Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0667 and Shew_0668 are separated by 481 nucleotides Shew_0668 and Shew_0669 are separated by 101 nucleotides Shew_0669 and Shew_0670 are separated by 116 nucleotides
Shew_0667: Shew_0667 - phosphoadenosine phosphosulfate reductase (RefSeq), at 758,921 to 759,673
_0667
Shew_0668: Shew_0668 - hypothetical protein (RefSeq), at 760,155 to 761,870
_0668
Shew_0669: Shew_0669 - redoxin domain-containing protein (RefSeq), at 761,972 to 762,502
_0669
Shew_0670: Shew_0670 - hypothetical protein (RefSeq), at 762,619 to 764,085
_0670
Position (kb) 760
761
762 Strain fitness (log2 ratio) -1
0
1
2 at 759.254 kb on + strand, within Shew_0667 at 759.262 kb on - strand, within Shew_0667 at 759.689 kb on - strand at 759.965 kb on + strand at 759.973 kb on - strand at 760.313 kb on + strand at 760.361 kb on + strand, within Shew_0668 at 760.574 kb on - strand, within Shew_0668 at 760.831 kb on + strand, within Shew_0668 at 760.877 kb on - strand, within Shew_0668 at 761.025 kb on + strand, within Shew_0668 at 761.188 kb on + strand, within Shew_0668 at 761.370 kb on - strand, within Shew_0668 at 761.599 kb on + strand, within Shew_0668 at 761.606 kb on - strand, within Shew_0668 at 761.606 kb on - strand, within Shew_0668 at 761.806 kb on - strand at 761.853 kb on - strand at 761.858 kb on - strand at 762.071 kb on + strand, within Shew_0669 at 762.243 kb on + strand, within Shew_0669 at 762.438 kb on + strand, within Shew_0669 at 762.438 kb on + strand, within Shew_0669 at 762.438 kb on + strand, within Shew_0669 at 762.864 kb on + strand, within Shew_0670
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 759,254 + Shew_0667 0.44 -0.7 759,262 - Shew_0667 0.45 -1.4 759,689 - -0.2 759,965 + -0.3 759,973 - -0.3 760,313 + -0.2 760,361 + Shew_0668 0.12 +2.4 760,574 - Shew_0668 0.24 +1.3 760,831 + Shew_0668 0.39 -0.1 760,877 - Shew_0668 0.42 -0.0 761,025 + Shew_0668 0.51 +0.0 761,188 + Shew_0668 0.60 +1.1 761,370 - Shew_0668 0.71 +0.9 761,599 + Shew_0668 0.84 -0.6 761,606 - Shew_0668 0.85 +0.4 761,606 - Shew_0668 0.85 +1.4 761,806 - -0.2 761,853 - +0.4 761,858 - +0.6 762,071 + Shew_0669 0.19 -0.4 762,243 + Shew_0669 0.51 +0.5 762,438 + Shew_0669 0.88 -0.2 762,438 + Shew_0669 0.88 -0.2 762,438 + Shew_0669 0.88 +0.4 762,864 + Shew_0670 0.17 -1.6
Or see this region's nucleotide sequence