Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0295 and Shew_0296 are separated by 378 nucleotides Shew_0296 and Shew_0297 are separated by 89 nucleotides Shew_0297 and Shew_0298 are separated by 125 nucleotides
Shew_0295: Shew_0295 - hypothetical protein (RefSeq), at 316,564 to 316,989
_0295
Shew_0296: Shew_0296 - heat shock protein Hsp20 (RefSeq), at 317,368 to 317,838
_0296
Shew_0297: Shew_0297 - hypothetical protein (RefSeq), at 317,928 to 319,835
_0297
Shew_0298: Shew_0298 - Zn-dependent hydrolase of the beta-lactamase fold (RefSeq), at 319,961 to 321,049
_0298
Position (kb) 317
318
319
320 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 317.028 kb on + strand at 317.213 kb on + strand at 317.223 kb on + strand at 317.223 kb on + strand at 317.294 kb on + strand at 317.768 kb on + strand, within Shew_0296 at 317.851 kb on + strand at 318.059 kb on - strand at 318.289 kb on + strand, within Shew_0297 at 318.289 kb on + strand, within Shew_0297 at 318.297 kb on - strand, within Shew_0297 at 318.297 kb on - strand, within Shew_0297 at 318.297 kb on - strand, within Shew_0297 at 318.297 kb on - strand, within Shew_0297 at 318.346 kb on + strand, within Shew_0297 at 318.448 kb on + strand, within Shew_0297 at 318.653 kb on + strand, within Shew_0297 at 318.675 kb on + strand, within Shew_0297 at 319.211 kb on - strand, within Shew_0297 at 319.325 kb on + strand, within Shew_0297 at 319.541 kb on + strand, within Shew_0297 at 319.541 kb on + strand, within Shew_0297 at 319.977 kb on + strand at 320.184 kb on - strand, within Shew_0298 at 320.208 kb on - strand, within Shew_0298 at 320.230 kb on - strand, within Shew_0298 at 320.337 kb on - strand, within Shew_0298 at 320.463 kb on + strand, within Shew_0298 at 320.513 kb on + strand, within Shew_0298 at 320.773 kb on - strand, within Shew_0298 at 320.778 kb on + strand, within Shew_0298 at 320.791 kb on - strand, within Shew_0298
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 317,028 + -0.6 317,213 + +0.5 317,223 + -0.4 317,223 + -0.1 317,294 + -0.1 317,768 + Shew_0296 0.85 +4.3 317,851 + -0.7 318,059 - -2.7 318,289 + Shew_0297 0.19 +0.1 318,289 + Shew_0297 0.19 +0.4 318,297 - Shew_0297 0.19 -0.4 318,297 - Shew_0297 0.19 +0.5 318,297 - Shew_0297 0.19 -2.3 318,297 - Shew_0297 0.19 -0.1 318,346 + Shew_0297 0.22 +0.6 318,448 + Shew_0297 0.27 +0.8 318,653 + Shew_0297 0.38 -0.3 318,675 + Shew_0297 0.39 -0.0 319,211 - Shew_0297 0.67 +0.5 319,325 + Shew_0297 0.73 -0.1 319,541 + Shew_0297 0.85 -1.1 319,541 + Shew_0297 0.85 -1.8 319,977 + -1.1 320,184 - Shew_0298 0.20 +0.4 320,208 - Shew_0298 0.23 -0.3 320,230 - Shew_0298 0.25 -0.0 320,337 - Shew_0298 0.35 +0.6 320,463 + Shew_0298 0.46 +0.2 320,513 + Shew_0298 0.51 -0.7 320,773 - Shew_0298 0.75 -0.5 320,778 + Shew_0298 0.75 +0.0 320,791 - Shew_0298 0.76 -0.3
Or see this region's nucleotide sequence