Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06715

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS06710 and MMJJ_RS06715 are separated by 47 nucleotidesMMJJ_RS06715 and MMJJ_RS06720 are separated by 124 nucleotidesMMJJ_RS06720 and MMJJ_RS06725 are separated by 22 nucleotides MMJJ_RS06710: MMJJ_RS06710 - TldD/PmbA family protein, at 1,238,636 to 1,240,012 _RS06710 MMJJ_RS06715: MMJJ_RS06715 - lactaldehyde dehydrogenase, at 1,240,060 to 1,241,457 _RS06715 MMJJ_RS06720: MMJJ_RS06720 - mechanosensitive ion channel family protein, at 1,241,582 to 1,242,385 _RS06720 MMJJ_RS06725: MMJJ_RS06725 - MogA/MoaB family molybdenum cofactor biosynthesis protein, at 1,242,408 to 1,242,893 _RS06725 Position (kb) 1240 1241 1242Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1239.067 kb on + strand, within MMJJ_RS06710at 1239.067 kb on + strand, within MMJJ_RS06710at 1239.074 kb on - strand, within MMJJ_RS06710at 1239.112 kb on - strand, within MMJJ_RS06710at 1239.136 kb on + strand, within MMJJ_RS06710at 1239.173 kb on - strand, within MMJJ_RS06710at 1239.180 kb on + strand, within MMJJ_RS06710at 1239.285 kb on + strand, within MMJJ_RS06710at 1239.406 kb on - strand, within MMJJ_RS06710at 1239.437 kb on + strand, within MMJJ_RS06710at 1239.564 kb on - strand, within MMJJ_RS06710at 1239.682 kb on - strand, within MMJJ_RS06710at 1239.683 kb on + strand, within MMJJ_RS06710at 1239.683 kb on + strand, within MMJJ_RS06710at 1239.683 kb on + strand, within MMJJ_RS06710at 1239.730 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.734 kb on - strand, within MMJJ_RS06710at 1239.735 kb on + strand, within MMJJ_RS06710at 1239.735 kb on + strand, within MMJJ_RS06710at 1239.754 kb on - strand, within MMJJ_RS06710at 1239.755 kb on + strand, within MMJJ_RS06710at 1239.773 kb on - strand, within MMJJ_RS06710at 1239.812 kb on + strand, within MMJJ_RS06710at 1239.812 kb on + strand, within MMJJ_RS06710at 1239.839 kb on - strand, within MMJJ_RS06710at 1239.839 kb on - strand, within MMJJ_RS06710at 1239.840 kb on + strand, within MMJJ_RS06710at 1239.845 kb on + strand, within MMJJ_RS06710at 1239.851 kb on - strand, within MMJJ_RS06710at 1239.884 kb on - strandat 1239.907 kb on - strandat 1239.946 kb on + strandat 1239.986 kb on - strandat 1240.030 kb on + strandat 1240.034 kb on + strandat 1240.037 kb on + strandat 1240.041 kb on - strandat 1240.042 kb on + strandat 1240.042 kb on + strandat 1240.042 kb on + strandat 1240.061 kb on - strandat 1240.076 kb on + strandat 1240.087 kb on - strandat 1240.111 kb on + strandat 1240.112 kb on - strandat 1240.113 kb on + strandat 1240.194 kb on - strandat 1240.211 kb on - strand, within MMJJ_RS06715at 1240.242 kb on - strand, within MMJJ_RS06715at 