Experiment: Formate N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS06710 and MMJJ_RS06715 are separated by 47 nucleotides MMJJ_RS06715 and MMJJ_RS06720 are separated by 124 nucleotides MMJJ_RS06720 and MMJJ_RS06725 are separated by 22 nucleotides
MMJJ_RS06710: MMJJ_RS06710 - TldD/PmbA family protein, at 1,238,636 to 1,240,012
_RS06710
MMJJ_RS06715: MMJJ_RS06715 - lactaldehyde dehydrogenase, at 1,240,060 to 1,241,457
_RS06715
MMJJ_RS06720: MMJJ_RS06720 - mechanosensitive ion channel family protein, at 1,241,582 to 1,242,385
_RS06720
MMJJ_RS06725: MMJJ_RS06725 - MogA/MoaB family molybdenum cofactor biosynthesis protein, at 1,242,408 to 1,242,893
_RS06725
Position (kb)
1240
1241
1242 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1239.067 kb on + strand, within MMJJ_RS06710 at 1239.067 kb on + strand, within MMJJ_RS06710 at 1239.074 kb on - strand, within MMJJ_RS06710 at 1239.112 kb on - strand, within MMJJ_RS06710 at 1239.136 kb on + strand, within MMJJ_RS06710 at 1239.173 kb on - strand, within MMJJ_RS06710 at 1239.180 kb on + strand, within MMJJ_RS06710 at 1239.285 kb on + strand, within MMJJ_RS06710 at 1239.406 kb on - strand, within MMJJ_RS06710 at 1239.437 kb on + strand, within MMJJ_RS06710 at 1239.564 kb on - strand, within MMJJ_RS06710 at 1239.682 kb on - strand, within MMJJ_RS06710 at 1239.683 kb on + strand, within MMJJ_RS06710 at 1239.683 kb on + strand, within MMJJ_RS06710 at 1239.683 kb on + strand, within MMJJ_RS06710 at 1239.730 kb on - strand, within MMJJ_RS06710 at 1239.734 kb on - strand, within MMJJ_RS06710 at 1239.734 kb on - strand, within MMJJ_RS06710 at 1239.734 kb on - strand, within MMJJ_RS06710 at 1239.734 kb on - strand, within MMJJ_RS06710 at 1239.734 kb on - strand, within MMJJ_RS06710 at 1239.734 kb on - strand, within MMJJ_RS06710 at 1239.734 kb on - strand, within MMJJ_RS06710 at 1239.734 kb on - strand, within MMJJ_RS06710 at 1239.734 kb on - strand, within MMJJ_RS06710 at 1239.735 kb on + strand, within MMJJ_RS06710 at 1239.735 kb on + strand, within MMJJ_RS06710 at 1239.754 kb on - strand, within MMJJ_RS06710 at 1239.755 kb on + strand, within MMJJ_RS06710 at 1239.773 kb on - strand, within MMJJ_RS06710 at 1239.812 kb on + strand, within MMJJ_RS06710 at 1239.812 kb on + strand, within MMJJ_RS06710 at 1239.839 kb on - strand, within MMJJ_RS06710 at 1239.839 kb on - strand, within MMJJ_RS06710 at 1239.840 kb on + strand, within MMJJ_RS06710 at 1239.845 kb on + strand, within MMJJ_RS06710 at 1239.851 kb on - strand, within MMJJ_RS06710 at 1239.884 kb on - strand at 1239.907 kb on - strand at 1239.946 kb on + strand at 1239.986 kb on - strand at 1240.030 kb on + strand at 1240.034 kb on + strand at 1240.037 kb on + strand at 1240.041 kb on - strand at 1240.042 kb on + strand at 1240.042 kb on + strand at 1240.042 kb on + strand