Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08920

Experiment: Formate N-free with 2mM Adenosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate N-free with 2mM Adenosine
1,644,147	-		MMJJ_RS08910	0.11	-2.5
1,644,167	-		MMJJ_RS08910	0.17	-0.1
1,644,176	-		MMJJ_RS08910	0.20	+1.1
1,644,176	-		MMJJ_RS08910	0.20	-0.6
1,644,176	-		MMJJ_RS08910	0.20	+1.5
1,644,176	-		MMJJ_RS08910	0.20	+2.1
1,644,176	-		MMJJ_RS08910	0.20	+1.7
1,644,176	-		MMJJ_RS08910	0.20	+5.4
1,644,176	-		MMJJ_RS08910	0.20	+4.1
1,644,177	+		MMJJ_RS08910	0.21	-1.2
1,644,177	+		MMJJ_RS08910	0.21	+0.9
1,644,177	+		MMJJ_RS08910	0.21	+0.3
1,644,177	+		MMJJ_RS08910	0.21	-2.2
1,644,180	-		MMJJ_RS08910	0.22	+0.6
1,644,181	+		MMJJ_RS08910	0.22	+1.8
1,644,219	-		MMJJ_RS08910	0.34	-1.0
1,644,219	-		MMJJ_RS08910	0.34	-0.2
1,644,220	+		MMJJ_RS08910	0.35	-1.5
1,644,253	+		MMJJ_RS08910	0.45	-2.1
1,644,293	-		MMJJ_RS08910	0.58	+1.9
1,644,301	+		MMJJ_RS08910	0.61	+0.5
1,644,306	-		MMJJ_RS08910	0.63	-0.3
1,644,359	-		MMJJ_RS08910	0.80	+3.2
1,644,360	+		MMJJ_RS08910	0.80	+1.2
1,644,360	+		MMJJ_RS08910	0.80	+1.1
1,644,362	-		MMJJ_RS08910	0.81	-0.9
1,644,379	+		MMJJ_RS08910	0.87	-2.2
1,644,433	-				+0.3
1,644,434	+				-3.2
1,644,438	+				+2.5
1,644,440	-				+0.9
1,644,455	-				-0.3
1,644,456	+				+2.8
1,644,456	+				+3.3
1,644,495	+				-3.4
1,644,507	-				-2.1
1,644,511	-				-2.1
1,644,511	-				+0.0
1,644,511	-				-3.0
1,644,511	-				-2.2
1,644,511	-				-2.7
1,644,511	-				+0.3
1,644,512	+				+0.5
1,644,512	+				-2.2
1,644,513	-				-1.1
1,644,516	-				-1.9
1,644,516	-				-1.3
1,644,516	-				-0.7
1,644,516	-				-2.3
1,644,516	-				-2.2
1,644,517	+				-1.2
1,644,518	-				-4.5
1,644,518	-				-3.2
1,644,518	-				-3.2
1,644,518	-				-1.5
1,644,518	-				+0.8
1,644,519	+				-3.3
1,644,519	+				-1.0
1,644,519	+				-2.9
1,644,520	-				-0.7
1,644,520	-				-2.4
1,644,521	+				+0.6
1,644,521	+				-1.2
1,644,521	+				-1.5
1,644,670	-		MMJJ_RS08915	0.21	-1.2
1,644,723	-		MMJJ_RS08915	0.31	-1.8
1,644,723	-		MMJJ_RS08915	0.31	-1.9
1,644,724	+		MMJJ_RS08915	0.31	-3.8
1,644,781	-		MMJJ_RS08915	0.41	-2.1
1,644,906	-		MMJJ_RS08915	0.64	-3.3
1,644,906	-		MMJJ_RS08915	0.64	-3.7
1,644,907	+		MMJJ_RS08915	0.64	-1.2
1,644,907	+		MMJJ_RS08915	0.64	-3.2
1,644,907	+		MMJJ_RS08915	0.64	-1.4
1,644,907	+		MMJJ_RS08915	0.64	-2.5
1,644,908	-		MMJJ_RS08915	0.64	-3.4
1,644,908	-		MMJJ_RS08915	0.64	-0.7
1,644,909	+		MMJJ_RS08915	0.65	-1.9
1,644,916	+		MMJJ_RS08915	0.66	-3.3
1,644,916	+		MMJJ_RS08915	0.66	-2.9
1,645,108	-				-1.7
1,645,109	+				-3.8
1,645,124	-				-0.5
1,645,178	-				-2.3
1,645,179	+				-2.1
1,645,179	+				-2.0
