Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05160

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS05155 and MMJJ_RS05160 are separated by 107 nucleotidesMMJJ_RS05160 and MMJJ_RS05165 are separated by 13 nucleotidesMMJJ_RS05165 and MMJJ_RS05170 overlap by 4 nucleotides MMJJ_RS05155: MMJJ_RS05155 - 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH, at 954,476 to 955,555 _RS05155 MMJJ_RS05160: MMJJ_RS05160 - RNA-binding protein, at 955,663 to 956,142 _RS05160 MMJJ_RS05165: MMJJ_RS05165 - class I SAM-dependent methyltransferase, at 956,156 to 956,764 _RS05165 MMJJ_RS05170: MMJJ_RS05170 - Nif3-like dinuclear metal center hexameric protein, at 956,761 to 957,501 _RS05170 Position (kb) 955 956 957Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 954.812 kb on - strand, within MMJJ_RS05155at 954.927 kb on - strand, within MMJJ_RS05155at 955.014 kb on - strand, within MMJJ_RS05155at 955.015 kb on + strand, within MMJJ_RS05155at 955.325 kb on - strand, within MMJJ_RS05155at 955.325 kb on - strand, within MMJJ_RS05155at 955.325 kb on - strand, within MMJJ_RS05155at 955.325 kb on - strand, within MMJJ_RS05155at 955.371 kb on - strand, within MMJJ_RS05155at 955.467 kb on + strandat 955.467 kb on + strandat 955.500 kb on - strandat 955.549 kb on + strandat 955.553 kb on - strandat 955.553 kb on - strandat 955.553 kb on - strandat 955.553 kb on - strandat 955.554 kb on + strandat 955.562 kb on - strandat 955.563 kb on + strandat 955.563 kb on + strandat 955.591 kb on - strandat 955.592 kb on + strandat 955.597 kb on - strandat 955.598 kb on + strandat 955.598 kb on + strandat 955.598 kb on + strandat 955.601 kb on - strandat 955.602 kb on + strandat 955.651 kb on + strandat 955.681 kb on - strandat 955.681 kb on - strandat 955.682 kb on + strandat 955.682 kb on + strandat 955.850 kb on - strandat 955.851 kb on + strand, within MMJJ_RS05160at 955.902 kb on - strand, within MMJJ_RS05160at 955.907 kb on - strand, within MMJJ_RS05160at 955.985 kb on - strand, within MMJJ_RS05160at 956.161 kb on + strandat 956.190 kb on - strandat 956.191 kb on + strandat 956.203 kb on - strandat 956.208 kb on - strandat 956.239 kb on + strand, within MMJJ_RS05165at 956.342 kb on + strand, within MMJJ_RS05165at 956.355 kb on - strand, within MMJJ_RS05165at 956.355 kb on - strand, within MMJJ_RS05165at 956.428 kb on - strand, within MMJJ_RS05165at 956.428 kb on - strand, within MMJJ_RS05165at 956.429 kb on + strand, within MMJJ_RS05165at 956.452 kb on - strand, within MMJJ_RS05165at 956.473 kb on + strand, within MMJJ_RS05165at 956.478 kb on - strand, within MMJJ_RS05165at 956.492 kb on - strand, within MMJJ_RS05165at 956.493 kb on + strand, within MMJJ_RS05165at 956.587 kb on + strand, within MMJJ_RS05165at 956.596 kb on + strand, within MMJJ_RS05165at 956.603 kb on - strand, within MMJJ_RS05165at 956.603 kb on - strand, within MMJJ_RS05165at 956.604 kb on + strand, within MMJJ_RS05165at 956.660 kb on + strand, within MMJJ_RS05165at 956.737 kb on + strandat 956.781 kb on + strandat 956.852 kb on - strand, within MMJJ_RS05170at 957.017 kb on - strand, within MMJJ_RS05170at 957.020 kb on - strand, within MMJJ_RS05170at 957.020 kb on - strand, within MMJJ_RS05170at 957.025 kb on + strand, within MMJJ_RS05170at 957.054 kb on - strand, within MMJJ_RS05170at 957.054 kb on - strand, within MMJJ_RS05170at 957.067 kb on + strand, within MMJJ_RS05170at 957.085 kb on + strand, within MMJJ_RS05170at 957.095 kb on - strand, within MMJJ_RS05170at 957.108 kb on - strand, within MMJJ_RS05170at 957.134 kb on + strand, within MMJJ_RS05170

