Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05800

Experiment: Formate N-free with 2mM Adenosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate N-free with 2mM Adenosine
1,080,030	-		MMJJ_RS05795	0.48	+1.1
1,080,030	-		MMJJ_RS05795	0.48	-0.7
1,080,060	-		MMJJ_RS05795	0.50	+1.3
1,080,060	-		MMJJ_RS05795	0.50	-0.9
1,080,064	-		MMJJ_RS05795	0.50	-2.8
1,080,064	-		MMJJ_RS05795	0.50	-2.6
1,080,064	-		MMJJ_RS05795	0.50	+2.2
1,080,064	-		MMJJ_RS05795	0.50	+3.4
1,080,065	+		MMJJ_RS05795	0.50	+1.9
1,080,066	-		MMJJ_RS05795	0.50	-3.6
1,080,074	-		MMJJ_RS05795	0.50	-0.5
1,080,075	+		MMJJ_RS05795	0.50	-0.2
1,080,075	+		MMJJ_RS05795	0.50	-3.7
1,080,075	+		MMJJ_RS05795	0.50	+0.9
1,080,077	+		MMJJ_RS05795	0.51	+0.8
1,080,101	-		MMJJ_RS05795	0.52	-0.7
1,080,106	-		MMJJ_RS05795	0.52	+0.4
1,080,107	+		MMJJ_RS05795	0.52	+2.2
1,080,107	+		MMJJ_RS05795	0.52	-1.1
1,080,120	-		MMJJ_RS05795	0.53	+0.8
1,080,135	+		MMJJ_RS05795	0.54	+2.5
1,080,140	-		MMJJ_RS05795	0.54	+1.2
1,080,140	-		MMJJ_RS05795	0.54	+0.7
1,080,140	-		MMJJ_RS05795	0.54	-2.0
1,080,175	-		MMJJ_RS05795	0.56	+3.1
1,080,175	-		MMJJ_RS05795	0.56	+2.1
1,080,176	+		MMJJ_RS05795	0.56	+0.0
1,080,212	+		MMJJ_RS05795	0.59	-0.1
1,080,226	+		MMJJ_RS05795	0.59	-1.6
1,080,228	-		MMJJ_RS05795	0.60	+0.6
1,080,229	+		MMJJ_RS05795	0.60	+1.5
1,080,238	-		MMJJ_RS05795	0.60	+2.9
1,080,238	-		MMJJ_RS05795	0.60	+0.6
1,080,239	+		MMJJ_RS05795	0.60	+2.4
1,080,240	-		MMJJ_RS05795	0.60	+0.8
1,080,241	+		MMJJ_RS05795	0.60	-1.1
1,080,241	+		MMJJ_RS05795	0.60	+0.1
1,080,254	-		MMJJ_RS05795	0.61	+0.1
1,080,255	+		MMJJ_RS05795	0.61	+0.3
1,080,273	-		MMJJ_RS05795	0.62	-1.2
1,080,277	-		MMJJ_RS05795	0.62	+0.5
1,080,278	+		MMJJ_RS05795	0.63	-0.2
1,080,334	-		MMJJ_RS05795	0.66	+1.6
1,080,335	+		MMJJ_RS05795	0.66	-1.4
1,080,347	+		MMJJ_RS05795	0.67	+1.0
1,080,348	-		MMJJ_RS05795	0.67	-3.8
1,080,349	+		MMJJ_RS05795	0.67	-1.7
1,080,349	+		MMJJ_RS05795	0.67	-0.1
1,080,349	+		MMJJ_RS05795	0.67	-0.1
1,080,349	+		MMJJ_RS05795	0.67	-0.6
1,080,351	-		MMJJ_RS05795	0.67	-2.8
1,080,351	-		MMJJ_RS05795	0.67	+0.0
1,080,351	-		MMJJ_RS05795	0.67	-2.1
1,080,355	+		MMJJ_RS05795	0.67	-1.4
1,080,359	-		MMJJ_RS05795	0.67	+1.4
1,080,360	+		MMJJ_RS05795	0.67	-2.5
1,080,456	+		MMJJ_RS05795	0.73	+1.5
1,080,474	-		MMJJ_RS05795	0.74	+2.1
1,080,478	-		MMJJ_RS05795	0.74	-0.9
1,080,479	+		MMJJ_RS05795	0.75	-0.6
1,080,479	+		MMJJ_RS05795	0.75	+0.6
1,080,480	-		MMJJ_RS05795	0.75	+0.5
1,080,481	+		MMJJ_RS05795	0.75	-0.5
1,080,494	-		MMJJ_RS05795	0.75	+1.7
1,080,583	-		MMJJ_RS05795	0.81	+2.1
1,080,585	-		MMJJ_RS05795	0.81	-0.3
1,080,586	+		MMJJ_RS05795	0.81	-1.8
1,080,586	+		MMJJ_RS05795	0.81	-0.6
1,080,606	-		MMJJ_RS05795	0.82	-1.4
1,080,606	-		MMJJ_RS05795	0.82	-1.1
1,080,607	+		MMJJ_RS05795	0.82	-1.2
1,080,627	+		MMJJ_RS05795	0.83	-2.0
