Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04995

Experiment: Formate N-free with 2mM Adenosine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS04990 and MMJJ_RS04995 are separated by 134 nucleotidesMMJJ_RS04995 and MMJJ_RS05000 overlap by 1 nucleotides MMJJ_RS04990: MMJJ_RS04990 - hydroxymethylglutaryl-CoA reductase (NADPH), at 926,666 to 927,892 _RS04990 MMJJ_RS04995: MMJJ_RS04995 - Tfx family DNA-binding protein, at 928,027 to 928,476 _RS04995 MMJJ_RS05000: MMJJ_RS05000 - mRNA surveillance protein pelota, at 928,476 to 929,522 _RS05000 Position (kb) 928 929Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 927.179 kb on + strandat 927.338 kb on + strand, within MMJJ_RS04990at 927.344 kb on + strandat 927.613 kb on - strandat 927.614 kb on + strand, within MMJJ_RS04990at 927.754 kb on + strand, within MMJJ_RS04990at 927.971 kb on + strandat 927.975 kb on - strandat 927.975 kb on - strandat 927.976 kb on + strandat 927.976 kb on + strandat 927.993 kb on - strandat 927.997 kb on + strandat 927.997 kb on + strandat 927.997 kb on + strandat 927.997 kb on + strandat 927.999 kb on + strandat 928.007 kb on - strandat 928.007 kb on - strandat 928.008 kb on + strandat 928.027 kb on + strandat 928.027 kb on + strandat 928.055 kb on - strandat 928.108 kb on + strand, within MMJJ_RS04995at 928.183 kb on + strand, within MMJJ_RS04995at 928.183 kb on + strandat 928.195 kb on - strand, within MMJJ_RS04995at 928.195 kb on - strand, within MMJJ_RS04995at 928.195 kb on - strand, within MMJJ_RS04995at 928.229 kb on - strandat 928.251 kb on - strand, within MMJJ_RS04995at 928.252 kb on + strand, within MMJJ_RS04995at 928.295 kb on - strand, within MMJJ_RS04995at 928.302 kb on + strand, within MMJJ_RS04995at 928.302 kb on + strand, within MMJJ_RS04995at 928.355 kb on + strand, within MMJJ_RS04995at 928.355 kb on + strand, within MMJJ_RS04995at 928.398 kb on + strand, within MMJJ_RS04995at 928.414 kb on + strand, within MMJJ_RS04995at 928.415 kb on - strand, within MMJJ_RS04995at 928.560 kb on + strandat 928.713 kb on + strand, within MMJJ_RS05000at 928.769 kb on - strand, within MMJJ_RS05000at 928.937 kb on - strandat 929.104 kb on + strand, within MMJJ_RS05000at 929.354 kb on + strand, within MMJJ_RS05000at 929.372 kb on + strand, within MMJJ_RS05000

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
remove
927,179 + +0.1
927,338 + MMJJ_RS04990 0.55 +0.1
927,344 + -0.6
927,613 - +0.7
927,614 + MMJJ_RS04990 0.77 -1.9
927,754 + MMJJ_RS04990 0.89 -1.5
927,971 + +3.0
927,975 - -0.6
927,975 - -2.7
927,976 + +0.5
927,976 + -2.1
927,993 - -0.9
927,997 + -0.7
927,997 + -1.6
927,997 + -2.3
927,997 + -2.7
927,999 + -3.2
928,007 - -2.4
928,007 - -2.0
928,008 + +1.7
928,027 + -2.7
928,027 + -1.8
928,055 - +0.3
928,108 + MMJJ_RS04995 0.18 -2.9
928,183 + MMJJ_RS04995 0.35 -2.5
928,183 + +0.1
928,195 - MMJJ_RS04995 0.37 -2.8
928,195 - MMJJ_RS04995 0.37 -0.8
928,195 - MMJJ_RS04995 0.37 -1.5
928,229 - -0.6
928,251 - MMJJ_RS04995 0.50 -1.9
928,252 + MMJJ_RS04995 0.50 -0.9
928,295 - MMJJ_RS04995 0.60 -1.6
928,302 + MMJJ_RS04995 0.61 -1.9
928,302 + MMJJ_RS04995 0.61 +0.4
928,355 + MMJJ_RS04995 0.73 -3.2
928,355 + MMJJ_RS04995 0.73 +1.3
928,398 + MMJJ_RS04995 0.82 -1.9
928,414 + MMJJ_RS04995 0.86 -2.1
928,415 - MMJJ_RS04995 0.86 -1.6
928,560 + -1.1
928,713 + MMJJ_RS05000 0.23 -0.1
928,769 - MMJJ_RS05000 0.28 +0.7
928,937 - +0.1
929,104 + MMJJ_RS05000 0.60 +0.1
929,354 + MMJJ_RS05000 0.84 -1.1
929,372 + MMJJ_RS05000 0.86 +0.5

Or see this region's nucleotide sequence