Strain Fitness in Shewanella loihica PV-4 around Shew_1030

Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium lysine 10 mM
1,186,814	-		Shew_1028	0.10	-1.2
1,186,814	-		Shew_1028	0.10	-2.7
1,186,814	-		Shew_1028	0.10	-2.6
1,186,814	-		Shew_1028	0.10	-3.1
1,186,848	+		Shew_1028	0.16	-1.2
1,186,856	-		Shew_1028	0.17	-2.5
1,186,856	-		Shew_1028	0.17	-1.6
1,186,856	-		Shew_1028	0.17	-2.4
1,186,864	-		Shew_1028	0.18	-2.3
1,186,930	+		Shew_1028	0.29	+1.3
1,186,937	-		Shew_1028	0.31	-0.7
1,186,937	-		Shew_1028	0.31	-3.4
1,186,947	-		Shew_1028	0.32	-2.0
1,186,948	-		Shew_1028	0.32	-0.6
1,186,949	-		Shew_1028	0.33	-1.6
1,186,951	+		Shew_1028	0.33	-2.3
1,186,951	+		Shew_1028	0.33	+0.4
1,186,951	+		Shew_1028	0.33	+0.2
1,186,951	+		Shew_1028	0.33	-2.3
1,186,951	+		Shew_1028	0.33	-1.4
1,186,951	+		Shew_1028	0.33	-2.5
1,186,951	+		Shew_1028	0.33	-2.2
1,186,951	+		Shew_1028	0.33	+2.0
1,186,951	+		Shew_1028	0.33	-4.4
1,186,951	+		Shew_1028	0.33	-4.5
1,186,951	+		Shew_1028	0.33	+0.5
1,186,959	-		Shew_1028	0.34	-2.9
1,186,959	-		Shew_1028	0.34	-2.7
1,186,959	-		Shew_1028	0.34	-3.7
1,186,959	-		Shew_1028	0.34	-1.6
1,186,959	-		Shew_1028	0.34	-1.4
1,186,959	-		Shew_1028	0.34	-1.4
1,186,959	-		Shew_1028	0.34	-2.6
1,186,959	-		Shew_1028	0.34	-4.1
1,186,959	-		Shew_1028	0.34	-2.0
1,186,959	-		Shew_1028	0.34	-1.0
1,186,959	-		Shew_1028	0.34	-1.8
1,186,959	-		Shew_1028	0.34	-2.9
1,186,959	-		Shew_1028	0.34	-1.8
1,186,959	-		Shew_1028	0.34	-1.9
1,186,959	-		Shew_1028	0.34	-1.6
1,186,959	-		Shew_1028	0.34	-1.8
1,186,959	-		Shew_1028	0.34	-1.8
1,187,113	+		Shew_1028	0.60	-1.6
1,187,165	-		Shew_1028	0.68	-3.0
1,187,261	-		Shew_1028	0.84	-1.6
1,187,261	-		Shew_1028	0.84	-2.3
1,187,440	-		Shew_1029	0.18	+0.2
1,187,442	-		Shew_1029	0.19	+0.8
1,187,442	-		Shew_1029	0.19	+0.5
1,187,456	-		Shew_1029	0.22	+0.1
1,187,466	-		Shew_1029	0.24	+0.3
1,187,466	-		Shew_1029	0.24	+0.2
1,187,466	-		Shew_1029	0.24	-0.2
1,187,479	-		Shew_1029	0.27	+0.0
1,187,487	-		Shew_1029	0.29	-0.9
1,187,487	-		Shew_1029	0.29	+0.1
1,187,553	-		Shew_1029	0.43	-0.3
1,187,553	-		Shew_1029	0.43	+0.5
1,187,555	-		Shew_1029	0.44	-0.2
1,187,555	-		Shew_1029	0.44	+0.7
1,187,555	-		Shew_1029	0.44	-0.7
1,187,555	-		Shew_1029	0.44	-0.4
1,187,560	-		Shew_1029	0.45	-1.5
1,187,562	-		Shew_1029	0.45	+0.2
1,187,562	+		Shew_1029	0.45	+1.2
1,187,610	-		Shew_1029	0.56	+0.3
1,187,610	-		Shew_1029	0.56	+0.7
