Experiment: 1-ethyl-3-methylimidazolium lysine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0190 and Shew_0191 are separated by 332 nucleotides Shew_0191 and Shew_0192 are separated by 191 nucleotides Shew_0192 and Shew_0193 are separated by 411 nucleotides
Shew_0190: Shew_0190 - cytochrome c biogenesis protein CcmA (RefSeq), at 196,133 to 196,783
_0190
Shew_0191: Shew_0191 - cytochrome c, class I (RefSeq), at 197,116 to 197,409
_0191
Shew_0192: Shew_0192 - TPR repeat-containing protein (RefSeq), at 197,601 to 198,851
_0192
Shew_0193: Shew_0193 - cytochrome c-type biogenesis protein CcmF (RefSeq), at 199,263 to 201,239
_0193
Position (kb) 197
198
199 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 196.862 kb on + strand at 196.963 kb on + strand at 196.963 kb on + strand at 196.971 kb on - strand at 197.058 kb on - strand at 197.076 kb on + strand at 197.149 kb on + strand, within Shew_0191 at 197.194 kb on + strand, within Shew_0191 at 197.202 kb on - strand, within Shew_0191 at 197.310 kb on - strand, within Shew_0191 at 197.620 kb on - strand at 197.664 kb on + strand at 197.755 kb on - strand, within Shew_0192 at 197.773 kb on - strand, within Shew_0192 at 197.773 kb on - strand, within Shew_0192 at 197.777 kb on + strand, within Shew_0192 at 197.787 kb on + strand, within Shew_0192 at 197.837 kb on + strand, within Shew_0192 at 197.950 kb on + strand, within Shew_0192 at 197.958 kb on - strand, within Shew_0192 at 198.200 kb on - strand, within Shew_0192 at 198.239 kb on - strand, within Shew_0192 at 198.253 kb on - strand, within Shew_0192 at 198.333 kb on + strand, within Shew_0192 at 198.426 kb on - strand, within Shew_0192 at 198.508 kb on - strand, within Shew_0192 at 198.552 kb on + strand, within Shew_0192 at 198.555 kb on - strand, within Shew_0192 at 198.560 kb on - strand, within Shew_0192 at 198.808 kb on - strand at 198.813 kb on - strand at 198.818 kb on - strand at 198.957 kb on - strand at 198.991 kb on - strand at 199.039 kb on + strand at 199.061 kb on + strand at 199.120 kb on - strand at 199.177 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium lysine 10 mM remove 196,862 + +0.2 196,963 + +0.6 196,963 + +0.2 196,971 - -0.7 197,058 - +2.3 197,076 + +1.5 197,149 + Shew_0191 0.11 +1.7 197,194 + Shew_0191 0.27 +2.4 197,202 - Shew_0191 0.29 +3.6 197,310 - Shew_0191 0.66 +2.2 197,620 - -1.1 197,664 + +0.5 197,755 - Shew_0192 0.12 +0.8 197,773 - Shew_0192 0.14 -5.0 197,773 - Shew_0192 0.14 +0.4 197,777 + Shew_0192 0.14 +0.3 197,787 + Shew_0192 0.15 -0.0 197,837 + Shew_0192 0.19 +0.9 197,950 + Shew_0192 0.28 +1.2 197,958 - Shew_0192 0.29 -0.8 198,200 - Shew_0192 0.48 +0.9 198,239 - Shew_0192 0.51 +1.0 198,253 - Shew_0192 0.52 +1.9 198,333 + Shew_0192 0.59 +1.0 198,426 - Shew_0192 0.66 +1.5 198,508 - Shew_0192 0.73 +3.3 198,552 + Shew_0192 0.76 +3.6 198,555 - Shew_0192 0.76 +3.3 198,560 - Shew_0192 0.77 +4.3 198,808 - +3.6 198,813 - +3.9 198,818 - +2.9 198,957 - +0.9 198,991 - +0.1 199,039 + -0.6 199,061 + -1.4 199,120 - -0.4 199,177 + +1.9
Or see this region's nucleotide sequence