Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06755

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS06750 and MMJJ_RS06755 are separated by 113 nucleotidesMMJJ_RS06755 and MMJJ_RS06760 are separated by 15 nucleotides MMJJ_RS06750: MMJJ_RS06750 - homoaconitase large subunit, at 1,245,728 to 1,246,984 _RS06750 MMJJ_RS06755: MMJJ_RS06755 - diadenylate cyclase, at 1,247,098 to 1,248,036 _RS06755 MMJJ_RS06760: MMJJ_RS06760 - Ni-sirohydrochlorin a,c-diamide synthase, at 1,248,052 to 1,249,395 _RS06760 Position (kb) 1247 1248 1249Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1246.104 kb on + strand, within MMJJ_RS06750at 1246.185 kb on + strandat 1246.425 kb on - strand, within MMJJ_RS06750at 1246.618 kb on - strand, within MMJJ_RS06750at 1246.723 kb on - strand, within MMJJ_RS06750at 1246.871 kb on + strandat 1246.998 kb on + strandat 1247.005 kb on - strandat 1247.006 kb on + strandat 1247.008 kb on - strandat 1247.008 kb on - strandat 1247.008 kb on - strandat 1247.010 kb on - strandat 1247.010 kb on - strandat 1247.010 kb on - strandat 1247.010 kb on - strandat 1247.010 kb on - strandat 1247.010 kb on - strandat 1247.010 kb on - strandat 1247.011 kb on + strandat 1247.011 kb on + strandat 1247.011 kb on + strandat 1247.011 kb on + strandat 1247.011 kb on + strandat 1247.014 kb on - strandat 1247.023 kb on - strandat 1247.030 kb on - strandat 1247.030 kb on - strandat 1247.030 kb on - strandat 1247.030 kb on - strandat 1247.030 kb on - strandat 1247.031 kb on + strandat 1247.031 kb on + strandat 1247.052 kb on - strandat 1247.053 kb on + strandat 1247.056 kb on - strandat 1247.056 kb on - strandat 1247.058 kb on - strandat 1247.067 kb on - strandat 1247.067 kb on - strandat 1247.068 kb on + strandat 1247.094 kb on + strandat 1247.094 kb on + strandat 1247.095 kb on - strandat 1247.103 kb on + strandat 1247.122 kb on + strandat 1247.153 kb on + strandat 1247.299 kb on - strand, within MMJJ_RS06755at 1247.299 kb on - strand, within MMJJ_RS06755at 1247.300 kb on + strand, within MMJJ_RS06755at 1247.300 kb on + strand, within MMJJ_RS06755at 1247.303 kb on - strand, within MMJJ_RS06755at 1247.303 kb on - strand, within MMJJ_RS06755at 1247.366 kb on + strand, within MMJJ_RS06755at 1247.402 kb on + strand, within MMJJ_RS06755at 1247.402 kb on + strand, within MMJJ_RS06755at 1247.403 kb on - strand, within MMJJ_RS06755at 1247.456 kb on + strand, within MMJJ_RS06755at 1247.480 kb on + strand, within MMJJ_RS06755at 1247.485 kb on - strand, within MMJJ_RS06755at 1247.591 kb on - strandat 1247.591 kb on - strand, within MMJJ_RS06755at 1247.592 kb on + strand, within MMJJ_RS06755at 1247.598 kb on + strand, within MMJJ_RS06755at 1247.600 kb on - strand, within MMJJ_RS06755at 1247.626 kb on - strand, within MMJJ_RS06755at 1247.663 kb on + strand, within MMJJ_RS06755at 1247.663 kb on + strand, within MMJJ_RS06755at 1247.673 kb on - strand, within MMJJ_RS06755at 1247.673 kb on - strand, within MMJJ_RS06755at 1247.706 kb on - strand, within MMJJ_RS06755at 1247.715 kb on - strand, within MMJJ_RS06755at 1247.716 kb on + strand, within