Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0974

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0972 and Dshi_0973 are separated by 10 nucleotidesDshi_0973 and Dshi_0974 are separated by 113 nucleotidesDshi_0974 and Dshi_0975 are separated by 114 nucleotides Dshi_0972: Dshi_0972 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 993,455 to 994,285 _0972 Dshi_0973: Dshi_0973 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 994,296 to 995,162 _0973 Dshi_0974: Dshi_0974 - extracellular solute-binding protein family 1 (RefSeq), at 995,276 to 996,583 _0974 Dshi_0975: Dshi_0975 - transcriptional regulator, LacI family (RefSeq), at 996,698 to 997,732 _0975 Position (kb) 995 996 997Strain fitness (log2 ratio) -2 -1 0 1at 994.384 kb on - strand, within Dshi_0973at 994.447 kb on - strand, within Dshi_0973at 994.544 kb on - strand, within Dshi_0973at 994.600 kb on + strand, within Dshi_0973at 994.641 kb on - strand, within Dshi_0973at 994.679 kb on + strand, within Dshi_0973at 994.689 kb on + strand, within Dshi_0973at 994.740 kb on - strand, within Dshi_0973at 994.853 kb on - strand, within Dshi_0973at 994.915 kb on - strand, within Dshi_0973at 994.941 kb on + strand, within Dshi_0973at 994.954 kb on - strand, within Dshi_0973at 995.005 kb on + strand, within Dshi_0973at 995.037 kb on - strand, within Dshi_0973at 995.173 kb on - strandat 995.185 kb on - strandat 995.317 kb on - strandat 995.323 kb on - strandat 995.323 kb on - strandat 995.426 kb on - strand, within Dshi_0974at 995.578 kb on - strand, within Dshi_0974at 995.584 kb on - strand, within Dshi_0974at 995.584 kb on - strand, within Dshi_0974at 995.686 kb on + strand, within Dshi_0974at 995.820 kb on + strand, within Dshi_0974at 995.828 kb on - strand, within Dshi_0974at 995.851 kb on + strand, within Dshi_0974at 995.952 kb on + strand, within Dshi_0974at 995.970 kb on - strand, within Dshi_0974at 995.977 kb on + strand, within Dshi_0974at 995.977 kb on + strand, within Dshi_0974at 996.201 kb on - strand, within Dshi_0974at 996.201 kb on - strand, within Dshi_0974at 996.206 kb on - strand, within Dshi_0974at 996.226 kb on - strand, within Dshi_0974at 996.255 kb on + strand, within Dshi_0974at 996.294 kb on - strand, within Dshi_0974at 996.438 kb on - strand, within Dshi_0974at 996.550 kb on - strandat 996.550 kb on - strandat 996.625 kb on + strandat 996.777 kb on - strandat 996.836 kb on + strand, within Dshi_0975at 996.844 kb on + strand, within Dshi_0975at 996.872 kb on + strand, within Dshi_0975at 996.910 kb on - strand, within Dshi_0975at 997.080 kb on + strand, within Dshi_0975at 997.114 kb on + strand, within Dshi_0975at 997.231 kb on - strand, within Dshi_0975at 997.431 kb on - strand, within Dshi_0975at 997.521 kb on - strand, within Dshi_0975

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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994,384 - Dshi_0973 0.10 -0.5
994,447 - Dshi_0973 0.17 -0.2
994,544 - Dshi_0973 0.29 -0.0
994,600 + Dshi_0973 0.35 -0.8
994,641 - Dshi_0973 0.40 -0.3
994,679 + Dshi_0973 0.44 +0.3
994,689 + Dshi_0973 0.45 -0.8
994,740 - Dshi_0973 0.51 +0.2
994,853 - Dshi_0973 0.64 -0.7
994,915 - Dshi_0973 0.71 -0.2
994,941 + Dshi_0973 0.74 -0.2
994,954 - Dshi_0973 0.76 -0.7
995,005 + Dshi_0973 0.82 +0.5
995,037 - Dshi_0973 0.85 -0.5
995,173 - -1.9
995,185 - +1.0
995,317 - -0.0
995,323 - +0.1
995,323 - -1.2
995,426 - Dshi_0974 0.11 -0.4
995,578 - Dshi_0974 0.23 -1.6
995,584 - Dshi_0974 0.24 -0.6
995,584 - Dshi_0974 0.24 -0.6
995,686 + Dshi_0974 0.31 -0.6
995,820 + Dshi_0974 0.42 -1.3
995,828 - Dshi_0974 0.42 +0.6
995,851 + Dshi_0974 0.44 +0.4
995,952 + Dshi_0974 0.52 -1.2
995,970 - Dshi_0974 0.53 -0.1
995,977 + Dshi_0974 0.54 -0.3
995,977 + Dshi_0974 0.54 +0.5
996,201 - Dshi_0974 0.71 -0.0
996,201 - Dshi_0974 0.71 -1.8
996,206 - Dshi_0974 0.71 +0.3
996,226 - Dshi_0974 0.73 -0.8
996,255 + Dshi_0974 0.75 -0.0
996,294 - Dshi_0974 0.78 -1.6
996,438 - Dshi_0974 0.89 +0.1
996,550 - +0.5
996,550 - -0.0
996,625 + +1.0
996,777 - -0.0
996,836 + Dshi_0975 0.13 +0.6
996,844 + Dshi_0975 0.14 +0.2
996,872 + Dshi_0975 0.17 +0.4
996,910 - Dshi_0975 0.20 -0.0
997,080 + Dshi_0975 0.37 -1.8
997,114 + Dshi_0975 0.40 -0.0
997,231 - Dshi_0975 0.51 +0.2
997,431 - Dshi_0975 0.71 -1.8
997,521 - Dshi_0975 0.80 -0.8

Or see this region's nucleotide sequence