Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0445 and Shew_0446 are separated by 546 nucleotides Shew_0446 and Shew_0447 are separated by 77 nucleotides Shew_0447 and Shew_0448 overlap by 17 nucleotides Shew_0448 and Shew_0449 are separated by 60 nucleotides
Shew_0445: Shew_0445 - hypothetical protein (RefSeq), at 496,778 to 497,113
_0445
Shew_0446: Shew_0446 - hypothetical protein (RefSeq), at 497,660 to 497,920
_0446
Shew_0447: Shew_0447 - hypothetical protein (RefSeq), at 497,998 to 499,203
_0447
Shew_0448: Shew_0448 - periplasmic solute binding protein (RefSeq), at 499,187 to 500,098
_0448
Shew_0449: Shew_0449 - ABC-3 protein (RefSeq), at 500,159 to 500,950
_0449
Position (kb) 497
498
499
500 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 497.051 kb on - strand, within Shew_0445 at 497.221 kb on + strand at 497.229 kb on - strand at 497.229 kb on - strand at 497.250 kb on - strand at 497.676 kb on + strand at 497.684 kb on - strand at 497.811 kb on + strand, within Shew_0446 at 498.096 kb on + strand at 498.128 kb on - strand, within Shew_0447 at 498.150 kb on + strand, within Shew_0447 at 498.158 kb on - strand, within Shew_0447 at 498.188 kb on + strand, within Shew_0447 at 498.260 kb on + strand, within Shew_0447 at 498.323 kb on - strand, within Shew_0447 at 499.067 kb on - strand, within Shew_0447 at 499.378 kb on - strand, within Shew_0448 at 499.542 kb on + strand, within Shew_0448 at 499.644 kb on - strand, within Shew_0448 at 499.700 kb on + strand, within Shew_0448 at 500.006 kb on - strand, within Shew_0448
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 497,051 - Shew_0445 0.81 +0.2 497,221 + -0.7 497,229 - +0.7 497,229 - -0.3 497,250 - +0.5 497,676 + -0.9 497,684 - -1.1 497,811 + Shew_0446 0.58 -3.8 498,096 + +0.3 498,128 - Shew_0447 0.11 +0.4 498,150 + Shew_0447 0.13 -0.2 498,158 - Shew_0447 0.13 -0.7 498,188 + Shew_0447 0.16 -1.8 498,260 + Shew_0447 0.22 -0.7 498,323 - Shew_0447 0.27 +0.0 499,067 - Shew_0447 0.89 +0.1 499,378 - Shew_0448 0.21 -0.4 499,542 + Shew_0448 0.39 -0.3 499,644 - Shew_0448 0.50 +1.9 499,700 + Shew_0448 0.56 -0.7 500,006 - Shew_0448 0.90 -0.4
Or see this region's nucleotide sequence