MMJJ_RS06755at 1247.760 kb on - strand, within MMJJ_RS06755at 1247.772 kb on - strand, within MMJJ_RS06755at 1247.772 kb on - strand, within MMJJ_RS06755at 1247.772 kb on - strand, within MMJJ_RS06755at 1247.772 kb on - strand, within MMJJ_RS06755at 1247.773 kb on + strand, within MMJJ_RS06755at 1247.773 kb on + strand, within MMJJ_RS06755at 1247.773 kb on + strand, within MMJJ_RS06755at 1247.773 kb on + strand, within MMJJ_RS06755at 1247.773 kb on + strand, within MMJJ_RS06755at 1247.773 kb on + strand, within MMJJ_RS06755at 1247.774 kb on - strand, within MMJJ_RS06755at 1247.774 kb on - strand, within MMJJ_RS06755at 1247.774 kb on - strand, within MMJJ_RS06755at 1247.775 kb on + strand, within MMJJ_RS06755at 1247.775 kb on + strand, within MMJJ_RS06755at 1247.846 kb on + strand, within MMJJ_RS06755at 1247.852 kb on + strand, within MMJJ_RS06755at 1247.857 kb on - strand, within MMJJ_RS06755at 1247.903 kb on - strand, within MMJJ_RS06755at 1247.904 kb on + strand, within MMJJ_RS06755at 1247.904 kb on + strand, within MMJJ_RS06755at 1247.904 kb on + strand, within MMJJ_RS06755at 1247.905 kb on - strand, within MMJJ_RS06755at 1247.906 kb on + strand, within MMJJ_RS06755at 1247.924 kb on - strand, within MMJJ_RS06755at 1247.925 kb on + strand, within MMJJ_RS06755at 1247.927 kb on - strand, within MMJJ_RS06755at 1247.933 kb on - strand, within MMJJ_RS06755at 1247.983 kb on - strandat 1247.983 kb on - strandat 1248.007 kb on - strandat 1248.027 kb on - strandat 1248.028 kb on + strandat 1248.031 kb on - strandat 1248.031 kb on - strandat 1248.031 kb on - strandat 1248.032 kb on + strandat 1248.088 kb on + strandat 1248.094 kb on + strandat 1248.143 kb on + strandat 1248.143 kb on + strandat 1248.159 kb on - strandat 1248.163 kb on - strandat 1248.182 kb on + strandat 1248.210 kb on - strand, within MMJJ_RS06760at 1248.210 kb on - strandat 1248.211 kb on + strand, within MMJJ_RS06760at 1248.214 kb on - strand, within MMJJ_RS06760at 1248.217 kb on - strand, within MMJJ_RS06760at 1248.302 kb on - strand, within MMJJ_RS06760at 1248.390 kb on + strand, within MMJJ_RS06760at 1248.439 kb on + strand, within MMJJ_RS06760at 1248.456 kb on - strand, within MMJJ_RS06760at 1248.463 kb on + strand, within MMJJ_RS06760at 1248.506 kb on - strand, within MMJJ_RS06760at 1248.511 kb on + strand, within MMJJ_RS06760at 1248.511 kb on + strand, within MMJJ_RS06760at 1248.511 kb on + strand, within MMJJ_RS06760at 1249.006 kb on - strand, within MMJJ_RS06760

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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1,246,104 + MMJJ_RS06750 0.30 -0.2
1,246,185 + +0.8
1,246,425 - MMJJ_RS06750 0.55 -0.5
1,246,618 - MMJJ_RS06750 0.71 -1.5
1,246,723 - MMJJ_RS06750 0.79 -1.5
1,246,871 + +1.4
1,246,998 + -0.2
1,247,005 - -2.0
1,247,006 + -0.6
1,247,008 - -0.2
1,247,008 - +0.7
1,247,008 - -2.5
1,247,010 - -2.4
1,247,010 - +0.8
1,247,010 - -2.1
1,247,010 - -1.6
1,247,010 - +0.4
1,247,010 - +0.4
1,247,010 - -1.4
1,247,011 + +1.0
1,247,011 + +0.0
1,247,011 + +0.7
1,247,011 + -0.3
1,247,011 + -1.2
1,247,014 - +2.3
1,247,023 - -0.4
