Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0420 and Shew_0421 are separated by 185 nucleotides Shew_0421 and Shew_0422 are separated by 66 nucleotides Shew_0422 and Shew_0423 are separated by 77 nucleotides
Shew_0420: Shew_0420 - major facilitator transporter (RefSeq), at 473,839 to 475,071
_0420
Shew_0421: Shew_0421 - phage shock protein C, PspC (RefSeq), at 475,257 to 475,505
_0421
Shew_0422: Shew_0422 - hypothetical protein (RefSeq), at 475,572 to 476,057
_0422
Shew_0423: Shew_0423 - MerR family transcriptional regulator (RefSeq), at 476,135 to 476,557
_0423
Position (kb) 475
476 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 474.621 kb on + strand, within Shew_0420 at 474.643 kb on + strand, within Shew_0420 at 474.916 kb on + strand, within Shew_0420 at 474.939 kb on - strand, within Shew_0420 at 475.024 kb on - strand at 475.146 kb on + strand at 475.154 kb on - strand at 475.214 kb on - strand at 475.280 kb on + strand at 475.380 kb on - strand, within Shew_0421 at 475.415 kb on - strand, within Shew_0421 at 475.429 kb on + strand, within Shew_0421 at 475.573 kb on + strand at 475.644 kb on + strand, within Shew_0422 at 475.668 kb on + strand, within Shew_0422 at 475.766 kb on + strand, within Shew_0422 at 475.876 kb on + strand, within Shew_0422 at 475.876 kb on + strand, within Shew_0422 at 476.065 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 474,621 + Shew_0420 0.63 -0.2 474,643 + Shew_0420 0.65 +0.1 474,916 + Shew_0420 0.87 -0.0 474,939 - Shew_0420 0.89 -0.1 475,024 - -0.2 475,146 + +0.3 475,154 - +0.1 475,214 - -0.0 475,280 + -0.1 475,380 - Shew_0421 0.49 -0.1 475,415 - Shew_0421 0.63 -0.2 475,429 + Shew_0421 0.69 +5.4 475,573 + -0.7 475,644 + Shew_0422 0.15 +0.1 475,668 + Shew_0422 0.20 +0.3 475,766 + Shew_0422 0.40 +0.1 475,876 + Shew_0422 0.63 +0.2 475,876 + Shew_0422 0.63 +1.4 476,065 + -0.0
Or see this region's nucleotide sequence