Experiment: Formate N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS06750 and MMJJ_RS06755 are separated by 113 nucleotides MMJJ_RS06755 and MMJJ_RS06760 are separated by 15 nucleotides
MMJJ_RS06750: MMJJ_RS06750 - homoaconitase large subunit, at 1,245,728 to 1,246,984
_RS06750
MMJJ_RS06755: MMJJ_RS06755 - diadenylate cyclase, at 1,247,098 to 1,248,036
_RS06755
MMJJ_RS06760: MMJJ_RS06760 - Ni-sirohydrochlorin a,c-diamide synthase, at 1,248,052 to 1,249,395
_RS06760
Position (kb)
1247
1248
1249 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1246.104 kb on + strand, within MMJJ_RS06750 at 1246.185 kb on + strand at 1246.425 kb on - strand, within MMJJ_RS06750 at 1246.618 kb on - strand, within MMJJ_RS06750 at 1246.723 kb on - strand, within MMJJ_RS06750 at 1246.871 kb on + strand at 1246.998 kb on + strand at 1247.005 kb on - strand at 1247.006 kb on + strand at 1247.008 kb on - strand at 1247.008 kb on - strand at 1247.008 kb on - strand at 1247.010 kb on - strand at 1247.010 kb on - strand at 1247.010 kb on - strand at 1247.010 kb on - strand at 1247.010 kb on - strand at 1247.010 kb on - strand at 1247.010 kb on - strand at 1247.011 kb on + strand at 1247.011 kb on + strand at 1247.011 kb on + strand at 1247.011 kb on + strand at 1247.011 kb on + strand at 1247.014 kb on - strand at 1247.023 kb on - strand at 1247.030 kb on - strand at 1247.030 kb on - strand at 1247.030 kb on - strand at 1247.030 kb on - strand at 1247.030 kb on - strand at 1247.031 kb on + strand at 1247.031 kb on + strand at 1247.052 kb on - strand at 1247.053 kb on + strand at 1247.056 kb on - strand at 1247.056 kb on - strand at 1247.058 kb on - strand at 1247.067 kb on - strand at 1247.067 kb on - strand at 1247.068 kb on + strand at 1247.094 kb on + strand at 1247.094 kb on + strand at 1247.095 kb on - strand at 1247.103 kb on + strand at 1247.122 kb on + strand at 1247.153 kb on + strand at 1247.299 kb on - strand, within MMJJ_RS06755 at 1247.299 kb on - strand, within MMJJ_RS06755 at 1247.300 kb on + strand, within MMJJ_RS06755 at 1247.300 kb on + strand, within MMJJ_RS06755 at 1247.303 kb on - strand, within MMJJ_RS06755 at 1247.303 kb on - strand, within MMJJ_RS06755 at 1247.366 kb on + strand, within MMJJ_RS06755 at 1247.402 kb on + strand, within MMJJ_RS06755 at 1247.402 kb on + strand, within MMJJ_RS06755 at 1247.403 kb on - strand, within MMJJ_RS06755 at 1247.456 kb on + strand, within MMJJ_RS06755 at 1247.480 kb on + strand, within MMJJ_RS06755 at 1247.485 kb on - strand, within MMJJ_RS06755 at 1247.591 kb on - strand at 1247.591 kb on - strand, within MMJJ_RS06755 at 1247.592 kb on + strand, within MMJJ_RS06755 at 1247.598 kb on + strand, within MMJJ_RS06755 at 1247.600 kb on - strand, within MMJJ_RS06755 at 1247.626 kb on - strand, within MMJJ_RS06755 at 1247.663 kb on + strand, within MMJJ_RS06755 at 1247.663 kb on + strand, within MMJJ_RS06755 at 1247.673 kb on - strand, within MMJJ_RS06755 at 1247.673 kb on - strand, within MMJJ_RS06755 at 1247.706 kb on - strand, within MMJJ_RS06755 at 1247.715 kb on - strand, within MMJJ_RS06755 at 1247.716 kb on + strand, within MMJJ_RS06755 at 1247.760 kb on - strand, within MMJJ_RS06755 at 1247.772 kb on - strand, within MMJJ_RS06755 at 1247.772 kb on - strand, within MMJJ_RS06755 at 1247.772 kb on - strand, within MMJJ_RS06755 at 1247.772 kb on - strand, within MMJJ_RS06755 at 1247.773 kb on + strand, within MMJJ_RS06755 at 1247.773 kb on + strand, within MMJJ_RS06755 at 1247.773 kb on + strand, within MMJJ_RS06755 at 1247.773 kb on + strand, within MMJJ_RS06755 at 1247.773 kb on + strand, within MMJJ_RS06755 at 1247.773 kb on + strand, within MMJJ_RS06755 at 1247.774 kb on - strand, within MMJJ_RS06755 at 1247.774 kb on - strand, within MMJJ_RS06755 at 1247.774 kb on - strand, within MMJJ_RS06755 at 1247.775 kb on + strand, within MMJJ_RS06755 at 1247.775 kb on + strand, within MMJJ_RS06755 at 1247.846 kb on + strand, within MMJJ_RS06755 at 1247.852 kb on + strand, within MMJJ_RS06755 at 1247.857 kb on - strand, within MMJJ_RS06755 at 1247.903 kb on - strand, within MMJJ_RS06755 at 1247.904 kb on + strand, within MMJJ_RS06755 at 1247.904 kb on + strand, within MMJJ_RS06755 at 1247.904 kb on + strand, within MMJJ_RS06755 at 1247.905 kb on - strand, within MMJJ_RS06755 at 1247.906 kb on + strand, within MMJJ_RS06755 at 1247.924 kb on - strand, within MMJJ_RS06755 at 1247.925 kb on + strand, within MMJJ_RS06755 at 1247.927 kb on - strand, within MMJJ_RS06755 at 1247.933 kb on - strand, within MMJJ_RS06755 at 1247.983 kb on - strand at 1247.983 kb on - strand at 1248.007 kb on - strand at 1248.027 kb on - strand at 1248.028 kb on + strand at 1248.031 kb on - strand at 1248.031 kb on - strand at 1248.031 kb on - strand at 1248.032 kb on + strand at 1248.088 kb on + strand at 1248.094 kb on + strand at 1248.143 kb on + strand at 1248.143 kb on + strand at 1248.159 kb on - strand at 1248.163 kb on - strand at 1248.182 kb on + strand at 1248.210 kb on - strand, within MMJJ_RS06760 at 1248.210 kb on - strand at 1248.211 kb on + strand, within MMJJ_RS06760 at 1248.214 kb on - strand, within MMJJ_RS06760 at 1248.217 kb on - strand, within MMJJ_RS06760 at 1248.302 kb on - strand, within MMJJ_RS06760 at 1248.390 kb on + strand, within MMJJ_RS06760 at 1248.439 kb on + strand, within MMJJ_RS06760 at 1248.456 kb on - strand, within MMJJ_RS06760 at 1248.463 kb on + strand, within MMJJ_RS06760 at 1248.506 kb on - strand, within MMJJ_RS06760 at 1248.511 kb on + strand, within MMJJ_RS06760 at 1248.511 kb on + strand, within MMJJ_RS06760 at 1248.511 kb on + strand, within MMJJ_RS06760 at 1249.006 kb on - strand, within MMJJ_RS06760
Per-strain Table
Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine remove 1,246,104 + MMJJ_RS06750 0.30 -0.2 1,246,185 + +0.8 1,246,425 - MMJJ_RS06750 0.55 -0.5 1,246,618 - MMJJ_RS06750 0.71 -1.5 1,246,723 - MMJJ_RS06750 0.79 -1.5 1,246,871 + +1.4 1,246,998 + -0.2 1,247,005 - -2.0 1,247,006 + -0.6 1,247,008 - -0.2 1,247,008 - +0.7 1,247,008 - -2.5 1,247,010 - -2.4 1,247,010 - +0.8 1,247,010 - -2.1 1,247,010 - -1.6 1,247,010 - +0.4 1,247,010 - +0.4 1,247,010 - -1.4 1,247,011 + +1.0 1,247,011 + +0.0 1,247,011 + +0.7 1,247,011 + -0.3 1,247,011 + -1.2 