Strain Fitness in Shewanella loihica PV-4 around Shew_3692

Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_3691 and coaD are separated by 10 nucleotidescoaD and Shew_3693 are separated by 290 nucleotides Shew_3691: Shew_3691 - hypothetical protein (RefSeq), at 4,395,002 to 4,396,507 _3691 Shew_3692: coaD - phosphopantetheine adenylyltransferase (RefSeq), at 4,396,518 to 4,396,994 coaD Shew_3693: Shew_3693 - ADP-heptose--lipooligosaccharide heptosyltransferase III (RefSeq), at 4,397,285 to 4,398,310 _3693 Position (kb) 4396 4397Strain fitness (log2 ratio) -2 -1 0 1at 4397.244 kb on - strandat 4397.338 kb on + strandat 4397.346 kb on - strandat 4397.544 kb on - strand, within Shew_3693at 4397.639 kb on - strand, within Shew_3693at 4397.689 kb on + strand, within Shew_3693at 4397.789 kb on + strand, within Shew_3693at 4397.917 kb on + strand, within Shew_3693at 4397.917 kb on + strand, within Shew_3693at 4397.970 kb on + strand, within Shew_3693

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM
remove
4,397,244 - -2.0
4,397,338 + -1.2
4,397,346 - -1.6
4,397,544 - Shew_3693 0.25 -1.3
4,397,639 - Shew_3693 0.35 -2.6
4,397,689 + Shew_3693 0.39 -1.7
4,397,789 + Shew_3693 0.49 -0.6
4,397,917 + Shew_3693 0.62 -1.3
4,397,917 + Shew_3693 0.62 -0.4
4,397,970 + Shew_3693 0.67 -1.5

Or see this region's nucleotide sequence