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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954,812 - MMJJ_RS05155 0.31 -3.6
954,927 - MMJJ_RS05155 0.42 +0.2
955,014 - MMJJ_RS05155 0.50 -1.6
955,015 + MMJJ_RS05155 0.50 -1.0
955,325 - MMJJ_RS05155 0.79 +1.8
955,325 - MMJJ_RS05155 0.79 +0.9
955,325 - MMJJ_RS05155 0.79 +1.1
955,325 - MMJJ_RS05155 0.79 -3.5
955,371 - MMJJ_RS05155 0.83 -2.4
955,467 + -1.0
955,467 + -0.0
955,500 - -0.9
955,549 + +2.1
955,553 - +1.4
955,553 - -0.1
955,553 - -0.6
955,553 - +1.2
955,554 + -1.2
955,562 - +1.3
955,563 + +2.8
955,563 + -1.0
955,591 - +1.0
955,592 + +2.2
955,597 - -2.8
955,598 + -3.4
955,598 + +0.7
955,598 + -1.2
955,601 - -0.0
955,602 + -1.4
955,651 + -0.0
955,681 - -0.1
955,681 - -3.0
955,682 + -1.9
955,682 + -3.1
955,850 - +1.8
955,851 + MMJJ_RS05160 0.39 -2.9
955,902 - MMJJ_RS05160 0.50 -3.8
955,907 - MMJJ_RS05160 0.51 -3.4
955,985 - MMJJ_RS05160 0.67 +0.2
956,161 + +0.6
956,190 - -1.3
956,191 + -1.5
956,203 - -0.5
956,208 - +1.5
956,239 + MMJJ_RS05165 0.14 -0.2
956,342 + MMJJ_RS05165 0.31 -3.4
956,355 - MMJJ_RS05165 0.33 -0.5
956,355 - MMJJ_RS05165 0.33 -0.8
956,428 - MMJJ_RS05165 0.45 -1.6
956,428 - MMJJ_RS05165 0.45 -2.6
956,429 + MMJJ_RS05165 0.45 -3.7
956,452 - MMJJ_RS05165 0.49 +0.0
956,473 + MMJJ_RS05165 0.52 -0.3
956,478 - MMJJ_RS05165 0.53 -0.6
956,492 - MMJJ_RS05165 0.55 -1.7
956,493 + MMJJ_RS05165 0.55 -4.0
956,587 + MMJJ_RS05165 0.71 -1.8
956,596 + MMJJ_RS05165 0.72 -0.6
956,603 - MMJJ_RS05165 0.73 -0.5
956,603 - MMJJ_RS05165 0.73 -1.8
956,604 + MMJJ_RS05165 0.74 -1.5
956,660 + MMJJ_RS05165 0.83 -1.4
956,737 + -0.0
956,781 + -0.6
956,852 - MMJJ_RS05170 0.12 -1.7
957,017 - MMJJ_RS05170 0.35 +0.4
957,020 - MMJJ_RS05170 0.35 -4.4
957,020 - MMJJ_RS05170 0.35 -0.4
957,025 + MMJJ_RS05170 0.36 +1.4
957,054 - MMJJ_RS05170 0.40 +3.4
957,054 - MMJJ_RS05170 0.40 +0.7
957,067 + MMJJ_RS05170 0.41 -0.6
957,085 + MMJJ_RS05170 0.44 -2.0
957,095 - MMJJ_RS05170 0.45 +1.4
957,108 - MMJJ_RS05170 0.47 -0.2
957,134 + MMJJ_RS05170 0.50 -2.0

Or see this region's nucleotide sequence