at 1240.061 kb on - strand at 1240.076 kb on + strand at 1240.087 kb on - strand at 1240.111 kb on + strand at 1240.112 kb on - strand at 1240.113 kb on + strand at 1240.194 kb on - strand at 1240.211 kb on - strand, within MMJJ_RS06715 at 1240.242 kb on - strand, within MMJJ_RS06715 at 1240.247 kb on + strand, within MMJJ_RS06715 at 1240.251 kb on - strand, within MMJJ_RS06715 at 1240.252 kb on + strand, within MMJJ_RS06715 at 1240.390 kb on + strand, within MMJJ_RS06715 at 1240.392 kb on - strand, within MMJJ_RS06715 at 1240.438 kb on - strand, within MMJJ_RS06715 at 1240.438 kb on - strand, within MMJJ_RS06715 at 1240.489 kb on - strand, within MMJJ_RS06715 at 1240.509 kb on - strand, within MMJJ_RS06715 at 1240.509 kb on - strand, within MMJJ_RS06715 at 1240.509 kb on - strand, within MMJJ_RS06715 at 1240.510 kb on + strand, within MMJJ_RS06715 at 1240.510 kb on + strand, within MMJJ_RS06715 at 1240.575 kb on - strand, within MMJJ_RS06715 at 1240.580 kb on - strand, within MMJJ_RS06715 at 1240.580 kb on - strand, within MMJJ_RS06715 at 1240.580 kb on - strand, within MMJJ_RS06715 at 1240.580 kb on - strand, within MMJJ_RS06715 at 1240.618 kb on - strand, within MMJJ_RS06715 at 1240.618 kb on - strand, within MMJJ_RS06715 at 1240.635 kb on - strand, within MMJJ_RS06715 at 1240.693 kb on + strand, within MMJJ_RS06715 at 1240.725 kb on - strand, within MMJJ_RS06715 at 1240.774 kb on - strand, within MMJJ_RS06715 at 1240.820 kb on + strand, within MMJJ_RS06715 at 1240.937 kb on - strand, within MMJJ_RS06715 at 1240.937 kb on - strand, within MMJJ_RS06715 at 1240.937 kb on - strand, within MMJJ_RS06715 at 1240.937 kb on - strand, within MMJJ_RS06715 at 1240.937 kb on - strand, within MMJJ_RS06715 at 1240.938 kb on + strand, within MMJJ_RS06715 at 1240.938 kb on + strand, within MMJJ_RS06715 at 1240.939 kb on - strand, within MMJJ_RS06715 at 1240.940 kb on + strand, within MMJJ_RS06715 at 1240.975 kb on - strand, within MMJJ_RS06715 at 1240.976 kb on + strand, within MMJJ_RS06715 at 1240.977 kb on - strand, within MMJJ_RS06715 at 1241.014 kb on + strand, within MMJJ_RS06715 at 1241.090 kb on + strand, within MMJJ_RS06715 at 1241.164 kb on - strand, within MMJJ_RS06715 at 1241.165 kb on + strand, within MMJJ_RS06715 at 1241.183 kb on + strand, within MMJJ_RS06715 at 1241.255 kb on + strand, within MMJJ_RS06715 at 1241.279 kb on + strand, within MMJJ_RS06715 at 1241.353 kb on + strand at 1241.402 kb on - strand at 1241.403 kb on + strand at 1241.432 kb on + strand at 1241.433 kb on - strand at 1241.434 kb on + strand at 1241.485 kb on - strand at 1241.488 kb on - strand at 1241.489 kb on + strand at 1241.489 kb on + strand at 1241.491 kb on - strand at 1241.503 kb on - strand at 1241.503 kb on - strand at 1241.504 kb on + strand at 1241.504 kb on + strand at 1241.506 kb