Experiment: Formate N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05155 and MMJJ_RS05160 are separated by 107 nucleotides MMJJ_RS05160 and MMJJ_RS05165 are separated by 13 nucleotides MMJJ_RS05165 and MMJJ_RS05170 overlap by 4 nucleotides
MMJJ_RS05155: MMJJ_RS05155 - 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH, at 954,476 to 955,555
_RS05155
MMJJ_RS05160: MMJJ_RS05160 - RNA-binding protein, at 955,663 to 956,142
_RS05160
MMJJ_RS05165: MMJJ_RS05165 - class I SAM-dependent methyltransferase, at 956,156 to 956,764
_RS05165
MMJJ_RS05170: MMJJ_RS05170 - Nif3-like dinuclear metal center hexameric protein, at 956,761 to 957,501
_RS05170
Position (kb) 955
956
957 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 954.812 kb on - strand, within MMJJ_RS05155 at 954.927 kb on - strand, within MMJJ_RS05155 at 955.014 kb on - strand, within MMJJ_RS05155 at 955.015 kb on + strand, within MMJJ_RS05155 at 955.325 kb on - strand, within MMJJ_RS05155 at 955.325 kb on - strand, within MMJJ_RS05155 at 955.325 kb on - strand, within MMJJ_RS05155 at 955.325 kb on - strand, within MMJJ_RS05155 at 955.371 kb on - strand, within MMJJ_RS05155 at 955.467 kb on + strand at 955.467 kb on + strand at 955.500 kb on - strand at 955.549 kb on + strand at 955.553 kb on - strand at 955.553 kb on - strand at 955.553 kb on - strand at 955.553 kb on - strand at 955.554 kb on + strand at 955.562 kb on - strand at 955.563 kb on + strand at 955.563 kb on + strand at 955.591 kb on - strand at 955.592 kb on + strand at 955.597 kb on - strand at 955.598 kb on + strand at 955.598 kb on + strand at 955.598 kb on + strand at 955.601 kb on - strand at 955.602 kb on + strand at 955.651 kb on + strand at 955.681 kb on - strand at 955.681 kb on - strand at 955.682 kb on + strand at 955.682 kb on + strand at 955.850 kb on - strand at 955.851 kb on + strand, within MMJJ_RS05160 at 955.902 kb on - strand, within MMJJ_RS05160 at 955.907 kb on - strand, within MMJJ_RS05160 at 955.985 kb on - strand, within MMJJ_RS05160 at 956.161 kb on + strand at 956.190 kb on - strand at 956.191 kb on + strand at 956.203 kb on - strand at 956.208 kb on - strand at 956.239 kb on + strand, within MMJJ_RS05165 at 956.342 kb on + strand, within MMJJ_RS05165 at 956.355 kb on - strand, within MMJJ_RS05165 at 956.355 kb on - strand, within MMJJ_RS05165 at 956.428 kb on - strand, within MMJJ_RS05165 at 956.428 kb on - strand, within MMJJ_RS05165 at 956.429 kb on + strand, within MMJJ_RS05165 at 956.452 kb on - strand, within MMJJ_RS05165 at 956.473 kb on + strand, within MMJJ_RS05165 at 956.478 kb on - strand, within MMJJ_RS05165 at 956.492 kb on - strand, within MMJJ_RS05165 at 956.493 kb on + strand, within MMJJ_RS05165 at 956.587 kb on + strand, within MMJJ_RS05165 at 956.596 kb on + strand, within MMJJ_RS05165 at 956.603 kb