1,247,030 - -1.1
1,247,030 - -0.5
1,247,030 - +0.5
1,247,030 - -0.3
1,247,030 - -0.8
1,247,031 + -1.8
1,247,031 + -0.6
1,247,052 - +0.6
1,247,053 + +2.1
1,247,056 - -0.7
1,247,056 - -0.1
1,247,058 - +0.1
1,247,067 - -2.5
1,247,067 - -1.9
1,247,068 + +1.6
1,247,094 + -0.8
1,247,094 + +3.5
1,247,095 - +0.5
1,247,103 + -0.6
1,247,122 + -1.9
1,247,153 + -0.3
1,247,299 - MMJJ_RS06755 0.21 -3.1
1,247,299 - MMJJ_RS06755 0.21 -2.8
1,247,300 + MMJJ_RS06755 0.22 -1.4
1,247,300 + MMJJ_RS06755 0.22 +0.0
1,247,303 - MMJJ_RS06755 0.22 -0.6
1,247,303 - MMJJ_RS06755 0.22 -1.6
1,247,366 + MMJJ_RS06755 0.29 -0.8
1,247,402 + MMJJ_RS06755 0.32 -3.0
1,247,402 + MMJJ_RS06755 0.32 -1.4
1,247,403 - MMJJ_RS06755 0.32 -3.0
1,247,456 + MMJJ_RS06755 0.38 -1.3
1,247,480 + MMJJ_RS06755 0.41 -2.3
1,247,485 - MMJJ_RS06755 0.41 -2.0
1,247,591 - +0.0
1,247,591 - MMJJ_RS06755 0.53 -2.9
1,247,592 + MMJJ_RS06755 0.53 -1.7
1,247,598 + MMJJ_RS06755 0.53 -3.0
1,247,600 - MMJJ_RS06755 0.53 -4.1
1,247,626 - MMJJ_RS06755 0.56 -2.3
1,247,663 + MMJJ_RS06755 0.60 -2.7
1,247,663 + MMJJ_RS06755 0.60 -1.8
1,247,673 - MMJJ_RS06755 0.61 -1.1
1,247,673 - MMJJ_RS06755 0.61 -2.8
1,247,706 - MMJJ_RS06755 0.65 -1.9
1,247,715 - MMJJ_RS06755 0.66 -1.8
1,247,716 + MMJJ_RS06755 0.66 -2.0
1,247,760 - MMJJ_RS06755 0.71 -3.2
1,247,772 - MMJJ_RS06755 0.72 -2.2
1,247,772 - MMJJ_RS06755 0.72 -1.2
1,247,772 - MMJJ_RS06755 0.72 -0.4
1,247,772 - MMJJ_RS06755 0.72 -3.2
1,247,773 + MMJJ_RS06755 0.72 -2.4
1,247,773 + MMJJ_RS06755 0.72 +0.0
1,247,773 + MMJJ_RS06755 0.72 -3.0
1,247,773 + MMJJ_RS06755 0.72 -2.0
1,247,773 + MMJJ_RS06755 0.72 -0.7
1,247,773 + MMJJ_RS06755 0.72 -2.3
1,247,774 - MMJJ_RS06755 0.72 -1.3
1,247,774 - MMJJ_RS06755 0.72 -2.0
1,247,774 - MMJJ_RS06755 0.72 -0.8
1,247,775 + MMJJ_RS06755 0.72 -2.1
1,247,775 + MMJJ_RS06755 0.72 -1.7
1,247,846 + MMJJ_RS06755 0.80 -1.0
1,247,852 + MMJJ_RS06755 0.80 -3.8
1,247,857 - MMJJ_RS06755 0.81 -1.6
1,247,903 - MMJJ_RS06755 0.86 -0.6
1,247,904 + MMJJ_RS06755 0.86 -3.0
1,247,904 + MMJJ_RS06755 0.86 -2.6
1,247,904 + MMJJ_RS06755 0.86 -0.4
1,247,905 - MMJJ_RS06755 0.86 -1.3
1,247,906 + MMJJ_RS06755 0.86 -1.3
1,247,924 - MMJJ_RS06755 0.88 -2.8
1,247,925 + MMJJ_RS06755 0.88 -2.9
1,247,927 - MMJJ_RS06755 0.88 +0.4
1,247,933 - MMJJ_RS06755 0.89 -1.7
1,247,983 - -3.0
1,247,983 - -3.6
1,248,007 - -1.8
1,248,027 - -0.1
1,248,028 + -4.0
1,248,031 - -2.2
1,248,031 - -1.4
1,248,031 - -1.1
1,248,032 + -1.1
1,248,088 + +0.0
1,248,094 + -0.2
1,248,143 + +0.3
1,248,143 + -0.8
1,248,159 - -2.2
1,248,163 - -0.6
1,248,182 + -0.5
1,248,210 - MMJJ_RS06760 0.12 -0.2
1,248,210 - -0.2
1,248,211 + MMJJ_RS06760 0.12 -1.6
1,248,214 - MMJJ_RS06760 0.12 -0.3
1,248,217 - MMJJ_RS06760 0.12 +0.2
1,248,302 - MMJJ_RS06760 0.19 +0.8
1,248,390 + MMJJ_RS06760 0.25 -3.7
1,248,439 + MMJJ_RS06760 0.29 -1.0
1,248,456 - MMJJ_RS06760 0.30 -1.5
1,248,463 + MMJJ_RS06760 0.31 -2.2
1,248,506 - MMJJ_RS06760 0.34 -0.8
1,248,511 + MMJJ_RS06760 0.34 -1.1
1,248,511 + MMJJ_RS06760 0.34 +4.2
1,248,511 + MMJJ_RS06760 0.34 -1.5
1,249,006 - MMJJ_RS06760 0.71 +2.0

Or see this region's nucleotide sequence