1240.247 kb on + strand, within MMJJ_RS06715at 1240.251 kb on - strand, within MMJJ_RS06715at 1240.252 kb on + strand, within MMJJ_RS06715at 1240.390 kb on + strand, within MMJJ_RS06715at 1240.392 kb on - strand, within MMJJ_RS06715at 1240.438 kb on - strand, within MMJJ_RS06715at 1240.438 kb on - strand, within MMJJ_RS06715at 1240.489 kb on - strand, within MMJJ_RS06715at 1240.509 kb on - strand, within MMJJ_RS06715at 1240.509 kb on - strand, within MMJJ_RS06715at 1240.509 kb on - strand, within MMJJ_RS06715at 1240.510 kb on + strand, within MMJJ_RS06715at 1240.510 kb on + strand, within MMJJ_RS06715at 1240.575 kb on - strand, within MMJJ_RS06715at 1240.580 kb on - strand, within MMJJ_RS06715at 1240.580 kb on - strand, within MMJJ_RS06715at 1240.580 kb on - strand, within MMJJ_RS06715at 1240.580 kb on - strand, within MMJJ_RS06715at 1240.618 kb on - strand, within MMJJ_RS06715at 1240.618 kb on - strand, within MMJJ_RS06715at 1240.635 kb on - strand, within MMJJ_RS06715at 1240.693 kb on + strand, within MMJJ_RS06715at 1240.725 kb on - strand, within MMJJ_RS06715at 1240.774 kb on - strand, within MMJJ_RS06715at 1240.820 kb on + strand, within MMJJ_RS06715at 1240.937 kb on - strand, within MMJJ_RS06715at 1240.937 kb on - strand, within MMJJ_RS06715at 1240.937 kb on - strand, within MMJJ_RS06715at 1240.937 kb on - strand, within MMJJ_RS06715at 1240.937 kb on - strand, within MMJJ_RS06715at 1240.938 kb on + strand, within MMJJ_RS06715at 1240.938 kb on + strand, within MMJJ_RS06715at 1240.939 kb on - strand, within MMJJ_RS06715at 1240.940 kb on + strand, within MMJJ_RS06715at 1240.975 kb on - strand, within MMJJ_RS06715at 1240.976 kb on + strand, within MMJJ_RS06715at 1240.977 kb on - strand, within MMJJ_RS06715at 1241.014 kb on + strand, within MMJJ_RS06715at 1241.090 kb on + strand, within MMJJ_RS06715at 1241.164 kb on - strand, within MMJJ_RS06715at 1241.165 kb on + strand, within MMJJ_RS06715at 1241.183 kb on + strand, within MMJJ_RS06715at 1241.255 kb on + strand, within MMJJ_RS06715at 1241.279 kb on + strand, within MMJJ_RS06715at 1241.353 kb on + strandat 1241.402 kb on - strandat 1241.403 kb on + strandat 1241.432 kb on + strandat 1241.433 kb on - strandat 1241.434 kb on + strandat 1241.485 kb on - strandat 1241.488 kb on - strandat 1241.489 kb on + strandat 1241.489 kb on + strandat 1241.491 kb on - strandat 1241.503 kb on - strandat 1241.503 kb on - strandat 1241.504 kb on + strandat 1241.504 kb on + strandat 1241.506 kb on - strandat 1241.526 kb on - strandat 1241.526 kb on - strandat 1241.527 kb on + strandat 1241.527 kb on + strandat 1241.527 kb on + strandat 1241.527 kb on + strandat 1241.529 kb on - strandat 1241.529 kb on - strandat 1241.531 kb on - strandat 1241.531 