1,645,203	+				-2.9
1,645,241	+		MMJJ_RS08920	0.11	-1.9
1,645,359	+		MMJJ_RS08920	0.25	-1.9
1,645,359	+		MMJJ_RS08920	0.25	-1.2
1,645,370	+		MMJJ_RS08920	0.26	-2.2
1,645,370	+		MMJJ_RS08920	0.26	-2.7
1,645,370	+		MMJJ_RS08920	0.26	-2.0
1,645,414	-		MMJJ_RS08920	0.31	-3.6
1,645,495	-		MMJJ_RS08920	0.40	-2.2
1,645,495	-		MMJJ_RS08920	0.40	-0.2
1,645,559	+		MMJJ_RS08920	0.48	-1.2
1,645,567	-		MMJJ_RS08920	0.48	-2.9
1,645,606	-		MMJJ_RS08920	0.53	-1.1
1,645,685	-		MMJJ_RS08920	0.62	-1.4
1,645,686	+		MMJJ_RS08920	0.62	+0.1
1,645,693	-		MMJJ_RS08920	0.63	-0.0
1,645,698	-		MMJJ_RS08920	0.63	-2.5
1,645,698	-		MMJJ_RS08920	0.63	-3.5
1,645,699	+		MMJJ_RS08920	0.63	-1.1
1,645,699	+		MMJJ_RS08920	0.63	-2.5
1,645,699	+		MMJJ_RS08920	0.63	-1.3
1,645,706	-		MMJJ_RS08920	0.64	-2.3
1,645,707	+		MMJJ_RS08920	0.64	-3.0
1,645,739	+		MMJJ_RS08920	0.68	-1.6
1,645,739	+		MMJJ_RS08920	0.68	+0.8
1,645,739	+		MMJJ_RS08920	0.68	-3.3
1,645,746	+		MMJJ_RS08920	0.69	-2.7
1,645,804	-		MMJJ_RS08920	0.75	-3.1
1,645,804	-		MMJJ_RS08920	0.75	-2.6
1,645,828	-		MMJJ_RS08920	0.78	-3.2
1,645,828	-		MMJJ_RS08920	0.78	-3.0
1,645,828	-		MMJJ_RS08920	0.78	-3.5
1,645,828	-		MMJJ_RS08920	0.78	-0.2
1,645,828	-		MMJJ_RS08920	0.78	-1.0
1,645,829	+		MMJJ_RS08920	0.78	-1.3
1,645,829	+		MMJJ_RS08920	0.78	-2.5
1,645,829	+		MMJJ_RS08920	0.78	-1.7
1,645,829	+		MMJJ_RS08920	0.78	-2.5
1,645,829	+		MMJJ_RS08920	0.78	-0.1
1,645,846	-		MMJJ_RS08920	0.80	-0.6
1,645,847	+		MMJJ_RS08920	0.80	-3.4
1,645,847	+		MMJJ_RS08920	0.80	-1.4
1,645,886	+		MMJJ_RS08920	0.85	-4.4
1,645,896	-		MMJJ_RS08920	0.86	-1.7
1,645,912	-		MMJJ_RS08920	0.88	-2.2
1,645,912	-		MMJJ_RS08920	0.88	-2.0
1,645,912	-		MMJJ_RS08920	0.88	-2.6
1,645,913	+		MMJJ_RS08920	0.88	-3.7
1,645,913	+		MMJJ_RS08920	0.88	-1.0
1,645,913	+		MMJJ_RS08920	0.88	-1.5
1,645,913	+		MMJJ_RS08920	0.88	-4.3
1,645,913	+		MMJJ_RS08920	0.88	-2.9
1,645,918	-		MMJJ_RS08920	0.88	-0.9
1,645,918	-		MMJJ_RS08920	0.88	-3.7
1,645,918	-		MMJJ_RS08920	0.88	-2.4
1,645,919	+		MMJJ_RS08920	0.88	-1.1
1,645,931	+		MMJJ_RS08920	0.90	-2.2
1,645,976	+				+2.1
1,645,976	+				-1.8
1,645,982	-				-2.9
1,645,982	-				+1.2
1,645,999	-				+1.6
1,645,999	-				-2.0
1,646,016	-				+2.5
1,646,017	+				+3.2
1,646,019	-				-0.8
1,646,019	-				+1.4
1,646,062	-				+0.8
1,646,063	+				+3.4
1,646,063	+				+1.2
1,646,065	-				+0.6
1,646,069	-				-1.4
1,646,069	-				+0.2
1,646,069	-				+3.8
1,646,101	-				-1.0
1,646,112	+				-1.6
1,646,116	-				-2.2
1,646,117	+				-2.7
1,646,117	+				-0.8
1,646,297	+		MMJJ_RS08925	0.29	-2.2
1,646,330	+		MMJJ_RS08925	0.33	-3.2
1,646,335	+		MMJJ_RS08925	0.34	-2.1
1,646,339	-		MMJJ_RS08925	0.34	-2.1
