Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0614 and Shew_0615 are separated by 154 nucleotides Shew_0615 and Shew_0616 are separated by 331 nucleotides
Shew_0614: Shew_0614 - cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq), at 695,749 to 697,524
_0614
Shew_0615: Shew_0615 - bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq), at 697,679 to 700,858
_0615
Shew_0616: Shew_0616 - SH3 domain-containing protein (RefSeq), at 701,190 to 701,738
_0616
Position (kb) 697
698
699
700
701 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 696.774 kb on - strand, within Shew_0614 at 697.106 kb on - strand, within Shew_0614 at 697.141 kb on + strand, within Shew_0614 at 697.151 kb on - strand, within Shew_0614 at 697.229 kb on - strand, within Shew_0614 at 697.365 kb on + strand at 698.809 kb on + strand, within Shew_0615 at 699.170 kb on + strand, within Shew_0615 at 699.512 kb on + strand, within Shew_0615 at 699.857 kb on - strand, within Shew_0615 at 699.879 kb on + strand, within Shew_0615 at 699.900 kb on + strand, within Shew_0615 at 699.944 kb on + strand, within Shew_0615 at 700.227 kb on + strand, within Shew_0615 at 700.447 kb on - strand, within Shew_0615 at 700.734 kb on + strand at 700.742 kb on - strand at 700.742 kb on - strand at 700.742 kb on - strand at 700.749 kb on + strand at 701.245 kb on - strand, within Shew_0616 at 701.453 kb on - strand, within Shew_0616 at 701.476 kb on + strand, within Shew_0616 at 701.517 kb on + strand, within Shew_0616 at 701.633 kb on + strand, within Shew_0616
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 696,774 - Shew_0614 0.58 +2.5 697,106 - Shew_0614 0.76 +2.4 697,141 + Shew_0614 0.78 +3.7 697,151 - Shew_0614 0.79 +1.4 697,229 - Shew_0614 0.83 +2.3 697,365 + +2.3 698,809 + Shew_0615 0.36 +0.6 699,170 + Shew_0615 0.47 +0.9 699,512 + Shew_0615 0.58 +1.7 699,857 - Shew_0615 0.68 +1.2 699,879 + Shew_0615 0.69 +1.6 699,900 + Shew_0615 0.70 -0.8 699,944 + Shew_0615 0.71 +1.4 700,227 + Shew_0615 0.80 +0.7 700,447 - Shew_0615 0.87 +1.4 700,734 + +1.8 700,742 - +1.0 700,742 - +1.6 700,742 - +1.0 700,749 + +1.7 701,245 - Shew_0616 0.10 -1.1 701,453 - Shew_0616 0.48 -0.2 701,476 + Shew_0616 0.52 +0.3 701,517 + Shew_0616 0.60 -2.4 701,633 + Shew_0616 0.81 -0.5
Or see this region's nucleotide sequence