kb on - strandat 1241.532 kb on + strandat 1241.532 kb on + strandat 1241.556 kb on - strandat 1241.614 kb on - strandat 1241.617 kb on + strandat 1241.617 kb on + strandat 1241.628 kb on - strandat 1241.634 kb on - strandat 1241.635 kb on + strandat 1241.635 kb on + strandat 1241.658 kb on - strandat 1241.664 kb on + strand, within MMJJ_RS06720at 1241.687 kb on + strand, within MMJJ_RS06720at 1241.690 kb on + strandat 1241.734 kb on + strand, within MMJJ_RS06720at 1241.734 kb on + strand, within MMJJ_RS06720at 1241.754 kb on - strand, within MMJJ_RS06720at 1241.754 kb on - strand, within MMJJ_RS06720at 1241.755 kb on + strand, within MMJJ_RS06720at 1241.755 kb on + strand, within MMJJ_RS06720at 1241.771 kb on - strand, within MMJJ_RS06720at 1241.771 kb on - strand, within MMJJ_RS06720at 1241.771 kb on - strand, within MMJJ_RS06720at 1241.772 kb on + strand, within MMJJ_RS06720at 1241.776 kb on + strand, within MMJJ_RS06720at 1241.776 kb on + strand, within MMJJ_RS06720at 1241.781 kb on - strand, within MMJJ_RS06720at 1241.782 kb on + strand, within MMJJ_RS06720at 1241.785 kb on + strand, within MMJJ_RS06720at 1241.827 kb on + strand, within MMJJ_RS06720at 1241.888 kb on + strand, within MMJJ_RS06720at 1241.888 kb on + strand, within MMJJ_RS06720at 1241.921 kb on + strand, within MMJJ_RS06720at 1241.955 kb on - strand, within MMJJ_RS06720at 1241.955 kb on - strand, within MMJJ_RS06720at 1241.956 kb on + strand, within MMJJ_RS06720at 1242.020 kb on + strand, within MMJJ_RS06720at 1242.048 kb on - strand, within MMJJ_RS06720at 1242.048 kb on - strand, within MMJJ_RS06720at 1242.049 kb on + strand, within MMJJ_RS06720at 1242.064 kb on - strand, within MMJJ_RS06720at 1242.090 kb on - strand, within MMJJ_RS06720at 1242.122 kb on - strand, within MMJJ_RS06720at 1242.167 kb on + strand, within MMJJ_RS06720at 1242.187 kb on + strand, within MMJJ_RS06720at 1242.211 kb on + strand, within MMJJ_RS06720at 1242.216 kb on - strand, within MMJJ_RS06720at 1242.278 kb on - strand, within MMJJ_RS06720at 1242.302 kb on + strand, within MMJJ_RS06720at 1242.312 kb on - strandat 1242.366 kb on - strandat 1242.366 kb on - strandat 1242.366 kb on - strandat 1242.367 kb on + strandat 1242.367 kb on + strandat 1242.367 kb on + strandat 1242.367 kb on + strandat 1242.367 kb on + strandat 1242.367 kb on + strandat 1242.370 kb on - strandat 1242.380 kb on - strandat 1242.398 kb on + strandat 1242.414 kb on - strandat 1242.415 kb on + strandat 1242.446 kb on - strandat 1242.446 kb on - strandat 1242.447 kb on + strandat 1242.447 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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1,239,067 + MMJJ_RS06710 0.31 +0.8
1,239,067 + MMJJ_RS06710 0.31 -0.6
