Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS07920

Experiment: Formate N-free with 2mM Adenosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate N-free with 2mM Adenosine
1,452,669	+		MMJJ_RS07910	0.62	+0.1
1,452,669	+		MMJJ_RS07910	0.62	+2.8
1,452,669	+		MMJJ_RS07910	0.62	-0.3
1,452,670	-		MMJJ_RS07910	0.62	+0.4
1,452,671	+		MMJJ_RS07910	0.62	+1.7
1,452,679	-		MMJJ_RS07910	0.63	-0.3
1,452,706	-		MMJJ_RS07910	0.66	-0.4
1,452,709	-		MMJJ_RS07910	0.66	+0.2
1,452,710	+		MMJJ_RS07910	0.67	+0.5
1,452,712	-		MMJJ_RS07910	0.67	-2.2
1,452,798	+		MMJJ_RS07910	0.77	-1.3
1,452,802	+		MMJJ_RS07910	0.78	+0.4
1,452,854	+		MMJJ_RS07910	0.84	-1.0
1,452,854	+		MMJJ_RS07910	0.84	-0.5
1,452,883	-		MMJJ_RS07910	0.87	+0.4
1,452,883	-		MMJJ_RS07910	0.87	-1.5
1,452,884	+		MMJJ_RS07910	0.87	-1.4
1,452,884	+		MMJJ_RS07910	0.87	+2.0
1,452,927	-				+1.6
1,452,939	-				+0.7
1,452,939	-				-0.6
1,452,940	+				-2.0
1,452,940	+				-0.2
1,452,946	-				+0.0
1,453,006	-				+2.8
1,453,153	-		MMJJ_RS07915	0.25	-0.8
1,453,178	+		MMJJ_RS07915	0.29	-2.9
1,453,178	+		MMJJ_RS07915	0.29	+1.7
1,453,200	+		MMJJ_RS07915	0.33	-0.6
1,453,200	+		MMJJ_RS07915	0.33	+3.8
1,453,208	+		MMJJ_RS07915	0.35	+1.6
1,453,218	+		MMJJ_RS07915	0.37	+3.3
1,453,222	-		MMJJ_RS07915	0.37	-2.0
1,453,222	-		MMJJ_RS07915	0.37	+2.6
1,453,227	+		MMJJ_RS07915	0.38	-1.0
1,453,268	-		MMJJ_RS07915	0.45	-0.5
1,453,331	-		MMJJ_RS07915	0.57	-2.7
1,453,361	-		MMJJ_RS07915	0.62	-1.2
1,453,361	-		MMJJ_RS07915	0.62	-1.8
1,453,449	+		MMJJ_RS07915	0.78	+1.3
1,453,458	+		MMJJ_RS07915	0.79	+0.5
1,453,458	+		MMJJ_RS07915	0.79	-3.5
1,453,500	-		MMJJ_RS07915	0.87	-1.0
1,453,501	+		MMJJ_RS07915	0.87	-0.6
1,453,521	+				+3.1
1,453,605	+				-1.2
1,453,605	+				+1.9
1,453,626	-				-0.1
1,453,626	-				-0.5
1,453,626	-				+2.1
1,453,626	-				+1.6
1,453,626	-				+2.9
1,453,627	+				-2.1
1,453,627	+				+1.7
1,453,657	-				+0.3
1,453,657	-				+2.9
1,453,658	+				-1.0
1,453,662	-				+0.7
1,453,676	-				+4.8
1,453,676	-				+1.0
1,453,676	-				-2.4
1,453,677	+				+1.3
1,453,683	-				-1.4
1,453,683	-				-1.5
1,453,684	+				+2.1
1,453,712	-				-1.8
1,453,713	+				+2.3
1,453,713	+				+2.2
1,453,717	-		MMJJ_RS07920	0.11	+5.7
1,453,718	+		MMJJ_RS07920	0.11	-0.6
1,453,776	-		MMJJ_RS07920	0.22	+3.3
1,453,776	-		MMJJ_RS07920	0.22	+1.4
1,453,776	-		MMJJ_RS07920	0.22	+4.5
1,453,776	-		MMJJ_RS07920	0.22	+1.1
1,453,776	-		MMJJ_RS07920	0.22	+3.6
1,453,776	-		MMJJ_RS07920	0.22	-1.3
1,453,776	-		MMJJ_RS07920	0.22	+4.1
1,453,777	+		MMJJ_RS07920	0.22	+6.6
1,453,777	+		MMJJ_RS07920	0.22	+2.1
1,453,777	+		MMJJ_RS07920	0.22	+6.1
1,453,777	+		MMJJ_RS07920	0.22	+4.9
1,453,777	+		MMJJ_RS07920	0.22	-0.1
1,453,788	-		MMJJ_RS07920	0.25	+3.2
1,453,797	+		MMJJ_RS07920	0.26	+0.8
