Shew_3801	0.64	+0.4
4,524,115	-		Shew_3801	0.64	-0.0
4,524,115	-		Shew_3801	0.64	+0.9
4,524,115	-		Shew_3801	0.64	-0.2
4,524,117	-		Shew_3801	0.64	-0.1
4,524,151	-		Shew_3801	0.65	+0.5
4,524,151	-		Shew_3801	0.65	+0.6
4,524,152	+		Shew_3801	0.66	+0.7
4,524,160	-		Shew_3801	0.66	-0.1
4,524,176	-		Shew_3801	0.67	+1.0
4,524,176	-		Shew_3801	0.67	-0.1
4,524,257	+		Shew_3801	0.70	-0.1
4,524,265	-		Shew_3801	0.71	-0.1
4,524,265	-		Shew_3801	0.71	-0.3
4,524,265	-		Shew_3801	0.71	+0.6
4,524,277	+		Shew_3801	0.71	-0.7
4,524,277	+		Shew_3801	0.71	+0.3
4,524,284	+		Shew_3801	0.71	-0.9
4,524,285	-		Shew_3801	0.71	-0.1
4,524,292	-		Shew_3801	0.72	-0.2
4,524,310	-		Shew_3801	0.73	-0.7
4,524,323	+		Shew_3801	0.73	+0.3
4,524,349	+		Shew_3801	0.74	-0.7
4,524,376	+		Shew_3801	0.75	+0.3
4,524,384	-		Shew_3801	0.76	+0.0
4,524,384	-		Shew_3801	0.76	-0.9
4,524,444	+		Shew_3801	0.79	-0.2
4,524,563	+		Shew_3801	0.84	-0.0
4,524,563	+		Shew_3801	0.84	+0.1
4,524,567	+		Shew_3801	0.84	+0.6
4,524,571	-		Shew_3801	0.84	+0.5
4,524,571	-		Shew_3801	0.84	-0.7
4,524,640	+		Shew_3801	0.87	+0.2
4,524,691	-		Shew_3801	0.90	-0.5
4,524,701	-				+0.2
4,524,701	-				+0.1
4,524,770	+				-1.5
4,524,867	+				+1.3
4,524,867	+				-0.0
4,524,907	+				-1.2
4,525,067	+				-0.9
4,525,067	+				+1.3
4,525,072	+				+0.1
4,525,158	+				-0.6
4,525,281	-		Shew_3802	0.17	-0.2
4,525,570	+		Shew_3802	0.42	+0.7
4,525,679	-		Shew_3802	0.51	-0.1
4,525,807	+		Shew_3802	0.62	-0.6
4,525,807	+		Shew_3802	0.62	+0.6
4,525,814	+		Shew_3802	0.62	-1.7