Experiment: MoLS4 with Casaminos 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2859 and DVU2860 are separated by 3 nucleotides DVU2860 and DVU2861 overlap by 17 nucleotides DVU2861 and DVU2862 overlap by 4 nucleotides DVU2862 and DVU2863 overlap by 4 nucleotides DVU2863 and DVU2864 are separated by 2 nucleotides
DVU2859: DVU2859 - tail sheath protein, putative (TIGR), at 2,958,791 to 2,960,254
DVU2859
DVU2860: DVU2860 - conserved hypothetical protein (TIGR), at 2,960,258 to 2,960,449
DVU2860
DVU2861: DVU2861 - hypothetical protein (TIGR), at 2,960,433 to 2,960,990
DVU2861
DVU2862: DVU2862 - hypothetical protein (TIGR), at 2,960,987 to 2,961,313
DVU2862
DVU2863: DVU2863 - hypothetical protein (TIGR), at 2,961,310 to 2,961,903
DVU2863
DVU2864: DVU2864 - hypothetical protein (TIGR), at 2,961,906 to 2,962,049
DVU2864
Position (kb)
2960
2961 Strain fitness (log2 ratio)
-1
0
1 at 2959.453 kb on + strand, within DVU2859 at 2959.930 kb on + strand, within DVU2859 at 2959.933 kb on - strand, within DVU2859 at 2959.988 kb on + strand, within DVU2859 at 2960.030 kb on - strand, within DVU2859 at 2960.703 kb on + strand, within DVU2861 at 2960.925 kb on - strand, within DVU2861 at 2960.925 kb on - strand, within DVU2861 at 2961.473 kb on - strand, within DVU2863 at 2961.473 kb on - strand, within DVU2863 at 2961.978 kb on + strand, within DVU2864 at 2961.978 kb on + strand, within DVU2864
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Casaminos 0.05% remove 2,959,453 + DVU2859 0.45 +1.1 2,959,930 + DVU2859 0.78 -0.2 2,959,933 - DVU2859 0.78 -1.0 2,959,988 + DVU2859 0.82 +0.1 2,960,030 - DVU2859 0.85 +0.3 2,960,703 + DVU2861 0.48 -0.4 2,960,925 - DVU2861 0.88 +0.1 2,960,925 - DVU2861 0.88 -1.5 2,961,473 - DVU2863 0.27 +0.2 2,961,473 - DVU2863 0.27 +1.1 2,961,978 + DVU2864 0.50 -1.0 2,961,978 + DVU2864 0.50 +0.1
Or see this region's nucleotide sequence