1,187,610	-		Shew_1029	0.56	-0.7
1,187,610	-		Shew_1029	0.56	-0.0
1,187,610	-		Shew_1029	0.56	+0.5
1,187,610	-		Shew_1029	0.56	-3.8
1,187,615	+		Shew_1029	0.57	-1.6
1,187,619	-		Shew_1029	0.58	+1.0
1,187,628	-		Shew_1029	0.60	+0.2
1,187,633	-		Shew_1029	0.61	-1.4
1,187,638	-		Shew_1029	0.62	+0.4
1,187,684	-		Shew_1029	0.72	+0.5
1,187,704	-		Shew_1029	0.77	+0.4
1,187,726	-		Shew_1029	0.81	-0.1
1,187,812	+				+0.7
1,187,820	-				+1.7
1,187,858	+				-0.3
1,187,859	-				-0.2
1,187,859	-				+0.1
1,187,859	-				+0.1
1,187,866	-				-0.2
1,187,866	-				+0.2
1,187,880	+		Shew_1030	0.11	+0.4
1,187,890	+		Shew_1030	0.13	+0.9
1,187,890	+		Shew_1030	0.13	+0.3
1,187,890	+		Shew_1030	0.13	+0.2
1,187,890	+		Shew_1030	0.13	-0.7
1,187,890	+		Shew_1030	0.13	+0.4
1,187,890	+		Shew_1030	0.13	-4.3
1,187,890	+		Shew_1030	0.13	-0.5
1,187,890	+		Shew_1030	0.13	+0.1
1,187,890	+		Shew_1030	0.13	+1.0
1,187,890	+		Shew_1030	0.13	+2.1
1,187,890	+		Shew_1030	0.13	+0.7
1,187,890	+		Shew_1030	0.13	+0.6
1,187,890	+		Shew_1030	0.13	-0.7
1,187,890	+		Shew_1030	0.13	-0.6
1,187,890	+		Shew_1030	0.13	+0.4
1,187,890	+		Shew_1030	0.13	+0.2
1,187,890	+		Shew_1030	0.13	+0.2
1,187,890	+		Shew_1030	0.13	+0.8
1,187,891	+		Shew_1030	0.13	+0.7
1,187,898	-		Shew_1030	0.14	+1.1
1,187,898	-		Shew_1030	0.14	+1.1
1,187,898	-		Shew_1030	0.14	-0.7
1,187,898	-		Shew_1030	0.14	+0.0
1,187,898	-		Shew_1030	0.14	-0.0
1,187,899	-		Shew_1030	0.14	-0.3
1,187,899	-		Shew_1030	0.14	-0.4
1,187,899	-		Shew_1030	0.14	+1.7
1,187,899	-		Shew_1030	0.14	-0.9
1,187,899	-		Shew_1030	0.14	+0.2
1,187,899	-		Shew_1030	0.14	-3.8
1,187,901	+		Shew_1030	0.14	-0.4
1,187,901	+		Shew_1030	0.14	-0.0
1,187,901	+		Shew_1030	0.14	+0.1
1,187,901	+		Shew_1030	0.14	+0.4
1,187,901	+		Shew_1030	0.14	-0.2
1,187,901	+		Shew_1030	0.14	-0.0
1,187,901	+		Shew_1030	0.14	-0.2
1,187,901	+		Shew_1030	0.14	-1.8
1,187,901	+		Shew_1030	0.14	-2.1
1,187,901	+		Shew_1030	0.14	-0.2
1,187,901	+		Shew_1030	0.14	+0.1
1,187,901	+		Shew_1030	0.14	+1.5
1,187,909	-		Shew_1030	0.15	-0.6
1,187,909	-		Shew_1030	0.15	+0.2
1,187,909	-		Shew_1030	0.15	+0.9
1,187,909	-		Shew_1030	0.15	-1.0
1,187,909	-		Shew_1030	0.15	-0.0
1,187,909	-		Shew_1030	0.15	-0.3
1,187,909	-		Shew_1030	0.15	+0.5
1,187,909	-		Shew_1030	0.15	-0.1
1,187,909	-		Shew_1030	0.15	-0.4
1,187,909	-		Shew_1030	0.15	-0.6
1,187,909	-		Shew_1030	0.15	+0.4
1,187,909	-		Shew_1030	0.15	+0.5