1,080,649	+		MMJJ_RS05795	0.85	-2.5
1,080,650	-		MMJJ_RS05795	0.85	-2.7
1,080,699	+		MMJJ_RS05795	0.88	-2.2
1,080,719	-		MMJJ_RS05795	0.89	-0.3
1,080,720	+		MMJJ_RS05795	0.89	+0.0
1,080,753	+				+0.2
1,080,756	-				+1.5
1,080,806	-				+1.2
1,080,820	+				+0.3
1,080,838	-				-2.8
1,080,857	-				-1.5
1,080,858	+				-0.0
1,080,904	-				+0.3
1,080,904	-				+1.8
1,080,905	+				+1.0
1,080,905	+				-0.1
1,080,905	+				+1.8
1,080,908	-				+2.2
1,080,908	-				-0.1
1,080,908	-				-0.1
1,080,908	-				-0.1
1,080,909	+				-1.4
1,080,909	+				-0.3
1,080,909	+				-2.0
1,080,909	+				-0.2
1,080,909	+				+1.4
1,080,951	+				+1.5
1,080,955	-				-0.7
1,080,956	+				-1.9
1,080,959	-				-1.1
1,080,959	-				-1.8
1,080,960	+				-1.9
1,081,083	-		MMJJ_RS05800	0.16	-0.3
1,081,195	-		MMJJ_RS05800	0.29	-1.7
1,081,195	-		MMJJ_RS05800	0.29	-0.2
1,081,195	-		MMJJ_RS05800	0.29	-2.6
1,081,196	+		MMJJ_RS05800	0.29	+0.6
1,081,196	+		MMJJ_RS05800	0.29	+2.1
1,081,258	+		MMJJ_RS05800	0.36	-3.6
1,081,258	+		MMJJ_RS05800	0.36	-1.5
1,081,258	+		MMJJ_RS05800	0.36	-0.0
1,081,276	+		MMJJ_RS05800	0.38	-2.6
1,081,276	+		MMJJ_RS05800	0.38	-2.7
1,081,289	+		MMJJ_RS05800	0.39	-0.7
1,081,390	+		MMJJ_RS05800	0.50	-1.1
1,081,390	+		MMJJ_RS05800	0.50	-2.0
1,081,448	-		MMJJ_RS05800	0.57	-0.2
1,081,449	+		MMJJ_RS05800	0.57	-2.0
1,081,473	+		MMJJ_RS05800	0.60	-2.5
1,081,514	-		MMJJ_RS05800	0.64	-1.3
1,081,541	+		MMJJ_RS05800	0.67	-0.4
1,081,544	-		MMJJ_RS05800	0.68	-2.0
1,081,545	+		MMJJ_RS05800	0.68	-3.3
1,081,545	+		MMJJ_RS05800	0.68	-3.0
1,081,559	-		MMJJ_RS05800	0.69	-1.8
1,081,559	-		MMJJ_RS05800	0.69	+2.2
1,081,560	+		MMJJ_RS05800	0.69	-2.4
1,081,560	+		MMJJ_RS05800	0.69	-2.2
1,081,563	-		MMJJ_RS05800	0.70	-2.6
1,081,587	-		MMJJ_RS05800	0.72	-1.8
1,081,587	-		MMJJ_RS05800	0.72	-2.2
1,081,587	-		MMJJ_RS05800	0.72	-1.6
1,081,588	+		MMJJ_RS05800	0.72	-2.2
1,081,588	+		MMJJ_RS05800	0.72	+1.1
1,081,590	-		MMJJ_RS05800	0.73	-0.2
1,081,591	+		MMJJ_RS05800	0.73	-2.0
1,081,591	+		MMJJ_RS05800	0.73	-1.4
1,081,634	-		MMJJ_RS05800	0.78	-3.1
1,081,654	-		MMJJ_RS05800	0.80	-0.7
1,081,654	-		MMJJ_RS05800	0.80	+0.0
1,081,655	+		MMJJ_RS05800	0.80	-0.4
1,081,659	+		MMJJ_RS05800	0.80	-3.7
1,081,771	-				-1.7
1,081,772	+				-2.1
1,081,774	+				-2.3
1,081,774	+				-3.1
1,081,800	+				-3.2
1,081,820	-				+0.2
1,081,821	+				+2.1
1,081,821	+				+0.3
1,081,827	+				-3.5
1,081,827	+				+0.4
1,081,827	+				-1.7
1,081,841	-				-0.3
1,081,857	+				-4.7
1,081,857	+				-1.8
1,081,857	+				-0.5
1,081,858	-				-1.6
1,081,858	-				+0.9
1,081,859	+				-1.4
1,081,859	+				+2.5
1,081,859	+				-4.6
1,081,859	+				-3.4
1,081,863	+				+1.5
1,081,866	+				-2.1
1,082,006	-		MMJJ_RS05805	0.10	-1.5
1,082,315	+		MMJJ_RS05805	0.36	-0.7
1,082,639	-		MMJJ_RS05805	0.63	-1.1
1,082,688	+				-0.1
1,082,814	+		MMJJ_RS05805	0.77	-0.2