1,646,339	-		MMJJ_RS08925	0.34	-2.7
1,646,391	-		MMJJ_RS08925	0.41	-1.9
1,646,415	-		MMJJ_RS08925	0.44	-2.5
1,646,415	-		MMJJ_RS08925	0.44	-3.3
1,646,415	-		MMJJ_RS08925	0.44	-2.2
1,646,416	+		MMJJ_RS08925	0.44	-1.0
1,646,416	+		MMJJ_RS08925	0.44	-2.2
1,646,434	-		MMJJ_RS08925	0.46	-2.0
1,646,434	-		MMJJ_RS08925	0.46	-2.9
1,646,434	-		MMJJ_RS08925	0.46	-2.1
1,646,470	-		MMJJ_RS08925	0.51	-1.0
1,646,471	+		MMJJ_RS08925	0.51	-0.2
1,646,510	-		MMJJ_RS08925	0.56	-2.9
1,646,510	-		MMJJ_RS08925	0.56	-1.9
1,646,510	-		MMJJ_RS08925	0.56	-2.6
1,646,511	+		MMJJ_RS08925	0.56	-2.8
1,646,511	+				+0.8
1,646,511	+		MMJJ_RS08925	0.56	-2.4
1,646,511	+		MMJJ_RS08925	0.56	-1.9
1,646,513	+		MMJJ_RS08925	0.56	-1.6
1,646,513	+		MMJJ_RS08925	0.56	-1.2
1,646,531	-		MMJJ_RS08925	0.58	-2.3
1,646,531	-		MMJJ_RS08925	0.58	-1.2
1,646,532	+		MMJJ_RS08925	0.58	-1.6
1,646,532	+		MMJJ_RS08925	0.58	-4.2
1,646,532	+		MMJJ_RS08925	0.58	-1.9
1,646,557	-		MMJJ_RS08925	0.62	-2.0
1,646,557	-		MMJJ_RS08925	0.62	-0.3
1,646,557	-		MMJJ_RS08925	0.62	-2.9
1,646,558	+		MMJJ_RS08925	0.62	-1.0
1,646,558	+				-0.5
1,646,558	+		MMJJ_RS08925	0.62	-1.7
1,646,558	+		MMJJ_RS08925	0.62	-1.0
1,646,558	+		MMJJ_RS08925	0.62	-0.5
1,646,558	+		MMJJ_RS08925	0.62	-2.4
1,646,560	+		MMJJ_RS08925	0.62	-2.1
1,646,615	+		MMJJ_RS08925	0.69	-3.0
1,646,684	+		MMJJ_RS08925	0.77	-2.7
1,646,684	+		MMJJ_RS08925	0.77	-1.5
1,646,764	-		MMJJ_RS08925	0.88	-3.5
1,646,774	+		MMJJ_RS08925	0.89	-1.3
1,646,796	-				-1.8
1,646,799	-				-2.5
1,646,799	-				-4.1
1,646,799	-				-1.9
1,646,799	-				-2.9
1,646,800	+				-1.3
1,646,847	-				-1.7
1,646,891	+				-2.2
1,646,903	-				-2.2
1,646,907	-				-0.7
1,646,908	+				-1.7
1,646,908	+				-4.5
1,646,920	-				-0.9
1,646,920	-				-1.4
1,646,920	-				-0.5
1,646,920	-				-2.0
1,646,920	-				+0.0
1,646,921	+				-2.4
1,646,921	+				-1.2
1,646,921	+				-1.7
1,646,922	-				-1.3
1,646,922	-				-3.7
1,646,922	-				-2.7
1,646,922	-				-2.5
1,646,922	-				-1.0
1,646,922	-				-3.2
1,646,922	-				-2.1
1,646,923	+				-3.1
1,646,923	+				-0.5
1,646,923	+				-1.0
1,646,923	+				-3.1
1,646,923	+				-3.2
1,646,923	+				-2.8
1,646,923	+				-3.5
1,646,923	+				-2.6
1,646,923	+				-0.2
1,646,924	-				-1.0
1,646,924	-				+3.2
1,646,924	-				+0.7
1,646,924	-				-1.7
1,646,926	-				+1.8
1,646,926	-				+1.8
1,646,927	+				-0.2
1,646,927	+				+1.1
1,646,927	+				+0.8
1,646,927	+				-0.7
1,646,927	+				-2.2
1,646,927	+				-0.6
1,646,927	+				-1.2
1,646,953	+				-0.7
1,646,995	+				+0.8
1,646,995	+				+1.4
1,646,999	-				-0.4
1,647,000	+				-1.9
1,647,006	-				+0.1
1,647,006	-				+4.5
1,647,006	-				-3.6