1,453,829	-		MMJJ_RS07920	0.33	+1.1
1,453,834	-		MMJJ_RS07920	0.34	+0.5
1,453,834	-		MMJJ_RS07920	0.34	+4.4
1,453,892	-		MMJJ_RS07920	0.45	+2.6
1,453,892	-		MMJJ_RS07920	0.45	-1.5
1,453,893	+		MMJJ_RS07920	0.45	+1.0
1,453,893	+		MMJJ_RS07920	0.45	+5.0
1,453,893	+		MMJJ_RS07920	0.45	-2.0
1,453,896	-		MMJJ_RS07920	0.46	-2.9
1,453,896	-		MMJJ_RS07920	0.46	+2.0
1,453,958	+		MMJJ_RS07920	0.58	-2.3
1,453,985	-		MMJJ_RS07920	0.64	+1.9
1,454,000	-		MMJJ_RS07920	0.67	+1.6
1,454,060	-		MMJJ_RS07920	0.79	-2.6
1,454,061	+		MMJJ_RS07920	0.79	-0.5
1,454,061	+		MMJJ_RS07920	0.79	-0.8
1,454,064	-		MMJJ_RS07920	0.79	+4.8
1,454,064	-		MMJJ_RS07920	0.79	+0.4
1,454,065	+		MMJJ_RS07920	0.80	+2.2
1,454,065	+		MMJJ_RS07920	0.80	+3.5
1,454,067	-		MMJJ_RS07920	0.80	+1.8
1,454,068	+		MMJJ_RS07920	0.80	+2.4
1,454,084	-		MMJJ_RS07920	0.83	+1.1
1,454,085	+		MMJJ_RS07920	0.84	+3.6
1,454,109	+		MMJJ_RS07920	0.88	-2.1
1,454,109	+		MMJJ_RS07920	0.88	-0.8
1,454,109	+		MMJJ_RS07920	0.88	+4.0
1,454,109	+		MMJJ_RS07920	0.88	+4.9
1,454,109	+		MMJJ_RS07920	0.88	-2.6
1,454,159	-				+3.4
1,454,167	-				+2.2
1,454,168	+				+3.6
1,454,168	+				+2.4
1,454,170	-				+3.5
1,454,170	-				+3.7
1,454,171	+				+2.3
1,454,185	-				-1.5
1,454,186	+				+2.6
1,454,186	+				-2.3
1,454,186	+				+0.5
1,454,187	-				-1.3
1,454,188	+				+0.5
1,454,195	+				-0.2
1,454,195	+				+0.6
1,454,197	-				+4.5
1,454,197	-				+0.4
1,454,198	+				+1.0
1,454,198	+				+0.4
1,454,198	+				+0.4
1,454,198	+				+2.0
1,454,198	+				-0.5
1,454,198	+				+1.0
1,454,198	+				-2.2
1,454,199	-				-0.5
1,454,199	-				+2.1
1,454,199	-				+2.7
1,454,199	-				+1.7
1,454,199	-				-1.8
1,454,199	-				-0.1
1,454,199	-				-1.3
1,454,199	-				-3.0
1,454,199	-				+0.4
1,454,199	-				+2.1
1,454,199	-				+3.3
1,454,199	-				+3.1
1,454,199	-				-1.4
1,454,199	-				+1.6
1,454,199	-				+0.3
1,454,199	-				-0.8
1,454,199	-				-2.0
1,454,199	-				+1.3
1,454,199	-				-1.9
1,454,199	-				-0.2
1,454,199	-				+0.9
1,454,199	-				-4.5
1,454,200	+				+3.6
1,454,200	+				+1.0
1,454,200	+				-2.1
1,454,200	+				-4.6
1,454,200	+				+1.5
1,454,200	+				+0.4
1,454,200	+				+2.8
1,454,200	+				-1.5
1,454,200	+				+3.7
1,454,203	-				+1.3
1,454,203	-				-1.5
1,454,203	-				+3.3
1,454,203	-				+2.2
1,454,203	-				+0.2
1,454,204	+				+2.0
1,454,204	+				+1.3
1,454,204	+				+0.4
1,454,204	+				-0.3
1,454,204	+				+0.3
1,454,204	+				+0.2
1,454,204	+				+1.4
1,454,205	-				+0.4
1,454,205	-				-2.0
1,454,205	-				+2.0
1,454,206	+				-1.2
1,454,206	+				+1.1
1,454,206	+				-2.9
1,454,206	+				+1.1
1,454,212	+				+1.9
1,454,231	+				-2.4
1,454,261	-				+1.0
1,454,267	+				-0.1
1,454,275	+				+0.5
1,454,275	+				-0.9
1,455,118	-				+0.5
1,455,118	-				-2.6