Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06140

Experiment: Formate N-free with 2mM Adenosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate N-free with 2mM Adenosine
1,138,812	+		MMJJ_RS06130	0.81	-2.0
1,138,822	-		MMJJ_RS06130	0.85	+2.5
1,138,823	+		MMJJ_RS06130	0.86	+0.5
1,138,823	+		MMJJ_RS06130	0.86	+0.6
1,138,835	-				-0.2
1,138,838	-				-0.8
1,138,838	-				+0.9
1,138,839	+				-1.1
1,138,839	+				-1.2
1,138,920	-				+1.2
1,138,920	-				-0.1
1,138,920	-				-0.7
1,138,921	+				-0.6
1,138,921	+				-0.3
1,138,923	-				+3.6
1,138,923	-				-0.5
1,138,923	-				-0.9
1,138,923	-				+2.4
1,138,924	+				-3.4
1,138,924	+				-1.7
1,138,924	+				-1.8
1,138,925	-				+5.0
1,138,925	-				+4.4
1,138,925	-				-1.7
1,138,925	-				-0.4
1,138,925	-				-0.2
1,138,925	-				+1.8
1,138,926	+				+2.5
1,138,926	+				-1.3
1,138,926	+				+4.7
1,138,927	-				+1.0
1,138,927	-				+1.6
1,138,927	-				-0.8
1,138,927	-				+4.2
1,138,928	+				+2.4
1,138,928	+				+2.4
1,138,928	+				+0.2
1,138,928	+				+3.6
1,138,928	+				+3.3
1,138,928	+				-0.1
1,138,928	+				+0.5
1,138,928	+				+3.5
1,138,931	-				-2.1
1,138,931	-				-0.1
1,138,937	-				+1.6
1,138,938	+				+3.1
1,138,966	-				-3.0
1,138,969	-				+3.6
1,138,970	+				-2.4
1,138,970	+				+4.1
1,138,978	-				-0.9
1,138,990	-				-0.1
1,138,991	+				+4.8
1,139,038	-				-0.3
1,139,083	-		MMJJ_RS06135	0.14	+1.0
1,139,084	+		MMJJ_RS06135	0.14	+0.5
1,139,084	+		MMJJ_RS06135	0.14	+1.3
1,139,084	+		MMJJ_RS06135	0.14	+1.8
1,139,182	+		MMJJ_RS06135	0.27	+2.7
1,139,184	+		MMJJ_RS06135	0.27	+2.8
1,139,197	-		MMJJ_RS06135	0.29	-0.5
1,139,197	-		MMJJ_RS06135	0.29	+2.2
1,139,198	+		MMJJ_RS06135	0.29	+1.7
1,139,247	-		MMJJ_RS06135	0.35	+2.5
1,139,247	-		MMJJ_RS06135	0.35	-1.2
1,139,247	-		MMJJ_RS06135	0.35	+2.2
1,139,247	-		MMJJ_RS06135	0.35	+0.3
1,139,247	-		MMJJ_RS06135	0.35	+1.6
1,139,247	-		MMJJ_RS06135	0.35	+2.2
1,139,247	-		MMJJ_RS06135	0.35	+4.6
1,139,248	+		MMJJ_RS06135	0.35	+1.1
1,139,248	+		MMJJ_RS06135	0.35	+0.2
1,139,250	-		MMJJ_RS06135	0.36	+1.9
1,139,251	+		MMJJ_RS06135	0.36	+2.4
1,139,305	-		MMJJ_RS06135	0.43	+3.6
1,139,305	-		MMJJ_RS06135	0.43	+1.3
1,139,306	+		MMJJ_RS06135	0.43	+0.5
1,139,332	-		MMJJ_RS06135	0.46	+4.4
1,139,359	-		MMJJ_RS06135	0.50	+1.0
1,139,377	-		MMJJ_RS06135	0.52	+4.3
1,139,394	-		MMJJ_RS06135	0.54	+3.9
1,139,394	-		MMJJ_RS06135	0.54	+3.8
1,139,394	-		MMJJ_RS06135	0.54	+0.1
1,139,396	-		MMJJ_RS06135	0.54	-2.7
1,139,411	+		MMJJ_RS06135	0.56	+0.7
1,139,413	-		MMJJ_RS06135	0.56	+2.3
1,139,414	+		MMJJ_RS06135	0.57	+1.8
1,139,436	-		MMJJ_RS06135	0.59	-2.4
1,139,437	+		MMJJ_RS06135	0.60	+2.3
1,139,437	+		MMJJ_RS06135	0.60	+3.7
1,139,439	-		MMJJ_RS06135	0.60	+0.6
1,139,489	-		MMJJ_RS06135	0.66	+2.0
1,139,489	-		MMJJ_RS06135	0.66	-1.0