on - strand at 1241.526 kb on - strand at 1241.526 kb on - strand at 1241.527 kb on + strand at 1241.527 kb on + strand at 1241.527 kb on + strand at 1241.527 kb on + strand at 1241.529 kb on - strand at 1241.529 kb on - strand at 1241.531 kb on - strand at 1241.531 kb on - strand at 1241.532 kb on + strand at 1241.532 kb on + strand at 1241.556 kb on - strand at 1241.614 kb on - strand at 1241.617 kb on + strand at 1241.617 kb on + strand at 1241.628 kb on - strand at 1241.634 kb on - strand at 1241.635 kb on + strand at 1241.635 kb on + strand at 1241.658 kb on - strand at 1241.664 kb on + strand, within MMJJ_RS06720 at 1241.687 kb on + strand, within MMJJ_RS06720 at 1241.690 kb on + strand at 1241.734 kb on + strand, within MMJJ_RS06720 at 1241.734 kb on + strand, within MMJJ_RS06720 at 1241.754 kb on - strand, within MMJJ_RS06720 at 1241.754 kb on - strand, within MMJJ_RS06720 at 1241.755 kb on + strand, within MMJJ_RS06720 at 1241.755 kb on + strand, within MMJJ_RS06720 at 1241.771 kb on - strand, within MMJJ_RS06720 at 1241.771 kb on - strand, within MMJJ_RS06720 at 1241.771 kb on - strand, within MMJJ_RS06720 at 1241.772 kb on + strand, within MMJJ_RS06720 at 1241.776 kb on + strand, within MMJJ_RS06720 at 1241.776 kb on + strand, within MMJJ_RS06720 at 1241.781 kb on - strand, within MMJJ_RS06720 at 1241.782 kb on + strand, within MMJJ_RS06720 at 1241.785 kb on + strand, within MMJJ_RS06720 at 1241.827 kb on + strand, within MMJJ_RS06720 at 1241.888 kb on + strand, within MMJJ_RS06720 at 1241.888 kb on + strand, within MMJJ_RS06720 at 1241.921 kb on + strand, within MMJJ_RS06720 at 1241.955 kb on - strand, within MMJJ_RS06720 at 1241.955 kb on - strand, within MMJJ_RS06720 at 1241.956 kb on + strand, within MMJJ_RS06720 at 1242.020 kb on + strand, within MMJJ_RS06720 at 1242.048 kb on - strand, within MMJJ_RS06720 at 1242.048 kb on - strand, within MMJJ_RS06720 at 1242.049 kb on + strand, within MMJJ_RS06720 at 1242.064 kb on - strand, within MMJJ_RS06720 at 1242.090 kb on - strand, within MMJJ_RS06720 at 1242.122 kb on - strand, within MMJJ_RS06720 at 1242.167 kb on + strand, within MMJJ_RS06720 at 1242.187 kb on + strand, within MMJJ_RS06720 at 1242.211 kb on + strand, within MMJJ_RS06720 at 1242.216 kb on - strand, within MMJJ_RS06720 at 1242.278 kb on - strand, within MMJJ_RS06720 at 1242.302 kb on + strand, within MMJJ_RS06720 at 1242.312 kb on - strand at 1242.366 kb on - strand at 1242.366 kb on - strand at 1242.366 kb on - strand at 1242.367 kb on + strand at 1242.367 kb on + strand at 1242.367 kb on + strand at 1242.367 kb on + strand at 1242.367 kb on + strand at 1242.367 kb on + strand at 1242.370 kb on - strand at 1242.380 kb on - strand at 1242.398 kb on + strand at 1242.414 kb on - strand at 1242.415 kb on + strand at 1242.446 kb on - strand at 