Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3639

Experiment: BHIS with Benzethonium chloride 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3638 and BT3639 overlap by 1 nucleotidesBT3639 and BT3640 are separated by 9 nucleotidesBT3640 and BT3641 are separated by 202 nucleotides BT3638: BT3638 - Na+/H+ anti-porter (NCBI ptt file), at 4,714,360 to 4,716,495 BT3638 BT3639: BT3639 - ThiF family protein, putative dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis (NCBI ptt file), at 4,716,495 to 4,717,211 BT3639 BT3640: BT3640 - lipoprotein releasing system ATP-binding protein (NCBI ptt file), at 4,717,221 to 4,717,877 BT3640 BT3641: BT3641 - conserved hypothetical protein (NCBI ptt file), at 4,718,080 to 4,719,009 BT3641 Position (kb) 4716 4717 4718Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4715.718 kb on + strand, within BT3638at 4715.727 kb on + strand, within BT3638at 4715.727 kb on + strand, within BT3638at 4715.727 kb on + strand, within BT3638at 4715.855 kb on + strand, within BT3638at 4715.859 kb on + strand, within BT3638at 4715.880 kb on + strand, within BT3638at 4716.009 kb on + strand, within BT3638at 4716.253 kb on + strand, within BT3638at 4716.253 kb on + strand, within BT3638at 4716.574 kb on + strand, within BT3639at 4716.655 kb on + strand, within BT3639at 4716.917 kb on + strand, within BT3639at 4716.996 kb on + strand, within BT3639at 4717.157 kb on + strandat 4717.199 kb on + strandat 4717.217 kb on + strandat 4717.947 kb on - strandat 4717.950 kb on + strandat 4717.955 kb on - strandat 4717.973 kb on - strandat 4717.973 kb on - strandat 4718.060 kb on - strandat 4718.164 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Benzethonium chloride 0.002 mM
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4,715,718 + BT3638 0.64 +1.1
4,715,727 + BT3638 0.64 -1.2
4,715,727 + BT3638 0.64 +0.3
4,715,727 + BT3638 0.64 +0.3
4,715,855 + BT3638 0.70 +1.1
4,715,859 + BT3638 0.70 +1.1
4,715,880 + BT3638 0.71 -3.3
4,716,009 + BT3638 0.77 -0.7
4,716,253 + BT3638 0.89 -1.9
4,716,253 + BT3638 0.89 -0.1
4,716,574 + BT3639 0.11 -2.4
4,716,655 + BT3639 0.22 -1.6
4,716,917 + BT3639 0.59 -4.0
4,716,996 + BT3639 0.70 -0.7
4,717,157 + -0.6
4,717,199 + -1.0
4,717,217 + -1.8
4,717,947 - -1.9
4,717,950 + -0.4
4,717,955 - -0.1
4,717,973 - -1.0
4,717,973 - -0.7
4,718,060 - -2.1
4,718,164 + -1.7

Or see this region's nucleotide sequence