1,247,014 - +2.3 1,247,023 - -0.4 1,247,030 - -1.1 1,247,030 - -0.5 1,247,030 - +0.5 1,247,030 - -0.3 1,247,030 - -0.8 1,247,031 + -1.8 1,247,031 + -0.6 1,247,052 - +0.6 1,247,053 + +2.1 1,247,056 - -0.7 1,247,056 - -0.1 1,247,058 - +0.1 1,247,067 - -2.5 1,247,067 - -1.9 1,247,068 + +1.6 1,247,094 + -0.8 1,247,094 + +3.5 1,247,095 - +0.5 1,247,103 + -0.6 1,247,122 + -1.9 1,247,153 + -0.3 1,247,299 - MMJJ_RS06755 0.21 -3.1 1,247,299 - MMJJ_RS06755 0.21 -2.8 1,247,300 + MMJJ_RS06755 0.22 -1.4 1,247,300 + MMJJ_RS06755 0.22 +0.0 1,247,303 - MMJJ_RS06755 0.22 -0.6 1,247,303 - MMJJ_RS06755 0.22 -1.6 1,247,366 + MMJJ_RS06755 0.29 -0.8 1,247,402 + MMJJ_RS06755 0.32 -3.0 1,247,402 + MMJJ_RS06755 0.32 -1.4 1,247,403 - MMJJ_RS06755 0.32 -3.0 1,247,456 + MMJJ_RS06755 0.38 -1.3 1,247,480 + MMJJ_RS06755 0.41 -2.3 1,247,485 - MMJJ_RS06755 0.41 -2.0 1,247,591 - +0.0 1,247,591 - MMJJ_RS06755 0.53 -2.9 1,247,592 + MMJJ_RS06755 0.53 -1.7 1,247,598 + MMJJ_RS06755 0.53 -3.0 1,247,600 - MMJJ_RS06755 0.53 -4.1 1,247,626 - MMJJ_RS06755 0.56 -2.3 1,247,663 + MMJJ_RS06755 0.60 -2.7 1,247,663 + MMJJ_RS06755 0.60 -1.8 1,247,673 - MMJJ_RS06755 0.61 -1.1 1,247,673 - MMJJ_RS06755 0.61 -2.8 1,247,706 - MMJJ_RS06755 0.65 -1.9 1,247,715 - MMJJ_RS06755 0.66 -1.8 1,247,716 + MMJJ_RS06755 0.66 -2.0 1,247,760 - MMJJ_RS06755 0.71 -3.2 1,247,772 - MMJJ_RS06755 0.72 -2.2 1,247,772 - MMJJ_RS06755 0.72 -1.2 1,247,772 - MMJJ_RS06755 0.72 -0.4 1,247,772 - MMJJ_RS06755 0.72 -3.2 1,247,773 + MMJJ_RS06755 0.72 -2.4 1,247,773 + MMJJ_RS06755 0.72 +0.0 1,247,773 + MMJJ_RS06755 0.72 -3.0 1,247,773 + MMJJ_RS06755 0.72 -2.0 1,247,773 + MMJJ_RS06755 0.72 -0.7 1,247,773 + MMJJ_RS06755 0.72 -2.3 1,247,774 - MMJJ_RS06755 0.72 -1.3 1,247,774 - MMJJ_RS06755 0.72 -2.0 1,247,774 - MMJJ_RS06755 0.72 -0.8 1,247,775 + MMJJ_RS06755 0.72 -2.1 1,247,775 + MMJJ_RS06755 0.72 -1.7 1,247,846 + MMJJ_RS06755 0.80 -1.0 1,247,852 + MMJJ_RS06755 0.80 -3.8 1,247,857 - MMJJ_RS06755 0.81 -1.6 1,247,903 - MMJJ_RS06755 0.86 -0.6 1,247,904 + MMJJ_RS06755 0.86 -3.0 1,247,904 + MMJJ_RS06755 0.86 -2.6 1,247,904 + MMJJ_RS06755 0.86 -0.4 1,247,905 - MMJJ_RS06755 0.86 -1.3 1,247,906 + MMJJ_RS06755 0.86 -1.3 1,247,924 - MMJJ_RS06755 0.88 -2.8 1,247,925 + MMJJ_RS06755 0.88 -2.9 1,247,927 - MMJJ_RS06755 0.88 +0.4 1,247,933 - MMJJ_RS06755 0.89 -1.7 1,247,983 - -3.0 1,247,983 - -3.6 1,248,007 - -1.8 1,248,027 - -0.1 1,248,028 + -4.0 1,248,031 - -2.2 1,248,031 - -1.4 1,248,031 - -1.1 1,248,032 + -1.1 1,248,088 + +0.0 1,248,094 + -0.2 1,248,143 + +0.3 1,248,143 + -0.8 1,248,159 - -2.2 1,248,163 - -0.6 1,248,182 + -0.5 1,248,210 - MMJJ_RS06760 0.12 -0.2 1,248,210 - -0.2 1,248,211 + MMJJ_RS06760 0.12 -1.6 1,248,214 - MMJJ_RS06760 0.12 -0.3 1,248,217 - MMJJ_RS06760 0.12 +0.2 1,248,302 - MMJJ_RS06760 0.19 +0.8 1,248,390 + MMJJ_RS06760 0.25 -3.7 1,248,439 + MMJJ_RS06760 0.29 -1.0 1,248,456 - MMJJ_RS06760 0.30 -1.5 1,248,463 + MMJJ_RS06760 0.31 -2.2 1,248,506 - MMJJ_RS06760 0.34 -0.8 1,248,511 + MMJJ_RS06760 0.34 -1.1 1,248,511 + MMJJ_RS06760 0.34 +4.2 1,248,511 + MMJJ_RS06760 0.34 -1.5 1,249,006 - MMJJ_RS06760 0.71 +2.0
Or see this region's nucleotide sequence