1,239,074 - MMJJ_RS06710 0.32 -0.5
1,239,112 - MMJJ_RS06710 0.35 -1.0
1,239,136 + MMJJ_RS06710 0.36 +2.8
1,239,173 - MMJJ_RS06710 0.39 +0.5
1,239,180 + MMJJ_RS06710 0.40 -0.3
1,239,285 + MMJJ_RS06710 0.47 -1.3
1,239,406 - MMJJ_RS06710 0.56 -0.9
1,239,437 + MMJJ_RS06710 0.58 -0.6
1,239,564 - MMJJ_RS06710 0.67 +1.5
1,239,682 - MMJJ_RS06710 0.76 +1.7
1,239,683 + MMJJ_RS06710 0.76 +3.1
1,239,683 + MMJJ_RS06710 0.76 +1.4
1,239,683 + MMJJ_RS06710 0.76 +3.8
1,239,730 - MMJJ_RS06710 0.79 +3.3
1,239,734 - MMJJ_RS06710 0.80 +2.7
1,239,734 - MMJJ_RS06710 0.80 +0.1
1,239,734 - MMJJ_RS06710 0.80 +0.1
1,239,734 - MMJJ_RS06710 0.80 -0.5
1,239,734 - MMJJ_RS06710 0.80 +1.1
1,239,734 - MMJJ_RS06710 0.80 -3.0
1,239,734 - MMJJ_RS06710 0.80 +2.6
1,239,734 - MMJJ_RS06710 0.80 +1.4
1,239,734 - MMJJ_RS06710 0.80 +1.5
1,239,735 + MMJJ_RS06710 0.80 +2.1
1,239,735 + MMJJ_RS06710 0.80 -3.7
1,239,754 - MMJJ_RS06710 0.81 +1.0
1,239,755 + MMJJ_RS06710 0.81 +1.8
1,239,773 - MMJJ_RS06710 0.83 +2.3
1,239,812 + MMJJ_RS06710 0.85 -0.4
1,239,812 + MMJJ_RS06710 0.85 +1.5
1,239,839 - MMJJ_RS06710 0.87 -1.2
1,239,839 - MMJJ_RS06710 0.87 +2.4
1,239,840 + MMJJ_RS06710 0.87 +0.6
1,239,845 + MMJJ_RS06710 0.88 -0.3
1,239,851 - MMJJ_RS06710 0.88 +2.9
1,239,884 - +0.1
1,239,907 - +1.2
1,239,946 + +2.2
1,239,986 - +1.1
1,240,030 + -2.0
1,240,034 + +3.2
1,240,037 + -0.4
1,240,041 - +0.4
1,240,042 + +0.3
1,240,042 + -1.5
1,240,042 + +0.8
1,240,061 - +4.2
1,240,076 + -2.9
1,240,087 - -3.2
1,240,111 + -2.1
1,240,112 - -2.5
1,240,113 + -1.5
1,240,194 - -1.2
1,240,211 - MMJJ_RS06715 0.11 -3.8
1,240,242 - MMJJ_RS06715 0.13 -1.8
1,240,247 + MMJJ_RS06715 0.13 -3.5
1,240,251 - MMJJ_RS06715 0.14 -1.8
1,240,252 + MMJJ_RS06715 0.14 -2.2
1,240,390 + MMJJ_RS06715 0.24 -0.5
1,240,392 - MMJJ_RS06715 0.24 -1.2
1,240,438 - MMJJ_RS06715 0.27 -2.4
1,240,438 - MMJJ_RS06715 0.27 +0.2
1,240,489 - MMJJ_RS06715 0.31 -1.2
1,240,509 - MMJJ_RS06715 0.32 -1.6
1,240,509 - MMJJ_RS06715 0.32 -0.6
1,240,509 - MMJJ_RS06715 0.32 -2.4
1,240,510 + MMJJ_RS06715 0.32 -3.8
1,240,510 + MMJJ_RS06715 0.32 -2.7
1,240,575 - MMJJ_RS06715 0.37 -2.0
1,240,580 - MMJJ_RS06715 0.37 -2.3
1,240,580 - MMJJ_RS06715 0.37 -1.0
1,240,580 - MMJJ_RS06715 0.37 -0.2
1,240,580 - MMJJ_RS06715 0.37 -2.2
1,240,618 - MMJJ_RS06715 0.40 -3.4
1,240,618 - MMJJ_RS06715 0.40 -0.3
1,240,635 - MMJJ_RS06715 0.41 -1.0
1,240,693 + MMJJ_RS06715 0.45 -0.3
1,240,725 - MMJJ_RS06715 0.48 -2.9
1,240,774 - MMJJ_RS06715 0.51 -2.4
1,240,820 + MMJJ_RS06715 0.54 -1.4
1,240,937 - MMJJ_RS06715 0.63 -2.3
1,240,937 - MMJJ_RS06715 0.63 -1.8
1,240,937 - MMJJ_RS06715 0.63 -0.0
1,240,937 - MMJJ_RS06715 0.63 -0.7
1,240,937 - MMJJ_RS06715 0.63 -1.6
1,240,938 + MMJJ_RS06715 0.63 -1.0
1,240,938 + MMJJ_RS06715 0.63 -1.8
