Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0182

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0181 and Dshi_0182 are separated by 104 nucleotidesDshi_0182 and Dshi_0183 overlap by 8 nucleotidesDshi_0183 and Dshi_0184 overlap by 4 nucleotides Dshi_0181: Dshi_0181 - methionyl-tRNA formyltransferase (RefSeq), at 184,186 to 185,085 _0181 Dshi_0182: Dshi_0182 - ribonuclease H (RefSeq), at 185,190 to 185,663 _0182 Dshi_0183: Dshi_0183 - Methyltransferase type 11 (RefSeq), at 185,656 to 186,255 _0183 Dshi_0184: Dshi_0184 - hypothetical protein (RefSeq), at 186,252 to 186,704 _0184 Position (kb) 185 186Strain fitness (log2 ratio) -1 0 1at 184.193 kb on - strandat 185.057 kb on + strandat 185.109 kb on + strandat 185.189 kb on - strandat 185.597 kb on - strand, within Dshi_0182at 185.678 kb on - strandat 185.801 kb on + strand, within Dshi_0183at 185.801 kb on + strand, within Dshi_0183at 185.844 kb on + strand, within Dshi_0183at 186.169 kb on - strand, within Dshi_0183at 186.425 kb on + strand, within Dshi_0184at 186.627 kb on - strand, within Dshi_0184

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
184,193 - -0.5
185,057 + -0.2
185,109 + -0.9
185,189 - +1.1
185,597 - Dshi_0182 0.86 -0.9
185,678 - +0.3
185,801 + Dshi_0183 0.24 -0.4
185,801 + Dshi_0183 0.24 -1.1
185,844 + Dshi_0183 0.31 -1.3
186,169 - Dshi_0183 0.85 -1.1
186,425 + Dshi_0184 0.38 -0.8
186,627 - Dshi_0184 0.83 -0.6

Or see this region's nucleotide sequence