Strain Fitness in Shewanella loihica PV-4 around Shew_2350

Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2349 and Shew_2350 overlap by 4 nucleotidesShew_2350 and Shew_2351 are separated by 120 nucleotides Shew_2349: Shew_2349 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,743,162 to 2,744,511 _2349 Shew_2350: Shew_2350 - 2OG-Fe(II) oxygenase (RefSeq), at 2,744,508 to 2,745,203 _2350 Shew_2351: Shew_2351 - metal dependent phosphohydrolase (RefSeq), at 2,745,324 to 2,746,589 _2351 Position (kb) 2744 2745 2746Strain fitness (log2 ratio) -2 -1 0 1at 2743.866 kb on - strand, within Shew_2349at 2744.124 kb on + strand, within Shew_2349at 2745.041 kb on + strand, within Shew_2350at 2745.132 kb on - strand, within Shew_2350at 2745.407 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM
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2,743,866 - Shew_2349 0.52 +0.0
2,744,124 + Shew_2349 0.71 -0.6
2,745,041 + Shew_2350 0.77 -1.8
2,745,132 - Shew_2350 0.90 -2.3
2,745,407 - -1.4

Or see this region's nucleotide sequence