Strain Fitness in Shewanella loihica PV-4 around Shew_0268

Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0266 and Shew_0267 are separated by 69 nucleotidesShew_0267 and Shew_0268 are separated by 186 nucleotidesShew_0268 and Shew_0269 are separated by 96 nucleotides Shew_0266: Shew_0266 - hypothetical protein (RefSeq), at 284,873 to 285,085 _0266 Shew_0267: Shew_0267 - hypothetical protein (RefSeq), at 285,155 to 285,361 _0267 Shew_0268: Shew_0268 - transcriptional antiterminator, Rof (RefSeq), at 285,548 to 285,829 _0268 Shew_0269: Shew_0269 - hypothetical protein (RefSeq), at 285,926 to 286,813 _0269 Position (kb) 285 286Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 285.085 kb on + strandat 285.607 kb on + strand, within Shew_0268at 285.731 kb on - strand, within Shew_0268at 285.746 kb on - strand, within Shew_0268at 285.765 kb on + strand, within Shew_0268at 285.829 kb on - strandat 286.022 kb on - strand, within Shew_0269at 286.249 kb on + strand, within Shew_0269at 286.347 kb on + strand, within Shew_0269at 286.624 kb on + strand, within Shew_0269

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM
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285,085 + -0.9
285,607 + Shew_0268 0.21 -3.4
285,731 - Shew_0268 0.65 -0.1
285,746 - Shew_0268 0.70 +3.6
285,765 + Shew_0268 0.77 +0.1
285,829 - -0.6
286,022 - Shew_0269 0.11 -0.7
286,249 + Shew_0269 0.36 +0.7
286,347 + Shew_0269 0.47 -0.2
286,624 + Shew_0269 0.79 +0.8

Or see this region's nucleotide sequence