Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0765 and Shew_0766 overlap by 1 nucleotides Shew_0766 and Shew_0767 are separated by 229 nucleotides
Shew_0765: Shew_0765 - acriflavin resistance protein (RefSeq), at 870,547 to 873,696
_0765
Shew_0766: Shew_0766 - RND family efflux transporter MFP subunit (RefSeq), at 873,696 to 874,919
_0766
Shew_0767: Shew_0767 - ATP-dependent RNA helicase SrmB (RefSeq), at 875,149 to 876,408
_0767
Position (kb) 873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 872.786 kb on + strand, within Shew_0765 at 872.801 kb on + strand, within Shew_0765 at 872.804 kb on - strand, within Shew_0765 at 872.984 kb on + strand, within Shew_0765 at 873.102 kb on - strand, within Shew_0765 at 873.107 kb on - strand, within Shew_0765 at 873.351 kb on + strand, within Shew_0765 at 873.558 kb on - strand at 873.583 kb on + strand at 873.593 kb on + strand at 873.601 kb on - strand at 873.601 kb on - strand at 873.675 kb on + strand at 873.757 kb on + strand at 873.765 kb on - strand at 873.856 kb on + strand, within Shew_0766 at 873.864 kb on - strand, within Shew_0766 at 873.864 kb on - strand, within Shew_0766 at 873.985 kb on + strand, within Shew_0766 at 874.040 kb on + strand, within Shew_0766 at 874.070 kb on + strand, within Shew_0766 at 874.130 kb on + strand, within Shew_0766 at 874.210 kb on + strand, within Shew_0766 at 874.226 kb on + strand, within Shew_0766 at 874.269 kb on + strand, within Shew_0766 at 874.296 kb on - strand, within Shew_0766 at 874.400 kb on - strand, within Shew_0766 at 875.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 872,786 + Shew_0765 0.71 -0.5 872,801 + Shew_0765 0.72 -0.5 872,804 - Shew_0765 0.72 -0.4 872,984 + Shew_0765 0.77 -0.2 873,102 - Shew_0765 0.81 -0.1 873,107 - Shew_0765 0.81 +0.9 873,351 + Shew_0765 0.89 -0.8 873,558 - -0.6 873,583 + -3.2 873,593 + -0.0 873,601 - +0.1 873,601 - -0.6 873,675 + -0.6 873,757 + -0.3 873,765 - -0.9 873,856 + Shew_0766 0.13 -0.1 873,864 - Shew_0766 0.14 -0.8 873,864 - Shew_0766 0.14 +0.4 873,985 + Shew_0766 0.24 -0.1 874,040 + Shew_0766 0.28 -2.3 874,070 + Shew_0766 0.31 -0.0 874,130 + Shew_0766 0.35 -2.5 874,210 + Shew_0766 0.42 +1.6 874,226 + Shew_0766 0.43 -0.5 874,269 + Shew_0766 0.47 -0.3 874,296 - Shew_0766 0.49 +0.0 874,400 - Shew_0766 0.58 -0.1 875,200 - -0.0
Or see this region's nucleotide sequence