Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0511 and Shew_0512 overlap by 8 nucleotides Shew_0512 and Shew_0513 overlap by 1 nucleotides
Shew_0511: Shew_0511 - HlyD family type I secretion membrane fusion protein (RefSeq), at 577,130 to 578,455
_0511
Shew_0512: Shew_0512 - ABC transporter-related protein (RefSeq), at 578,448 to 580,547
_0512
Shew_0513: Shew_0513 - ABC transporter-related protein (RefSeq), at 580,547 to 582,205
_0513
Position (kb) 578
579
580
581 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 577.453 kb on + strand, within Shew_0511 at 577.546 kb on - strand, within Shew_0511 at 577.634 kb on - strand, within Shew_0511 at 577.896 kb on + strand, within Shew_0511 at 577.919 kb on - strand, within Shew_0511 at 577.919 kb on - strand, within Shew_0511 at 578.103 kb on + strand, within Shew_0511 at 578.303 kb on - strand, within Shew_0511 at 578.329 kb on - strand at 578.539 kb on + strand at 578.547 kb on - strand at 578.547 kb on - strand at 578.547 kb on - strand at 578.547 kb on - strand at 578.642 kb on + strand at 578.893 kb on - strand, within Shew_0512 at 579.081 kb on + strand, within Shew_0512 at 579.179 kb on + strand, within Shew_0512 at 579.187 kb on - strand, within Shew_0512 at 579.291 kb on - strand, within Shew_0512 at 579.301 kb on - strand, within Shew_0512 at 579.301 kb on - strand, within Shew_0512 at 579.586 kb on + strand, within Shew_0512 at 579.644 kb on + strand, within Shew_0512 at 579.866 kb on + strand, within Shew_0512 at 579.891 kb on + strand, within Shew_0512 at 579.952 kb on + strand, within Shew_0512 at 579.960 kb on - strand, within Shew_0512 at 580.179 kb on + strand, within Shew_0512 at 580.187 kb on - strand, within Shew_0512 at 580.425 kb on + strand at 580.434 kb on + strand at 580.987 kb on - strand, within Shew_0513 at 581.008 kb on + strand, within Shew_0513 at 581.008 kb on + strand, within Shew_0513 at 581.388 kb on - strand, within Shew_0513 at 581.388 kb on - strand, within Shew_0513 at 581.436 kb on - strand, within Shew_0513 at 581.473 kb on - strand, within Shew_0513 at 581.511 kb on - strand, within Shew_0513
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 577,453 + Shew_0511 0.24 -0.5 577,546 - Shew_0511 0.31 -1.1 577,634 - Shew_0511 0.38 +1.7 577,896 + Shew_0511 0.58 -0.2 577,919 - Shew_0511 0.60 -0.1 577,919 - Shew_0511 0.60 +0.2 578,103 + Shew_0511 0.73 +0.3 578,303 - Shew_0511 0.88 +0.0 578,329 - +0.1 578,539 + -0.2 578,547 - -0.7 578,547 - -0.5 578,547 - -0.4 578,547 - -0.2 578,642 + +0.3 578,893 - Shew_0512 0.21 +0.2 579,081 + Shew_0512 0.30 -3.9 579,179 + Shew_0512 0.35 -0.6 579,187 - Shew_0512 0.35 -2.7 579,291 - Shew_0512 0.40 -3.2 579,301 - Shew_0512 0.41 -2.1 579,301 - Shew_0512 0.41 +0.0 579,586 + Shew_0512 0.54 -1.1 579,644 + Shew_0512 0.57 -0.7 579,866 + Shew_0512 0.68 +0.2 579,891 + Shew_0512 0.69 -0.6 579,952 + Shew_0512 0.72 -1.4 579,960 - Shew_0512 0.72 +0.1 580,179 + Shew_0512 0.82 -0.4 580,187 - Shew_0512 0.83 -2.5 580,425 + -0.5 580,434 + +0.1 580,987 - Shew_0513 0.27 -2.1 581,008 + Shew_0513 0.28 -0.4 581,008 + Shew_0513 0.28 -0.5 581,388 - Shew_0513 0.51 +0.1 581,388 - Shew_0513 0.51 +0.2 581,436 - Shew_0513 0.54 -1.0 581,473 - Shew_0513 0.56 +0.4 581,511 - Shew_0513 0.58 +0.2
Or see this region's nucleotide sequence