1,240,939 - MMJJ_RS06715 0.63 -0.9
1,240,940 + MMJJ_RS06715 0.63 -1.0
1,240,975 - MMJJ_RS06715 0.65 -0.1
1,240,976 + MMJJ_RS06715 0.66 -0.6
1,240,977 - MMJJ_RS06715 0.66 -1.7
1,241,014 + MMJJ_RS06715 0.68 -1.3
1,241,090 + MMJJ_RS06715 0.74 -1.4
1,241,164 - MMJJ_RS06715 0.79 -2.9
1,241,165 + MMJJ_RS06715 0.79 -0.3
1,241,183 + MMJJ_RS06715 0.80 -2.3
1,241,255 + MMJJ_RS06715 0.85 -2.1
1,241,279 + MMJJ_RS06715 0.87 +0.8
1,241,353 + -0.8
1,241,402 - -1.1
1,241,403 + -0.5
1,241,432 + -1.3
1,241,433 - -2.3
1,241,434 + -0.4
1,241,485 - +0.4
1,241,488 - +0.8
1,241,489 + -0.3
1,241,489 + -1.9
1,241,491 - -2.3
1,241,503 - +2.5
1,241,503 - +2.1
1,241,504 + -0.2
1,241,504 + -0.5
1,241,506 - -0.0
1,241,526 - -2.0
1,241,526 - +2.1
1,241,527 + +0.2
1,241,527 + +0.9
1,241,527 + +1.4
1,241,527 + +0.7
1,241,529 - +1.2
1,241,529 - -0.3
1,241,531 - -1.1
1,241,531 - +3.7
1,241,532 + +2.5
1,241,532 + -0.4
1,241,556 - +2.8
1,241,614 - +3.9
1,241,617 + -1.3
1,241,617 + -2.1
1,241,628 - +1.6
1,241,634 - -2.4
1,241,635 + -0.9
1,241,635 + +3.0
1,241,658 - +1.5
1,241,664 + MMJJ_RS06720 0.10 -1.5
1,241,687 + MMJJ_RS06720 0.13 -3.1
1,241,690 + +0.4
1,241,734 + MMJJ_RS06720 0.19 +0.7
1,241,734 + MMJJ_RS06720 0.19 -2.3
1,241,754 - MMJJ_RS06720 0.21 -2.1
1,241,754 - MMJJ_RS06720 0.21 +2.8
1,241,755 + MMJJ_RS06720 0.22 -1.2
1,241,755 + MMJJ_RS06720 0.22 +4.1
1,241,771 - MMJJ_RS06720 0.24 -2.6
1,241,771 - MMJJ_RS06720 0.24 +0.6
1,241,771 - MMJJ_RS06720 0.24 +2.3
1,241,772 + MMJJ_RS06720 0.24 -3.8
1,241,776 + MMJJ_RS06720 0.24 -1.0
1,241,776 + MMJJ_RS06720 0.24 +3.2
1,241,781 - MMJJ_RS06720 0.25 +1.5
1,241,782 + MMJJ_RS06720 0.25 +0.4
1,241,785 + MMJJ_RS06720 0.25 +0.2
1,241,827 + MMJJ_RS06720 0.30 +0.3
1,241,888 + MMJJ_RS06720 0.38 +0.6
1,241,888 + MMJJ_RS06720 0.38 -0.0
1,241,921 + MMJJ_RS06720 0.42 +2.1
1,241,955 - MMJJ_RS06720 0.46 +1.2
1,241,955 - MMJJ_RS06720 0.46 +1.7
1,241,956 + MMJJ_RS06720 0.47 +4.0
1,242,020 + MMJJ_RS06720 0.54 +0.0
1,242,048 - MMJJ_RS06720 0.58 -0.2
1,242,048 - MMJJ_RS06720 0.58 +0.7
1,242,049 + MMJJ_RS06720 0.58 -1.0
1,242,064 - MMJJ_RS06720 0.60 +0.5
1,242,090 - MMJJ_RS06720 0.63 +0.5
1,242,122 - MMJJ_RS06720 0.67 +1.4
1,242,167 + MMJJ_RS06720 0.73 +2.4
1,242,187 + MMJJ_RS06720 0.75 +1.1
1,242,211 + MMJJ_RS06720 0.78 -3.7
1,242,216 - MMJJ_RS06720 0.79 +3.9
1,242,278 - MMJJ_RS06720 0.87 -1.8
1,242,302 + MMJJ_RS06720 0.90 +1.6
1,242,312 - +0.1
1,242,366 - +3.6
1,242,366 - +1.0
1,242,366 - -1.5
1,242,367 + +3.9
1,242,367 + -1.5
1,242,367 + -0.3
1,242,367 + -1.6
1,242,367 + -1.2
1,242,367 + -2.0
1,242,370 - +1.2
1,242,380 - +0.9
1,242,398 + +0.1
1,242,414 - +1.6
1,242,415 + -2.9
1,242,446 - -2.0
1,242,446 - -3.6
1,242,447 + -1.6
1,242,447 + -2.0

Or see this region's nucleotide sequence