Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0433 and Shew_0434 are separated by 92 nucleotides Shew_0434 and Shew_0435 are separated by 247 nucleotides Shew_0435 and Shew_0436 are separated by 14 nucleotides
Shew_0433: Shew_0433 - hypothetical protein (RefSeq), at 484,694 to 485,083
_0433
Shew_0434: Shew_0434 - hypothetical protein (RefSeq), at 485,176 to 485,487
_0434
Shew_0435: Shew_0435 - hypothetical protein (RefSeq), at 485,735 to 486,256
_0435
Shew_0436: Shew_0436 - diguanylate cyclase/phosphodiesterase (RefSeq), at 486,271 to 488,043
_0436
Position (kb) 485
486
487 Strain fitness (log2 ratio) -1
0
1 at 484.774 kb on + strand, within Shew_0433 at 484.781 kb on - strand, within Shew_0433 at 485.365 kb on + strand, within Shew_0434 at 485.406 kb on + strand, within Shew_0434 at 485.698 kb on - strand at 486.035 kb on - strand, within Shew_0435 at 486.333 kb on + strand at 486.443 kb on - strand at 486.482 kb on - strand, within Shew_0436 at 486.554 kb on - strand, within Shew_0436 at 486.709 kb on + strand, within Shew_0436 at 486.875 kb on - strand, within Shew_0436 at 486.905 kb on + strand, within Shew_0436 at 486.905 kb on + strand, within Shew_0436 at 487.012 kb on + strand, within Shew_0436 at 487.218 kb on + strand, within Shew_0436
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 484,774 + Shew_0433 0.21 +0.6 484,781 - Shew_0433 0.22 +0.1 485,365 + Shew_0434 0.61 +0.1 485,406 + Shew_0434 0.74 -0.8 485,698 - +1.2 486,035 - Shew_0435 0.57 -0.8 486,333 + -1.4 486,443 - +0.3 486,482 - Shew_0436 0.12 -0.3 486,554 - Shew_0436 0.16 -1.1 486,709 + Shew_0436 0.25 -0.1 486,875 - Shew_0436 0.34 -0.3 486,905 + Shew_0436 0.36 +0.3 486,905 + Shew_0436 0.36 -0.0 487,012 + Shew_0436 0.42 +0.4 487,218 + Shew_0436 0.53 +0.3
Or see this region's nucleotide sequence