Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06715

Experiment: Formate N-free with 2mM Adenosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate N-free with 2mM Adenosine
1,239,067	+		MMJJ_RS06710	0.31	+0.8
1,239,067	+		MMJJ_RS06710	0.31	-0.6
1,239,074	-		MMJJ_RS06710	0.32	-0.5
1,239,112	-		MMJJ_RS06710	0.35	-1.0
1,239,136	+		MMJJ_RS06710	0.36	+2.8
1,239,173	-		MMJJ_RS06710	0.39	+0.5
1,239,180	+		MMJJ_RS06710	0.40	-0.3
1,239,285	+		MMJJ_RS06710	0.47	-1.3
1,239,406	-		MMJJ_RS06710	0.56	-0.9
1,239,437	+		MMJJ_RS06710	0.58	-0.6
1,239,564	-		MMJJ_RS06710	0.67	+1.5
1,239,682	-		MMJJ_RS06710	0.76	+1.7
1,239,683	+		MMJJ_RS06710	0.76	+3.1
1,239,683	+		MMJJ_RS06710	0.76	+1.4
1,239,683	+		MMJJ_RS06710	0.76	+3.8
1,239,730	-		MMJJ_RS06710	0.79	+3.3
1,239,734	-		MMJJ_RS06710	0.80	+2.7
1,239,734	-		MMJJ_RS06710	0.80	+0.1
1,239,734	-		MMJJ_RS06710	0.80	+0.1
1,239,734	-		MMJJ_RS06710	0.80	-0.5
1,239,734	-		MMJJ_RS06710	0.80	+1.1
1,239,734	-		MMJJ_RS06710	0.80	-3.0
1,239,734	-		MMJJ_RS06710	0.80	+2.6
1,239,734	-		MMJJ_RS06710	0.80	+1.4
1,239,734	-		MMJJ_RS06710	0.80	+1.5
1,239,735	+		MMJJ_RS06710	0.80	+2.1
1,239,735	+		MMJJ_RS06710	0.80	-3.7
1,239,754	-		MMJJ_RS06710	0.81	+1.0
1,239,755	+		MMJJ_RS06710	0.81	+1.8
1,239,773	-		MMJJ_RS06710	0.83	+2.3
1,239,812	+		MMJJ_RS06710	0.85	-0.4
1,239,812	+		MMJJ_RS06710	0.85	+1.5
1,239,839	-		MMJJ_RS06710	0.87	-1.2
1,239,839	-		MMJJ_RS06710	0.87	+2.4
1,239,840	+		MMJJ_RS06710	0.87	+0.6
1,239,845	+		MMJJ_RS06710	0.88	-0.3
1,239,851	-		MMJJ_RS06710	0.88	+2.9
1,239,884	-				+0.1
1,239,907	-				+1.2
1,239,946	+				+2.2
1,239,986	-				+1.1
1,240,030	+				-2.0
1,240,034	+				+3.2
1,240,037	+				-0.4
1,240,041	-				+0.4
1,240,042	+				+0.3
1,240,042	+				-1.5
1,240,042	+				+0.8
1,240,061	-				+4.2
1,240,076	+				-2.9
1,240,087	-				-3.2
1,240,111	+				-2.1
1,240,112	-				-2.5
1,240,113	+				-1.5
1,240,194	-				-1.2
1,240,211	-		MMJJ_RS06715	0.11	-3.8
1,240,242	-		MMJJ_RS06715	0.13	-1.8
1,240,247	+		MMJJ_RS06715	0.13	-3.5
1,240,251	-		MMJJ_RS06715	0.14	-1.8
1,240,252	+		MMJJ_RS06715	0.14	-2.2
1,240,390	+		MMJJ_RS06715	0.24	-0.5
1,240,392	-		MMJJ_RS06715	0.24	-1.2
1,240,438	-		MMJJ_RS06715	0.27	-2.4
1,240,438	-		MMJJ_RS06715	0.27	+0.2
1,240,489	-		MMJJ_RS06715	0.31	-1.2
1,240,509	-		MMJJ_RS06715	0.32	-1.6
1,240,509	-		MMJJ_RS06715	0.32	-0.6
1,240,509	-		MMJJ_RS06715	0.32	-2.4
1,240,510	+		MMJJ_RS06715	0.32	-3.8
1,240,510	+		MMJJ_RS06715	0.32	-2.7
1,240,575	-		MMJJ_RS06715	0.37	-2.0
1,240,580	-		MMJJ_RS06715	0.37	-2.3
1,240,580	-		MMJJ_RS06715	0.37	-1.0
1,240,580	-		MMJJ_RS06715	0.37	-0.2
1,240,580	-		MMJJ_RS06715	0.37	-2.2
1,240,618	-		MMJJ_RS06715	0.40	-3.4
1,240,618	-		MMJJ_RS06715	0.40	-0.3
1,240,635	-		MMJJ_RS06715	0.41	-1.0
1,240,693	+		MMJJ_RS06715	0.45	-0.3
1,240,725	-		MMJJ_RS06715	0.48	-2.9
1,240,774	-		MMJJ_RS06715	0.51	-2.4
1,240,820	+		MMJJ_RS06715	0.54	-1.4
1,240,937	-		MMJJ_RS06715	0.63	-2.3
1,240,937	-		MMJJ_RS06715	0.63	-1.8
1,240,937	-		MMJJ_RS06715	0.63	-0.0
1,240,937	-		MMJJ_RS06715	0.63	-0.7