1,139,490	+		MMJJ_RS06135	0.66	+0.1
1,139,533	-		MMJJ_RS06135	0.72	-0.7
1,139,560	-		MMJJ_RS06135	0.75	+4.3
1,139,589	-		MMJJ_RS06135	0.79	-0.6
1,139,589	-		MMJJ_RS06135	0.79	+7.2
1,139,589	-		MMJJ_RS06135	0.79	-1.6
1,139,590	+		MMJJ_RS06135	0.79	+3.2
1,139,590	+		MMJJ_RS06135	0.79	+1.1
1,139,591	-		MMJJ_RS06135	0.79	+0.4
1,139,594	-		MMJJ_RS06135	0.80	+0.6
1,139,594	-		MMJJ_RS06135	0.80	-1.1
1,139,595	+		MMJJ_RS06135	0.80	+3.8
1,139,651	+		MMJJ_RS06135	0.87	+0.7
1,139,651	+		MMJJ_RS06135	0.87	+4.4
1,139,671	-		MMJJ_RS06135	0.89	+2.6
1,139,693	+				-1.2
1,139,703	-				+1.9
1,139,703	-				+1.2
1,139,707	-				+1.3
1,139,708	+				-1.9
1,139,794	-				+0.1
1,139,867	-		MMJJ_RS06140	0.11	-4.6
1,139,879	+		MMJJ_RS06140	0.12	-1.1
1,139,968	-		MMJJ_RS06140	0.23	-2.5
1,139,968	-		MMJJ_RS06140	0.23	-0.5
1,140,036	-		MMJJ_RS06140	0.32	+0.3
1,140,037	+		MMJJ_RS06140	0.32	-0.6
1,140,041	-		MMJJ_RS06140	0.32	-0.1
1,140,041	-		MMJJ_RS06140	0.32	+0.0
1,140,041	-		MMJJ_RS06140	0.32	-1.9
1,140,042	+		MMJJ_RS06140	0.32	-3.1
1,140,045	-		MMJJ_RS06140	0.33	-0.3
1,140,128	-		MMJJ_RS06140	0.43	+0.7
1,140,152	+		MMJJ_RS06140	0.46	-2.3
1,140,194	+		MMJJ_RS06140	0.51	+0.1
1,140,270	-		MMJJ_RS06140	0.61	-0.5
1,140,270	-		MMJJ_RS06140	0.61	-0.8
1,140,271	+		MMJJ_RS06140	0.61	-2.0
1,140,271	+		MMJJ_RS06140	0.61	-1.3
1,140,271	+		MMJJ_RS06140	0.61	-3.5
1,140,271	+		MMJJ_RS06140	0.61	+0.4
1,140,272	-		MMJJ_RS06140	0.61	-1.2
1,140,272	-		MMJJ_RS06140	0.61	-0.3
1,140,272	-		MMJJ_RS06140	0.61	-0.8
1,140,272	-		MMJJ_RS06140	0.61	-0.5
1,140,273	+		MMJJ_RS06140	0.61	-2.7
1,140,273	+		MMJJ_RS06140	0.61	-2.9
1,140,283	-		MMJJ_RS06140	0.62	-1.8
1,140,283	-		MMJJ_RS06140	0.62	+1.8
1,140,357	-		MMJJ_RS06140	0.71	-2.0
1,140,358	+		MMJJ_RS06140	0.71	-2.0
1,140,387	+		MMJJ_RS06140	0.75	-3.5
1,140,391	-		MMJJ_RS06140	0.76	-0.9
1,140,463	-		MMJJ_RS06140	0.85	-2.4
1,140,466	-		MMJJ_RS06140	0.85	-0.9
1,140,466	-		MMJJ_RS06140	0.85	-0.3
1,140,487	+		MMJJ_RS06140	0.87	-2.8
1,140,494	+		MMJJ_RS06140	0.88	-1.7
1,140,538	-				-0.7
1,140,564	-				+0.4
1,140,565	+				-0.9
1,140,572	-				+0.1
1,140,572	-				+0.0
1,140,572	-				-1.7
1,140,573	+				-1.4
1,140,573	+				+2.0
1,140,573	+				+3.5
1,140,573	+				-0.3
1,140,573	+				+0.3
1,140,573	+				-1.8
1,140,573	+				+3.0
1,140,573	+				+1.6
1,140,576	-				+1.0
1,140,577	+				-2.1
1,140,580	-				-1.3
1,140,580	-				-0.1
1,140,580	-				+1.6
1,140,585	-				+3.1
1,140,643	+				-0.1
1,140,762	+		MMJJ_RS06145	0.22	-0.9
1,140,940	+		MMJJ_RS06145	0.48	-0.3
1,141,207	+		MMJJ_RS06145	0.88	-0.7
1,141,399	-		MMJJ_RS06150	0.18	-0.1
1,141,495	-		MMJJ_RS06150	0.35	-2.1
1,141,495	-		MMJJ_RS06150	0.35	+0.3
1,141,548	-		MMJJ_RS06150	0.45	-1.2
1,141,555	-		MMJJ_RS06150	0.46	-1.1