1242.446 kb on - strand at 1242.447 kb on + strand at 1242.447 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine remove 1,239,067 + MMJJ_RS06710 0.31 +0.8 1,239,067 + MMJJ_RS06710 0.31 -0.6 1,239,074 - MMJJ_RS06710 0.32 -0.5 1,239,112 - MMJJ_RS06710 0.35 -1.0 1,239,136 + MMJJ_RS06710 0.36 +2.8 1,239,173 - MMJJ_RS06710 0.39 +0.5 1,239,180 + MMJJ_RS06710 0.40 -0.3 1,239,285 + MMJJ_RS06710 0.47 -1.3 1,239,406 - MMJJ_RS06710 0.56 -0.9 1,239,437 + MMJJ_RS06710 0.58 -0.6 1,239,564 - MMJJ_RS06710 0.67 +1.5 1,239,682 - MMJJ_RS06710 0.76 +1.7 1,239,683 + MMJJ_RS06710 0.76 +3.1 1,239,683 + MMJJ_RS06710 0.76 +1.4 1,239,683 + MMJJ_RS06710 0.76 +3.8 1,239,730 - MMJJ_RS06710 0.79 +3.3 1,239,734 - MMJJ_RS06710 0.80 +2.7 1,239,734 - MMJJ_RS06710 0.80 +0.1 1,239,734 - MMJJ_RS06710 0.80 +0.1 1,239,734 - MMJJ_RS06710 0.80 -0.5 1,239,734 - MMJJ_RS06710 0.80 +1.1 1,239,734 - MMJJ_RS06710 0.80 -3.0 1,239,734 - MMJJ_RS06710 0.80 +2.6 1,239,734 - MMJJ_RS06710 0.80 +1.4 1,239,734 - MMJJ_RS06710 0.80 +1.5 1,239,735 + MMJJ_RS06710 0.80 +2.1 1,239,735 + MMJJ_RS06710 0.80 -3.7 1,239,754 - MMJJ_RS06710 0.81 +1.0 1,239,755 + MMJJ_RS06710 0.81 +1.8 1,239,773 - MMJJ_RS06710 0.83 +2.3 1,239,812 + MMJJ_RS06710 0.85 -0.4 1,239,812 + MMJJ_RS06710 0.85 +1.5 1,239,839 - MMJJ_RS06710 0.87 -1.2 1,239,839 - MMJJ_RS06710 0.87 +2.4 1,239,840 + MMJJ_RS06710 0.87 +0.6 1,239,845 + MMJJ_RS06710 0.88 -0.3 1,239,851 - MMJJ_RS06710 0.88 +2.9 1,239,884 - +0.1 1,239,907 - +1.2 1,239,946 + +2.2 1,239,986 - +1.1 1,240,030 + -2.0 1,240,034 + +3.2 1,240,037 + -0.4 1,240,041 - +0.4 1,240,042 + +0.3 1,240,042 + -1.5 1,240,042 + +0.8 1,240,061 - +4.2 1,240,076 + -2.9 1,240,087 - -3.2 1,240,111 + -2.1 1,240,112 - -2.5 1,240,113 + -1.5 1,240,194 - -1.2 1,240,211 - MMJJ_RS06715 0.11 -3.8 1,240,242 - MMJJ_RS06715 0.13 -1.8 1,240,247 + MMJJ_RS06715 0.13 -3.5 1,240,251 - MMJJ_RS06715 0.14 -1.8 1,240,252 + MMJJ_RS06715 0.14 -2.2 1,240,390 + MMJJ_RS06715 0.24 -0.5 1,240,392 - MMJJ_RS06715 0.24 -1.2 1,240,438 - MMJJ_RS06715 0.27 -2.4 1,240,438 - MMJJ_RS06715 0.27 +0.2 1,240,489 - MMJJ_RS06715 0.31 -1.2 1,240,509 - MMJJ_RS06715 0.32 -1.6 1,240,509 - MMJJ_RS06715 0.32 -0.6 1,240,509 - MMJJ_RS06715 0.32 -2.4 1,240,510 + MMJJ_RS06715 0.32 -3.8 1,240,510 + MMJJ_RS06715 0.32 -2.7 1,240,575 - MMJJ_RS06715 0.37 -2.0 1,240,580 - MMJJ_RS06715 0.37 -2.3 1,240,580 - MMJJ_RS06715 0.37 -1.0 1,240,580 - MMJJ_RS06715 0.37 -0.2 1,240,580 - MMJJ_RS06715 0.37 -2.2 1,240,618 - MMJJ_RS06715 0.40 -3.4 1,240,618 - MMJJ_RS06715 0.40 -0.3 1,240,635 - MMJJ_RS06715 0.41 -1.0 1,240,693 + MMJJ_RS06715 0.45 -0.3 1,240,725 - MMJJ_RS06715 0.48 -2.9 1,240,774 - MMJJ_RS06715 0.51 -2.4 1,240,820 + MMJJ_RS06715 0.54 -1.4 1,240,937 - MMJJ_RS06715 0.63 -2.3 1,240,937 - MMJJ_RS06715 0.63 -1.8 1,240,937 - MMJJ_RS06715 0.63 -0.0 1,240,937 - MMJJ_RS06715 0.63 -0.7 1,240,937 - MMJJ_RS06715 0.63 -1.6 1,240,938 + MMJJ_RS06715 0.63 -1.0 1,240,938 + MMJJ_RS06715 0.63 -1.8 1,240,939 - MMJJ_RS06715 0.63 -0.9 1,240,940 + MMJJ_RS06715 0.63 -1.0 1,240,975 - MMJJ_RS06715 0.65 -0.1 1,240,976 + MMJJ_RS06715 0.66 -0.6 1,240,977 - MMJJ_RS06715 0.66 -1.7 1,241,014 + MMJJ_RS06715 0.68 -1.3 1,241,090 + MMJJ_RS06715 0.74 -1.4 1,241,164 - MMJJ_RS06715 0.79 -2.9 1,241,165 + MMJJ_RS06715 0.79 -0.3 1,241,183 + MMJJ_RS06715 0.80 -2.3 1,241,255 + MMJJ_RS06715 0.85 -2.1 1,241,279 + MMJJ_RS06715 0.87 +0.8 1,241,353 + -0.8 1,241,402 - -1.1 1,241,403 + -0.5 1,241,432 + -1.3 1,241,433 - -2.3 1,241,434 + -0.4 1,241,485 - +0.4 1,241,488 - +0.8 1,241,489 + -0.3 1,241,489 + -1.9 1,241,491 - -2.3 1,241,503 - +2.5 1,241,503 - +2.1 1,241,504 + -0.2 1,241,504 + -0.5 1,241,506 - -0.0 1,241,526 - -2.0 1,241,526 - +2.1 1,241,527 + +0.2 1,241,527 + +0.9 1,241,527 + +1.4 1,241,527 + +0.7 1,241,529 - +1.2 1,241,529 - -0.3 1,241,531 - -1.1 1,241,531 - +3.7 1,241,532 + +2.5 1,241,532 + -0.4 1,241,556 - +2.8 1,241,614 - +3.9 1,241,617 + -1.3 1,241,617 + -2.1 1,241,628 - +1.6 1,241,634 - -2.4 1,241,635 + -0.9 1,241,635 + +3.0 1,241,658 - +1.5 1,241,664 + MMJJ_RS06720 0.10 -1.5 1,241,687 + MMJJ_RS06720 0.13 -3.1 1,241,690 + +0.4 1,241,734 + MMJJ_RS06720 0.19 +0.7 1,241,734 + MMJJ_RS06720 0.19 -2.3 1,241,754 - MMJJ_RS06720 0.21 -2.1 1,241,754 - MMJJ_RS06720 0.21 +2.8 1,241,755 + MMJJ_RS06720 0.22 -1.2 1,241,755 + MMJJ_RS06720 0.22 +4.1 1,241,771 - MMJJ_RS06720 0.24 -2.6 1,241,771 - MMJJ_RS06720 0.24 +0.6 1,241,771 - MMJJ_RS06720 0.24 +2.3 1,241,772 + MMJJ_RS06720 0.24 -3.8 1,241,776 + MMJJ_RS06720 0.24 -1.0 1,241,776 + MMJJ_RS06720 0.24 +3.2 1,241,781 - MMJJ_RS06720 0.25 +1.5 1,241,782 + MMJJ_RS06720 0.25 +0.4 1,241,785 + MMJJ_RS06720 0.25 +0.2 1,241,827 + MMJJ_RS06720 0.30 +0.3 1,241,888 + MMJJ_RS06720 0.38 +0.6 1,241,888 + MMJJ_RS06720 0.38 -0.0 1,241,921 + MMJJ_RS06720 0.42 +2.1 1,241,955 - MMJJ_RS06720 0.46 +1.2 1,241,955 - MMJJ_RS06720 0.46 +1.7 1,241,956 + MMJJ_RS06720 0.47 +4.0 1,242,020 + MMJJ_RS06720 0.54 +0.0 1,242,048 - MMJJ_RS06720 0.58 -0.2 1,242,048 - MMJJ_RS06720 0.58 +0.7 1,242,049 + MMJJ_RS06720 0.58 -1.0 1,242,064 - MMJJ_RS06720 0.60 +0.5 1,242,090 - MMJJ_RS06720 0.63 +0.5 1,242,122 - MMJJ_RS06720 0.67 +1.4 1,242,167 + MMJJ_RS06720 0.73 +2.4 1,242,187 + MMJJ_RS06720 0.75 +1.1 1,242,211 + MMJJ_RS06720 0.78 -3.7 1,242,216 - MMJJ_RS06720 0.79 +3.9 1,242,278 - MMJJ_RS06720 0.87 -1.8 1,242,302 + MMJJ_RS06720 0.90 +1.6 1,242,312 - +0.1 1,242,366 - +3.6 1,242,366 - +1.0 1,242,366 - -1.5 1,242,367 + +3.9 1,242,367 + -1.5 1,242,367 + -0.3 1,242,367 + -1.6 1,242,367 + -1.2 1,242,367 + -2.0 1,242,370 - +1.2 1,242,380 - +0.9 1,242,398 + +0.1 1,242,414 - +1.6 1,242,415 + -2.9 1,242,446 - -2.0 1,242,446 - -3.6 1,242,447 + -1.6 1,242,447 + -2.0
Or see this region's nucleotide sequence