Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1701 and Shew_1702 are separated by 511 nucleotides Shew_1702 and Shew_1703 are separated by 42 nucleotides Shew_1703 and Shew_1704 are separated by 343 nucleotides
Shew_1701: Shew_1701 - transcriptional regulator PhoU (RefSeq), at 1,956,389 to 1,957,090
_1701
Shew_1702: Shew_1702 - TPR repeat-containing protein (RefSeq), at 1,957,602 to 1,957,907
_1702
Shew_1703: Shew_1703 - hypothetical protein (RefSeq), at 1,957,950 to 1,958,477
_1703
Shew_1704: Shew_1704 - hypothetical protein (RefSeq), at 1,958,821 to 1,959,285
_1704
Position (kb)
1957
1958 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1957.054 kb on + strand at 1957.055 kb on + strand at 1957.084 kb on + strand at 1957.084 kb on + strand at 1957.084 kb on + strand at 1957.091 kb on + strand at 1957.092 kb on - strand at 1957.092 kb on - strand at 1957.092 kb on - strand at 1957.092 kb on - strand at 1957.092 kb on - strand at 1957.099 kb on - strand at 1957.099 kb on - strand at 1957.099 kb on - strand at 1957.104 kb on - strand at 1957.104 kb on - strand at 1957.106 kb on - strand at 1957.123 kb on + strand at 1957.131 kb on - strand at 1957.142 kb on - strand at 1957.142 kb on - strand at 1957.146 kb on + strand at 1957.154 kb on - strand at 1957.173 kb on - strand at 1957.202 kb on + strand at 1957.202 kb on + strand at 1957.237 kb on + strand at 1957.314 kb on - strand at 1957.491 kb on + strand at 1957.505 kb on - strand at 1957.518 kb on + strand at 1957.534 kb on - strand at 1957.539 kb on + strand at 1957.540 kb on + strand at 1957.547 kb on - strand at 1957.548 kb on - strand at 1957.596 kb on - strand at 1957.618 kb on - strand at 1957.618 kb on - strand at 1957.618 kb on - strand at 1957.621 kb on + strand at 1957.627 kb on - strand at 1957.629 kb on - strand at 1957.629 kb on - strand at 1957.656 kb on + strand, within Shew_1702 at 1957.678 kb on + strand, within Shew_1702 at 1957.681 kb on - strand, within Shew_1702 at 1957.712 kb on + strand, within Shew_1702 at 1957.730 kb on + strand, within Shew_1702 at 1957.732 kb on + strand, within Shew_1702 at 1957.740 kb on - strand, within Shew_1702 at 1957.745 kb on + strand, within Shew_1702 at 1957.747 kb on + strand, within Shew_1702 at 1957.753 kb on - strand, within Shew_1702 at 1957.753 kb on - strand, within Shew_1702 at 1957.763 kb on - strand, within Shew_1702 at 1957.835 kb on + strand, within Shew_1702 at 1957.835 kb on + strand, within Shew_1702 at 1957.843 kb on + strand, within Shew_1702 at 1957.844 kb on - strand, within Shew_1702 at 1957.872 kb on - strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.873 kb on + strand, within Shew_1702 at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.881 kb on - strand at 1957.883 kb on + strand at 1957.891 kb on - strand at 1957.891 kb on - strand at 1957.891 kb on - strand at 1957.893 kb on + strand at 1957.896 kb on + strand at 1957.896 kb on + strand at 1957.896 kb on + strand at 1957.896 kb on + strand at 1957.896 kb on + strand at 1957.901 kb on + strand at 1957.901 kb on + strand at 1957.901 kb on + strand at 1957.901 kb on + strand at 1957.901 kb on - strand at 1957.901 kb on + strand at 1957.901 kb on - strand at 1957.901 kb on + strand at 1957.901 kb on + strand at 1957.901 kb on + strand at 1957.901 kb on + strand at 1957.904 kb