on - strand, within MMJJ_RS05165 at 956.603 kb on - strand, within MMJJ_RS05165 at 956.604 kb on + strand, within MMJJ_RS05165 at 956.660 kb on + strand, within MMJJ_RS05165 at 956.737 kb on + strand at 956.781 kb on + strand at 956.852 kb on - strand, within MMJJ_RS05170 at 957.017 kb on - strand, within MMJJ_RS05170 at 957.020 kb on - strand, within MMJJ_RS05170 at 957.020 kb on - strand, within MMJJ_RS05170 at 957.025 kb on + strand, within MMJJ_RS05170 at 957.054 kb on - strand, within MMJJ_RS05170 at 957.054 kb on - strand, within MMJJ_RS05170 at 957.067 kb on + strand, within MMJJ_RS05170 at 957.085 kb on + strand, within MMJJ_RS05170 at 957.095 kb on - strand, within MMJJ_RS05170 at 957.108 kb on - strand, within MMJJ_RS05170 at 957.134 kb on + strand, within MMJJ_RS05170
Per-strain Table
Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine remove 954,812 - MMJJ_RS05155 0.31 -3.6 954,927 - MMJJ_RS05155 0.42 +0.2 955,014 - MMJJ_RS05155 0.50 -1.6 955,015 + MMJJ_RS05155 0.50 -1.0 955,325 - MMJJ_RS05155 0.79 +1.8 955,325 - MMJJ_RS05155 0.79 +0.9 955,325 - MMJJ_RS05155 0.79 +1.1 955,325 - MMJJ_RS05155 0.79 -3.5 955,371 - MMJJ_RS05155 0.83 -2.4 955,467 + -1.0 955,467 + -0.0 955,500 - -0.9 955,549 + +2.1 955,553 - +1.4 955,553 - -0.1 955,553 - -0.6 955,553 - +1.2 955,554 + -1.2 955,562 - +1.3 955,563 + +2.8 955,563 + -1.0 955,591 - +1.0 955,592 + +2.2 955,597 - -2.8 955,598 + -3.4 955,598 + +0.7 955,598 + -1.2 955,601 - -0.0 955,602 + -1.4 955,651 + -0.0 955,681 - -0.1 955,681 - -3.0 955,682 + -1.9 955,682 + -3.1 955,850 - +1.8 955,851 + MMJJ_RS05160 0.39 -2.9 955,902 - MMJJ_RS05160 0.50 -3.8 955,907 - MMJJ_RS05160 0.51 -3.4 955,985 - MMJJ_RS05160 0.67 +0.2 956,161 + +0.6 956,190 - -1.3 956,191 + -1.5 956,203 - -0.5 956,208 - +1.5 956,239 + MMJJ_RS05165 0.14 -0.2 956,342 + MMJJ_RS05165 0.31 -3.4 956,355 - MMJJ_RS05165 0.33 -0.5 956,355 - MMJJ_RS05165 0.33 -0.8 956,428 - MMJJ_RS05165 0.45 -1.6 956,428 - MMJJ_RS05165 0.45 -2.6 956,429 + MMJJ_RS05165 0.45 -3.7 956,452 - MMJJ_RS05165 0.49 +0.0 956,473 + MMJJ_RS05165 0.52 -0.3 956,478 - MMJJ_RS05165 0.53 -0.6 956,492 - MMJJ_RS05165 0.55 -1.7 956,493 + MMJJ_RS05165 0.55 -4.0 956,587 + MMJJ_RS05165 0.71 -1.8 956,596 + MMJJ_RS05165 0.72 -0.6 956,603 - MMJJ_RS05165 0.73 -0.5 956,603 - MMJJ_RS05165 0.73 -1.8 956,604 + MMJJ_RS05165 0.74 -1.5 956,660 + MMJJ_RS05165 0.83 -1.4 956,737 + -0.0 956,781 + -0.6 956,852 - MMJJ_RS05170 0.12 -1.7 957,017 - MMJJ_RS05170 0.35 +0.4 957,020 - MMJJ_RS05170 0.35 -4.4 957,020 - MMJJ_RS05170 0.35 -0.4 957,025 + MMJJ_RS05170 0.36 +1.4 957,054 - MMJJ_RS05170 0.40 +3.4 957,054 - MMJJ_RS05170 0.40 +0.7 957,067 + MMJJ_RS05170 0.41 -0.6 957,085 + MMJJ_RS05170 0.44 -2.0 957,095 - MMJJ_RS05170 0.45 +1.4 957,108 - MMJJ_RS05170 0.47 -0.2 957,134 + MMJJ_RS05170 0.50 -2.0
Or see this region's nucleotide sequence