1,187,909	-		Shew_1030	0.15	-0.1
1,187,909	-		Shew_1030	0.15	+0.5
1,187,923	+		Shew_1030	0.17	+0.0
1,187,923	+		Shew_1030	0.17	+0.6
1,187,926	+		Shew_1030	0.18	-2.7
1,187,931	-		Shew_1030	0.18	+1.5
1,187,934	-		Shew_1030	0.19	+0.1
1,187,948	-		Shew_1030	0.21	+0.1
1,187,965	-		Shew_1030	0.23	+0.9
1,187,973	+		Shew_1030	0.24	+0.4
1,187,973	+		Shew_1030	0.24	+0.5
1,187,973	+		Shew_1030	0.24	+0.0
1,187,973	+		Shew_1030	0.24	-2.1
1,187,981	-		Shew_1030	0.25	+0.7
1,187,981	-		Shew_1030	0.25	-0.2
1,187,981	-		Shew_1030	0.25	-0.0
1,187,981	-		Shew_1030	0.25	-0.2
1,187,981	-		Shew_1030	0.25	+0.1
1,187,981	-		Shew_1030	0.25	-1.3
1,187,991	-		Shew_1030	0.27	-0.3
1,187,992	-		Shew_1030	0.27	-0.3
1,187,996	+		Shew_1030	0.28	+0.1
1,188,003	+		Shew_1030	0.29	-0.2
1,188,011	-		Shew_1030	0.30	-1.3
1,188,011	-		Shew_1030	0.30	+0.1
1,188,011	-		Shew_1030	0.30	-0.1
1,188,011	-		Shew_1030	0.30	+0.2
1,188,013	+		Shew_1030	0.30	+0.0
1,188,028	+		Shew_1030	0.32	-0.6
1,188,030	+		Shew_1030	0.32	-0.1
1,188,040	-		Shew_1030	0.34	+0.3
1,188,061	+		Shew_1030	0.37	-4.2
1,188,069	-		Shew_1030	0.38	-0.0
1,188,076	+		Shew_1030	0.39	-0.2
1,188,077	+		Shew_1030	0.39	-0.5
1,188,084	-		Shew_1030	0.40	+0.8
1,188,092	+		Shew_1030	0.41	-0.2
1,188,097	+		Shew_1030	0.42	-2.9
1,188,127	-		Shew_1030	0.46	-0.4
1,188,139	-		Shew_1030	0.48	+0.2
1,188,141	+		Shew_1030	0.48	+0.3
1,188,141	+		Shew_1030	0.48	+0.1
1,188,191	+		Shew_1030	0.55	+0.5
1,188,199	-		Shew_1030	0.57	-2.5
1,188,199	-		Shew_1030	0.57	-1.5
1,188,209	-		Shew_1030	0.58	-0.5
1,188,219	-		Shew_1030	0.59	-0.0
1,188,253	+		Shew_1030	0.64	+0.6
1,188,255	+		Shew_1030	0.65	-0.2
1,188,256	+		Shew_1030	0.65	+0.6
1,188,261	-		Shew_1030	0.65	-0.4
1,188,261	-		Shew_1030	0.65	+0.1
1,188,261	-		Shew_1030	0.65	-0.2
1,188,273	+		Shew_1030	0.67	+0.0
1,188,301	+		Shew_1030	0.71	+0.2
1,188,326	-		Shew_1030	0.75	+0.2
1,188,371	+		Shew_1030	0.81	+0.3
1,188,381	-		Shew_1030	0.82	+0.1
1,188,400	+		Shew_1030	0.85	-1.3
1,188,407	+		Shew_1030	0.86	+0.6
1,188,408	-		Shew_1030	0.86	+0.4
1,188,415	-		Shew_1030	0.87	+0.1
1,188,440	+				+0.4
1,188,445	+				+0.4
1,188,448	-				-0.6
1,188,453	-				-0.3
1,188,453	-				-0.1
1,188,504	-				-0.5
1,188,509	+				+1.0
1,188,509	-				-0.6
1,188,516	+				-0.1
1,188,517	-				+0.8
1,188,542	-				+0.6
1,188,773	-				-0.3
1,188,773	-				-3.2
1,188,985	+				+1.1
1,189,054	-				-1.3
1,189,467	+				-0.7
1,189,485	-				+0.0