Strain Fitness in Shewanella loihica PV-4 around Shew_2867

Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2866 and Shew_2867 overlap by 4 nucleotidesShew_2867 and Shew_2868 are separated by 524 nucleotides Shew_2866: Shew_2866 - acyl-CoA synthetase (RefSeq), at 3,398,900 to 3,400,609 _2866 Shew_2867: Shew_2867 - pyruvate carboxylase, propionyl-CoA carboxylase (RefSeq), at 3,400,606 to 3,403,890 _2867 Shew_2868: Shew_2868 - acyl-CoA dehydrogenase domain-containing protein (RefSeq), at 3,404,415 to 3,406,223 _2868 Position (kb) 3400 3401 3402 3403 3404Strain fitness (log2 ratio) -1 0 1at 3399.977 kb on - strand, within Shew_2866at 3400.176 kb on + strand, within Shew_2866at 3400.176 kb on + strand, within Shew_2866at 3400.176 kb on + strand, within Shew_2866at 3400.184 kb on - strand, within Shew_2866at 3400.184 kb on - strand, within Shew_2866at 3400.186 kb on + strand, within Shew_2866at 3400.666 kb on + strandat 3400.666 kb on + strandat 3400.674 kb on - strandat 3400.676 kb on + strandat 3400.818 kb on + strandat 3401.035 kb on - strand, within Shew_2867at 3401.143 kb on - strand, within Shew_2867at 3401.171 kb on - strand, within Shew_2867at 3401.290 kb on - strand, within Shew_2867at 3401.305 kb on - strand, within Shew_2867at 3401.645 kb on + strand, within Shew_2867at 3401.720 kb on + strand, within Shew_2867at 3401.763 kb on - strand, within Shew_2867at 3401.825 kb on - strand, within Shew_2867at 3401.911 kb on - strand, within Shew_2867at 3402.886 kb on + strand, within Shew_2867at 3403.382 kb on - strand, within Shew_2867at 3403.513 kb on - strand, within Shew_2867at 3403.546 kb on - strand, within Shew_2867at 3403.674 kb on + strandat 3403.934 kb on + strandat 3403.942 kb on - strandat 3404.079 kb on + strandat 3404.079 kb on + strandat 3404.394 kb on + strandat 3404.394 kb on + strandat 3404.402 kb on - strandat 3404.402 kb on - strandat 3404.402 kb on - strandat 3404.708 kb on + strand, within Shew_2868at 3404.727 kb on - strand, within Shew_2868at 3404.825 kb on + strand, within Shew_2868

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM
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3,399,977 - Shew_2866 0.63 +0.3
3,400,176 + Shew_2866 0.75 -1.1
3,400,176 + Shew_2866 0.75 +0.1
3,400,176 + Shew_2866 0.75 +1.0
3,400,184 - Shew_2866 0.75 -0.2
3,400,184 - Shew_2866 0.75 -0.1
3,400,186 + Shew_2866 0.75 +0.6
3,400,666 + +0.1
3,400,666 + -0.1
3,400,674 - -0.2
3,400,676 + +0.4
3,400,818 + +0.8
3,401,035 - Shew_2867 0.13 +0.2
3,401,143 - Shew_2867 0.16 +0.5
3,401,171 - Shew_2867 0.17 +0.2
3,401,290 - Shew_2867 0.21 +0.0
3,401,305 - Shew_2867 0.21 -0.3
3,401,645 + Shew_2867 0.32 -0.5
3,401,720 + Shew_2867 0.34 -0.2
3,401,763 - Shew_2867 0.35 -0.5
3,401,825 - Shew_2867 0.37 -0.4
3,401,911 - Shew_2867 0.40 -1.0
3,402,886 + Shew_2867 0.69 -0.4
3,403,382 - Shew_2867 0.85 -0.1
3,403,513 - Shew_2867 0.88 -0.7
3,403,546 - Shew_2867 0.89 -0.9
3,403,674 + +0.5
3,403,934 + +0.8
3,403,942 - +0.1
3,404,079 + -0.1
3,404,079 + +0.0
3,404,394 + +0.2
3,404,394 + +0.1
3,404,402 - +0.5
3,404,402 - -0.0
3,404,402 - +0.0
3,404,708 + Shew_2868 0.16 -0.1
3,404,727 - Shew_2868 0.17 -0.7
3,404,825 + Shew_2868 0.23 -0.7

Or see this region's nucleotide sequence