Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0803 and Shew_0804 overlap by 4 nucleotides Shew_0804 and Shew_0805 overlap by 4 nucleotides Shew_0805 and Shew_0806 overlap by 11 nucleotides
Shew_0803: Shew_0803 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 916,063 to 917,301
_0803
Shew_0804: Shew_0804 - two component transcriptional regulator (RefSeq), at 917,298 to 918,002
_0804
Shew_0805: Shew_0805 - hypothetical protein (RefSeq), at 917,999 to 918,394
_0805
Shew_0806: Shew_0806 - MltA-interacting MipA family protein (RefSeq), at 918,384 to 919,229
_0806
Position (kb) 917
918
919 Strain fitness (log2 ratio) -2
-1
0
1 at 916.373 kb on + strand, within Shew_0803 at 916.401 kb on + strand, within Shew_0803 at 916.742 kb on + strand, within Shew_0803 at 916.896 kb on - strand, within Shew_0803 at 916.896 kb on - strand, within Shew_0803 at 916.948 kb on + strand, within Shew_0803 at 917.049 kb on + strand, within Shew_0803 at 917.057 kb on - strand, within Shew_0803 at 917.149 kb on - strand, within Shew_0803 at 917.195 kb on + strand at 917.463 kb on - strand, within Shew_0804 at 917.678 kb on + strand, within Shew_0804 at 917.720 kb on + strand, within Shew_0804 at 917.728 kb on - strand, within Shew_0804 at 917.810 kb on + strand, within Shew_0804 at 917.930 kb on + strand, within Shew_0804 at 918.201 kb on - strand, within Shew_0805 at 918.308 kb on - strand, within Shew_0805 at 918.367 kb on + strand at 918.835 kb on - strand, within Shew_0806 at 918.985 kb on + strand, within Shew_0806
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 916,373 + Shew_0803 0.25 +0.3 916,401 + Shew_0803 0.27 +0.0 916,742 + Shew_0803 0.55 -0.2 916,896 - Shew_0803 0.67 +0.9 916,896 - Shew_0803 0.67 -0.3 916,948 + Shew_0803 0.71 +0.5 917,049 + Shew_0803 0.80 +0.5 917,057 - Shew_0803 0.80 -0.6 917,149 - Shew_0803 0.88 +1.5 917,195 + -0.9 917,463 - Shew_0804 0.23 -1.4 917,678 + Shew_0804 0.54 -1.4 917,720 + Shew_0804 0.60 -0.5 917,728 - Shew_0804 0.61 -1.2 917,810 + Shew_0804 0.73 -0.1 917,930 + Shew_0804 0.90 -2.1 918,201 - Shew_0805 0.51 -0.7 918,308 - Shew_0805 0.78 +0.5 918,367 + -0.4 918,835 - Shew_0806 0.53 -0.5 918,985 + Shew_0806 0.71 -0.8
Or see this region's nucleotide sequence