Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0833 and Dshi_0834 are separated by 93 nucleotides Dshi_0834 and Dshi_0835 are separated by 56 nucleotides
Dshi_0833: Dshi_0833 - AMP-dependent synthetase and ligase (RefSeq), at 841,358 to 842,983
_0833
Dshi_0834: Dshi_0834 - protein of unknown function DUF6 transmembrane (RefSeq), at 843,077 to 843,994
_0834
Dshi_0835: Dshi_0835 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq), at 844,051 to 846,264
_0835
Position (kb) 843
844 Strain fitness (log2 ratio) -1
0
1 at 842.170 kb on - strand, within Dshi_0833 at 842.187 kb on + strand, within Dshi_0833 at 842.382 kb on + strand, within Dshi_0833 at 842.390 kb on - strand, within Dshi_0833 at 842.390 kb on - strand, within Dshi_0833 at 842.390 kb on - strand, within Dshi_0833 at 842.409 kb on + strand, within Dshi_0833 at 842.883 kb on + strand at 842.888 kb on + strand at 842.888 kb on + strand at 842.992 kb on - strand at 843.051 kb on + strand at 843.121 kb on - strand at 843.191 kb on + strand, within Dshi_0834 at 843.240 kb on - strand, within Dshi_0834 at 843.591 kb on + strand, within Dshi_0834 at 843.668 kb on + strand, within Dshi_0834 at 843.687 kb on - strand, within Dshi_0834 at 843.827 kb on + strand, within Dshi_0834 at 844.203 kb on + strand at 844.301 kb on - strand, within Dshi_0835 at 844.307 kb on - strand, within Dshi_0835 at 844.316 kb on + strand, within Dshi_0835 at 844.367 kb on + strand, within Dshi_0835 at 844.406 kb on + strand, within Dshi_0835 at 844.416 kb on + strand, within Dshi_0835 at 844.547 kb on + strand, within Dshi_0835 at 844.817 kb on + strand, within Dshi_0835 at 844.879 kb on - strand, within Dshi_0835 at 844.889 kb on - strand, within Dshi_0835 at 844.898 kb on + strand, within Dshi_0835
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 842,170 - Dshi_0833 0.50 -0.1 842,187 + Dshi_0833 0.51 +0.3 842,382 + Dshi_0833 0.63 +0.7 842,390 - Dshi_0833 0.63 -0.3 842,390 - Dshi_0833 0.63 +0.9 842,390 - Dshi_0833 0.63 -0.0 842,409 + Dshi_0833 0.65 -0.4 842,883 + +1.6 842,888 + -0.7 842,888 + +0.3 842,992 - -1.2 843,051 + -0.4 843,121 - -1.0 843,191 + Dshi_0834 0.12 -0.3 843,240 - Dshi_0834 0.18 -0.9 843,591 + Dshi_0834 0.56 -1.4 843,668 + Dshi_0834 0.64 -0.7 843,687 - Dshi_0834 0.66 -0.3 843,827 + Dshi_0834 0.82 -1.1 844,203 + +0.9 844,301 - Dshi_0835 0.11 +0.5 844,307 - Dshi_0835 0.12 +0.1 844,316 + Dshi_0835 0.12 -0.3 844,367 + Dshi_0835 0.14 +1.0 844,406 + Dshi_0835 0.16 +0.9 844,416 + Dshi_0835 0.16 -0.1 844,547 + Dshi_0835 0.22 -0.9 844,817 + Dshi_0835 0.35 +0.3 844,879 - Dshi_0835 0.37 -0.0 844,889 - Dshi_0835 0.38 +0.6 844,898 + Dshi_0835 0.38 +0.7
Or see this region's nucleotide sequence