1,240,937	-		MMJJ_RS06715	0.63	-1.6
1,240,938	+		MMJJ_RS06715	0.63	-1.0
1,240,938	+		MMJJ_RS06715	0.63	-1.8
1,240,939	-		MMJJ_RS06715	0.63	-0.9
1,240,940	+		MMJJ_RS06715	0.63	-1.0
1,240,975	-		MMJJ_RS06715	0.65	-0.1
1,240,976	+		MMJJ_RS06715	0.66	-0.6
1,240,977	-		MMJJ_RS06715	0.66	-1.7
1,241,014	+		MMJJ_RS06715	0.68	-1.3
1,241,090	+		MMJJ_RS06715	0.74	-1.4
1,241,164	-		MMJJ_RS06715	0.79	-2.9
1,241,165	+		MMJJ_RS06715	0.79	-0.3
1,241,183	+		MMJJ_RS06715	0.80	-2.3
1,241,255	+		MMJJ_RS06715	0.85	-2.1
1,241,279	+		MMJJ_RS06715	0.87	+0.8
1,241,353	+				-0.8
1,241,402	-				-1.1
1,241,403	+				-0.5
1,241,432	+				-1.3
1,241,433	-				-2.3
1,241,434	+				-0.4
1,241,485	-				+0.4
1,241,488	-				+0.8
1,241,489	+				-0.3
1,241,489	+				-1.9
1,241,491	-				-2.3
1,241,503	-				+2.5
1,241,503	-				+2.1
1,241,504	+				-0.2
1,241,504	+				-0.5
1,241,506	-				-0.0
1,241,526	-				-2.0
1,241,526	-				+2.1
1,241,527	+				+0.2
1,241,527	+				+0.9
1,241,527	+				+1.4
1,241,527	+				+0.7
1,241,529	-				+1.2
1,241,529	-				-0.3
1,241,531	-				-1.1
1,241,531	-				+3.7
1,241,532	+				+2.5
1,241,532	+				-0.4
1,241,556	-				+2.8
1,241,614	-				+3.9
1,241,617	+				-1.3
1,241,617	+				-2.1
1,241,628	-				+1.6
1,241,634	-				-2.4
1,241,635	+				-0.9
1,241,635	+				+3.0
1,241,658	-				+1.5
1,241,664	+		MMJJ_RS06720	0.10	-1.5
1,241,687	+		MMJJ_RS06720	0.13	-3.1
1,241,690	+				+0.4
1,241,734	+		MMJJ_RS06720	0.19	+0.7
1,241,734	+		MMJJ_RS06720	0.19	-2.3
1,241,754	-		MMJJ_RS06720	0.21	-2.1
1,241,754	-		MMJJ_RS06720	0.21	+2.8
1,241,755	+		MMJJ_RS06720	0.22	-1.2
1,241,755	+		MMJJ_RS06720	0.22	+4.1
1,241,771	-		MMJJ_RS06720	0.24	-2.6
1,241,771	-		MMJJ_RS06720	0.24	+0.6
1,241,771	-		MMJJ_RS06720	0.24	+2.3
1,241,772	+		MMJJ_RS06720	0.24	-3.8
1,241,776	+		MMJJ_RS06720	0.24	-1.0
1,241,776	+		MMJJ_RS06720	0.24	+3.2
1,241,781	-		MMJJ_RS06720	0.25	+1.5
1,241,782	+		MMJJ_RS06720	0.25	+0.4
1,241,785	+		MMJJ_RS06720	0.25	+0.2
1,241,827	+		MMJJ_RS06720	0.30	+0.3
1,241,888	+		MMJJ_RS06720	0.38	+0.6
1,241,888	+		MMJJ_RS06720	0.38	-0.0
1,241,921	+		MMJJ_RS06720	0.42	+2.1
1,241,955	-		MMJJ_RS06720	0.46	+1.2
1,241,955	-		MMJJ_RS06720	0.46	+1.7
1,241,956	+		MMJJ_RS06720	0.47	+4.0
1,242,020	+		MMJJ_RS06720	0.54	+0.0
1,242,048	-		MMJJ_RS06720	0.58	-0.2
1,242,048	-		MMJJ_RS06720	0.58	+0.7
1,242,049	+		MMJJ_RS06720	0.58	-1.0
1,242,064	-		MMJJ_RS06720	0.60	+0.5
1,242,090	-		MMJJ_RS06720	0.63	+0.5
1,242,122	-		MMJJ_RS06720	0.67	+1.4
1,242,167	+		MMJJ_RS06720	0.73	+2.4
1,242,187	+		MMJJ_RS06720	0.75	+1.1
1,242,211	+		MMJJ_RS06720	0.78	-3.7
1,242,216	-		MMJJ_RS06720	0.79	+3.9
1,242,278	-		MMJJ_RS06720	0.87	-1.8
1,242,302	+		MMJJ_RS06720	0.90	+1.6
1,242,312	-				+0.1
1,242,366	-				+3.6
1,242,366	-				+1.0
1,242,366	-				-1.5
1,242,367	+				+3.9
1,242,367	+				-1.5
1,242,367	+				-0.3
1,242,367	+				-1.6
1,242,367	+				-1.2
1,242,367	+				-2.0
1,242,370	-				+1.2
1,242,380	-				+0.9
1,242,398	+				+0.1
1,242,414	-				+1.6
1,242,415	+				-2.9
1,242,446	-				-2.0
1,242,446	-				-3.6
1,242,447	+				-1.6
1,242,447	+				-2.0