on - strand at 1957.904 kb on - strand at 1957.904 kb on - strand at 1957.904 kb on - strand at 1957.909 kb on - strand at 1957.909 kb on - strand at 1957.909 kb on - strand at 1957.909 kb on - strand at 1957.909 kb on - strand at 1957.909 kb on - strand at 1957.909 kb on - strand at 1957.909 kb on - strand at 1957.946 kb on + strand at 1957.994 kb on + strand at 1958.002 kb on - strand at 1958.005 kb on + strand, within Shew_1703 at 1958.010 kb on + strand, within Shew_1703 at 1958.011 kb on + strand, within Shew_1703 at 1958.018 kb on + strand, within Shew_1703 at 1958.018 kb on + strand, within Shew_1703 at 1958.018 kb on + strand, within Shew_1703 at 1958.019 kb on - strand, within Shew_1703 at 1958.019 kb on - strand, within Shew_1703 at 1958.019 kb on - strand, within Shew_1703 at 1958.019 kb on - strand, within Shew_1703 at 1958.023 kb on + strand, within Shew_1703 at 1958.024 kb on - strand, within Shew_1703 at 1958.024 kb on - strand, within Shew_1703 at 1958.024 kb on + strand, within Shew_1703 at 1958.024 kb on - strand, within Shew_1703 at 1958.024 kb on + strand, within Shew_1703 at 1958.029 kb on + strand, within Shew_1703 at 1958.034 kb on - strand, within Shew_1703 at 1958.037 kb on - strand, within Shew_1703 at 1958.039 kb on + strand, within Shew_1703 at 1958.039 kb on + strand, within Shew_1703 at 1958.039 kb on + strand, within Shew_1703 at 1958.047 kb on - strand, within Shew_1703 at 1958.047 kb on - strand, within Shew_1703 at 1958.047 kb on - strand, within Shew_1703 at 1958.070 kb on + strand, within Shew_1703 at 1958.070 kb on + strand, within Shew_1703 at 1958.070 kb on + strand, within Shew_1703 at 1958.078 kb on - strand, within Shew_1703 at 1958.078 kb on - strand, within Shew_1703 at 1958.078 kb on - strand, within Shew_1703 at 1958.078 kb on - strand, within Shew_1703 at 1958.078 kb on - strand, within Shew_1703 at 1958.078 kb on - strand, within Shew_1703 at 1958.078 kb on - strand, within Shew_1703 at 1958.078 kb on - strand, within Shew_1703 at 1958.078 kb on - strand, within Shew_1703 at 1958.078 kb on - strand, within Shew_1703 at 1958.078 kb on - strand, within Shew_1703 at 1958.078 kb on - strand, within Shew_1703 at 1958.086 kb on + strand, within Shew_1703 at 1958.094 kb on - strand, within Shew_1703 at 1958.190 kb on + strand, within Shew_1703 at 1958.190 kb on + strand, within Shew_1703 at 1958.198 kb on - strand, within Shew_1703 at 1958.235 kb on + strand, within Shew_1703 at 1958.236 kb on + strand, within Shew_1703 at 1958.237 kb on + strand, within Shew_1703 at 1958.237 kb on + strand, within Shew_1703 at 1958.246 kb on - strand, within Shew_1703 at 1958.253 kb on + strand, within Shew_1703 at 1958.257 kb on + strand, within Shew_1703 at 1958.265 kb on - strand, within Shew_1703 at 1958.271 kb on - strand, within Shew_1703 at 1958.299 kb on + strand, within Shew_1703 at 1958.299 kb on + strand, within Shew_1703 at 1958.305 kb on + strand, within Shew_1703 at 1958.305 kb on + strand, within Shew_1703 at 1958.307 kb on - strand, within Shew_1703 at 1958.313 kb on - strand, within Shew_1703 at 1958.313 kb on - strand, within Shew_1703 at 1958.313 kb on - strand, within Shew_1703 at 1958.313 kb on - strand, within Shew_1703 at 1958.351 kb on + strand, within Shew_1703 at 1958.351 kb on + strand, within Shew_1703 at 1958.359 kb on - strand, within Shew_1703 at 1958.385 kb on - strand, within Shew_1703 at 1958.385 kb on - strand, within Shew_1703 at 1958.389 kb on + strand, within Shew_1703 at 1958.397 kb on - strand, within Shew_1703 at 1958.458 kb on - strand at 1958.497 kb on + strand at 1958.497 kb on + strand at 1958.497 kb on + strand at 1958.497 kb on + strand at 1958.546 kb on + strand at 1958.546 kb on + strand at 1958.546 kb on + strand at 1958.546 kb on + strand at 1958.554 kb on - strand at 1958.554 kb on - strand at 1958.554 kb on - strand at 1958.581 kb on - strand at 1958.581 kb on - strand at 1958.622 kb on + strand at 1958.622 kb on + strand at 1958.622 kb on + strand at 1958.622 kb on + strand at 1958.622 kb on + strand at 1958.624 kb on + strand at 1958.637 kb on - strand at 1958.649 kb on - strand at 1958.824 kb on + strand at 1958.824 kb on + strand at 1958.858 kb on + strand at 1958.901 kb on + strand, within Shew_1704 at 1958.901 kb on + strand, within Shew_1704 at 1958.906 kb on + strand, within Shew_1704 at 1958.906 kb on + strand, within Shew_1704
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 1,957,054 + -0.3 1,957,055 + +0.9 1,957,084 + -0.2 1,957,084 + +0.0 1,957,084 + +0.1 1,957,091 + -0.2 1,957,092 - -0.1 1,957,092 - +0.6 1,957,092 - +0.1 1,957,092 - +0.2 1,957,092 - -0.4 1,957,099 - -0.1 1,957,099 - -0.5 1,957,099 - +0.2 1,957,104 - -4.5 1,957,104 - -0.0 1,957,106 - -0.0 1,957,123 + +0.4 1,957,131 - -0.5 1,957,142 - +0.8 1,957,142 - +1.2 1,957,146 + +1.4 1,957,154 - -1.4 1,957,173 - -0.1 1,957,202 + +0.9 1,957,202 + -1.0 1,957,237 + -3.6 1,957,314 - -0.3 1,957,491 + +0.5 1,957,505 - -0.6 1,957,518 + -0.1 1,957,534 - +0.1 1,957,539 + +0.4 1,957,540 + -0.4 1,957,547 - -0.0 1,957,548 - +0.1 1,957,596 - -0.2 1,957,618 - -1.0 1,957,618 - +0.4 1,957,618 - +0.2 1,957,621 + +0.1 1,957,627 - +0.3 1,957,629 - +0.1 1,957,629 - +0.2 1,957,656 + Shew_1702 0.18 +1.2 1,957,678 + Shew_1702 0.25 -0.2 1,957,681 - Shew_1702 0.26 +1.6 1,957,712 + Shew_1702 0.36 +1.0 1,957,730 + Shew_1702 0.42 +0.3 1,957,732 + Shew_1702 0.42 -0.2 1,957,740 - Shew_1702 0.45 -3.9 1,957,745 + Shew_1702 0.47 -0.3 1,957,747 + Shew_1702 0.47 +1.6 1,957,753 - Shew_1702 0.49 -0.2 1,957,753 - Shew_1702 0.49 -1.5 1,957,763 - Shew_1702 0.53 -3.0 1,957,835 + Shew_1702 0.76 +1.5 1,957,835 + Shew_1702 0.76 -1.0 1,957,843 + Shew_1702 0.79 +1.0 1,957,844 - Shew_1702 0.79 +1.6 1,957,872 - Shew_1702 0.88 +0.1 1,957,873 + Shew_1702 0.89 +0.5 1,957,873 + Shew_1702 0.89 +0.3 1,957,873 + Shew_1702 0.89 -0.1 1,957,873 + Shew_1702 0.89 -0.1 1,957,873 + Shew_1702 0.89 +0.2 1,957,873 + Shew_1702 0.89 -0.5 1,957,873 + Shew_1702 0.89 +0.1 1,957,873 + Shew_1702 0.89 -0.4 1,957,873 + Shew_1702 0.89 +0.3 1,957,873 + Shew_1702 0.89 +0.4 1,957,873 + Shew_1702 0.89 -0.2 1,957,873 + Shew_1702 0.89 +0.0 1,957,873 + Shew_1702 0.89 +0.9 1,957,873 + Shew_1702 0.89 -1.1 1,957,873 + Shew_1702 0.89 +0.2 1,957,881 - -1.9 1,957,881 - +0.6 1,957,881 - +1.4 1,957,881 - -0.7 1,957,881 - +0.5 1,957,881 - -0.4 1,957,881 - -0.0 1,957,881 - -0.2 1,957,881 - +0.4 1,957,881 - -0.2 1,957,881 - +1.1 1,957,881 - +0.5 1,957,881 - +1.8 1,957,881 - +0.8 1,957,881 - +0.1 1,957,881 - +0.7 1,957,881 - +1.6 1,957,881 - +0.1 1,957,881 - -0.2 1,957,881 - +1.0 1,957,883 + -0.3 1,957,891 - +0.6 1,957,891 - +0.6 1,957,891 - -1.0 1,957,893 + -0.5 1,957,896 + -0.5 1,957,896 + +0.7 1,957,896 + +0.4 1,957,896 + -0.1 1,957,896 + +0.4 1,957,901 + -0.0 1,957,901 + +0.1 1,957,901 + +0.5 1,957,901 + -3.4 1,957,901 - +0.7 1,957,901 + +0.5 1,957,901 - +0.5 1,957,901 + +1.1 1,957,901 + +0.7 1,957,901 + +0.3 1,957,901 + +0.3 1,957,904 - +1.7 1,957,904 - +1.2 1,957,904 - +0.7 1,957,904 - -3.3 1,957,909 - -0.1 1,957,909 - +0.0 1,957,909 - -0.4 1,957,909 - +0.0 1,957,909 - -0.1 1,957,909 - +0.2 1,957,909 - -0.5 1,957,909 - +0.5 1,957,946 + +0.5 1,957,994 + -2.5 1,958,002 - -0.7 1,958,005 + Shew_1703 0.10 -0.8 1,958,010 + Shew_1703 0.11 +0.2 1,958,011 + Shew_1703 0.12 -0.6 1,958,018 + Shew_1703 0.13 -0.1 1,958,018 + Shew_1703 0.13 -2.7 1,958,018 + Shew_1703 0.13 +0.1 1,958,019 - Shew_1703 0.13 +0.8 1,958,019 - Shew_1703 0.13 +0.8 1,958,019 - Shew_1703 0.13 +0.3 1,958,019 - Shew_1703 0.13 -1.1 1,958,023 + Shew_1703 0.14 +0.3 1,958,024 - Shew_1703 0.14 +0.8 1,958,024 - Shew_1703 0.14 +0.4 1,958,024 + Shew_1703 0.14 -0.7 1,958,024 - Shew_1703 0.14 -2.3 1,958,024 + Shew_1703 0.14 +1.1 1,958,029 + Shew_1703 0.15 +0.6 1,958,034 - Shew_1703 0.16 +0.1 1,958,037 - Shew_1703 0.16 +0.4 1,958,039 + Shew_1703 0.17 +0.6 1,958,039 + Shew_1703 0.17 -0.0 1,958,039 + Shew_1703 0.17 +0.3 1,958,047 - Shew_1703 0.18 +1.4 1,958,047 - Shew_1703 0.18 -0.2 1,958,047 - Shew_1703 0.18 -0.4 1,958,070 + Shew_1703 0.23 +0.2 1,958,070 + Shew_1703 0.23 -2.8 1,958,070 + Shew_1703 0.23 +0.2 1,958,078 - Shew_1703 0.24 -0.6 1,958,078 - Shew_1703 0.24 +0.6 1,958,078 - Shew_1703 0.24 -0.3 1,958,078 - Shew_1703 0.24 -0.9 1,958,078 - Shew_1703 0.24 -3.7 1,958,078 - Shew_1703 0.24 -3.3 1,958,078 - Shew_1703 0.24 +0.6 1,958,078 - Shew_1703 0.24 -0.2 1,958,078 - Shew_1703 0.24 -0.2 1,958,078 - Shew_1703 0.24 +0.3 1,958,078 - Shew_1703 0.24 +0.5 1,958,078 - Shew_1703 0.24 +0.9 1,958,086 + Shew_1703 0.26 +1.0 1,958,094 - Shew_1703 0.27 -0.9 1,958,190 + Shew_1703 0.45 +0.3 1,958,190 + Shew_1703 0.45 -0.1 1,958,198 - Shew_1703 0.47 -0.9 1,958,235 + Shew_1703 0.54 +0.3 1,958,236 + Shew_1703 0.54 -3.0 1,958,237 + Shew_1703 0.54 +1.0 1,958,237 + Shew_1703 0.54 -2.3 1,958,246 - Shew_1703 0.56 -0.0 1,958,253 + Shew_1703 0.57 -0.4 1,958,257 + Shew_1703 0.58 -0.0 1,958,265 - Shew_1703 0.60 +0.7 1,958,271 - Shew_1703 0.61 +1.3 1,958,299 + Shew_1703 0.66 -0.2 1,958,299 + Shew_1703 0.66 +0.0 1,958,305 + Shew_1703 0.67 +0.8 1,958,305 + Shew_1703 0.67 -0.1 1,958,307 - Shew_1703 0.68 -0.1 1,958,313 - Shew_1703 0.69 +0.6 1,958,313 - Shew_1703 0.69 +1.5 1,958,313 - Shew_1703 0.69 +0.9 1,958,313 - Shew_1703 0.69 -0.5 1,958,351 + Shew_1703 0.76 -1.5 1,958,351 + Shew_1703 0.76 -2.4 1,958,359 - Shew_1703 0.77 -0.5 1,958,385 - Shew_1703 0.82 +1.2 1,958,385 - Shew_1703 0.82 -0.4 1,958,389 + Shew_1703 0.83 +0.2 1,958,397 - Shew_1703 0.85 +0.3 1,958,458 - +0.3 1,958,497 + -0.3 1,958,497 + +0.2 1,958,497 + -4.6 1,958,497 + -0.6 1,958,546 + +0.3 1,958,546 + +0.3 1,958,546 + -2.2 1,958,546 + -1.2 1,958,554 - +0.0 1,958,554 - -1.8 1,958,554 - +0.0 1,958,581 - -1.1 1,958,581 - +0.2 1,958,622 + +0.7 1,958,622 + +0.3 1,958,622 + +0.0 1,958,622 + +0.1 1,958,622 + -0.2 1,958,624 + -0.1 1,958,637 - +0.4 1,958,649 - -0.2 1,958,824 + +0.8 1,958,824 + +1.0 1,958,858 + -0.2 1,958,901 + Shew_1704 0.17 -1.1 1,958,901 + Shew_1704 0.17 +0.0 1,958,906 + Shew_1704 0.18 +0.8 1,958,906 + Shew_1704 0.18 +0.0
Or see this region's nucleotide sequence