Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04635

Experiment: Formate N-free with 2mM Adenosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate N-free with 2mM Adenosine
863,177	-		MMJJ_RS04625	0.77	+0.1
863,178	+		MMJJ_RS04625	0.77	+0.8
863,182	+		MMJJ_RS04625	0.77	-0.9
863,196	-		MMJJ_RS04625	0.78	+0.0
863,271	-		MMJJ_RS04625	0.84	-0.4
863,271	-		MMJJ_RS04625	0.84	-1.2
863,368	+				-0.1
863,369	-				-0.2
863,370	+				+0.5
863,397	-				-0.4
863,438	-				-0.7
863,449	+				-1.0
863,470	+				+1.7
863,470	+				+4.6
863,474	-				+0.5
863,474	-				-0.7
863,475	+				-2.2
863,475	+				-0.8
863,505	+				-0.6
863,568	-				+2.2
863,583	-				-1.1
863,585	-				+0.6
863,585	-				-2.6
863,585	-				-1.9
863,585	-				-0.7
863,586	+				+0.4
863,586	+				-0.7
863,586	+				-1.3
863,591	-				-0.4
863,592	+				-3.5
863,615	+				-0.3
863,615	+				-2.3
863,617	-				-2.5
863,617	-				-2.2
863,618	+				-0.2
863,669	-				+1.3
863,669	-				-1.9
863,677	-				+1.1
863,677	-				-1.0
863,678	+				+1.2
863,700	-				-1.4
863,704	-				-0.9
863,705	+				-0.4
863,731	+				-1.2
863,736	-				+0.1
863,736	-				-0.2
863,738	-				-1.2
863,750	-				+0.9
863,754	-				+0.2
863,754	-				+1.2
863,755	+				-2.8
863,755	+				-2.2
863,758	+				-2.4
863,761	+				-0.9
863,778	-				+0.3
863,792	+				-0.4
863,804	-				+1.7
863,804	-				-1.3
863,805	+				+2.4
863,911	-		MMJJ_RS04630	0.28	-1.1
864,015	-				-1.3
864,182	+		MMJJ_RS04635	0.32	-2.8
864,182	+		MMJJ_RS04635	0.32	-2.7
864,186	+		MMJJ_RS04635	0.32	-0.9
864,186	+		MMJJ_RS04635	0.32	-1.4
864,199	-		MMJJ_RS04635	0.35	-1.5
864,208	-		MMJJ_RS04635	0.37	-2.0
864,208	-		MMJJ_RS04635	0.37	-1.4
864,209	+		MMJJ_RS04635	0.37	-0.7
864,213	-		MMJJ_RS04635	0.38	-4.6
864,216	-		MMJJ_RS04635	0.38	-2.0
864,444	-		MMJJ_RS04635	0.82	-0.3
864,486	-				-1.2
864,486	-				-1.1
864,486	-				-1.1
864,487	+				-3.5
864,518	-				-1.4
864,519	+				-2.6
864,519	+				-1.8
864,520	-				-0.5
864,520	-				+0.3
864,520	-				-2.6
864,520	-				-1.7
864,520	-				-3.3
864,521	+				-4.1
864,544	-				+1.3
864,549	-				+1.3
864,549	-				-0.2
864,549	-				-1.4
864,549	-				+2.1
864,549	-				-0.2
864,549	-				-2.0
864,549	-				-3.2
864,549	-				+1.4
864,549	-				+2.6
864,549	-				-1.3
864,549	-				+2.5
864,550	+				+0.5
864,550	+				-0.9
864,550	+				-0.3
864,550	+				+0.6
864,550	+				+0.2
864,550	+				+1.1
864,550	+				+1.6
864,551	-				+0.0
864,551	-				-1.6
864,551	-				-0.0
864,551	-				+0.7
864,551	-				+2.9
864,551	-				+0.1
864,551	-				-0.2
864,551	-				-1.8
864,551	-				-1.3
864,551	-				-1.4
864,551	-				-0.3
864,551	-				-1.6
864,551	-				+0.1
864,551	-				-0.8
864,552	+				-0.9
864,552	+				-1.5
864,552	+				-1.9
864,552	+				-2.1
864,552	+				-0.7
864,552	+				-0.8
864,553	-				+0.9
864,553	-				-3.3
864,553	-				+0.2
864,553	-				+1.7
864,553	-				+0.0
864,553	-				-3.8
864,554	+				-2.7
864,554	+				+0.9
864,559	-				-2.8
864,559	-				+2.4
864,559	-				-1.3
864,559	-				-2.4
864,559	-				+0.2
864,561	-				-3.8
864,561	-				+0.2
864,562	+				-2.1
864,562	+				-2.1
864,562	+				+0.8
864,568	-				-0.4
864,568	-				+1.1
864,568	-				+0.1
864,568	-				+0.4
864,568	-				+4.7
864,568	-				-1.2
864,568	-				-2.1
864,568	-				-1.1
864,568	-				+1.0
864,568	-				+0.7
864,568	-				+1.1
864,569	+				+0.9
864,569	+				+0.9
864,569	+				-1.3
864,585	-				+0.0
864,586	+				+0.1
864,591	-				+2.0
864,592	+				-1.3
864,814	+		MMJJ_RS04640	0.20	+0.2
864,834	+		MMJJ_RS04640	0.22	+0.0
864,961	+		MMJJ_RS04640	0.34	-1.4
864,987	+		MMJJ_RS04640	0.36	+1.1
864,998	-		MMJJ_RS04640	0.37	+4.0
865,022	-		MMJJ_RS04640	0.40	+0.3
865,071	-		MMJJ_RS04640	0.44	+2.7
865,078	-		MMJJ_RS04640	0.45	+1.1
865,078	-		MMJJ_RS04640	0.45	+2.4
865,079	+		MMJJ_RS04640	0.45	+0.8
865,079	+		MMJJ_RS04640	0.45	+0.6
865,079	+		MMJJ_RS04640	0.45	+1.9
865,079	+		MMJJ_RS04640	0.45	-3.2
865,081	+		MMJJ_RS04640	0.45	+1.5
865,081	+		MMJJ_RS04640	0.45	-0.1
865,081	+		MMJJ_RS04640	0.45	-0.0
865,088	-		MMJJ_RS04640	0.46	+2.1
865,114	-		MMJJ_RS04640	0.48	+1.0
865,115	+		MMJJ_RS04640	0.49	-0.2
865,125	-		MMJJ_RS04640	0.49	-0.1
865,139	-		MMJJ_RS04640	0.51	+0.3
865,139	-		MMJJ_RS04640	0.51	+0.9
865,140	+				+1.7
865,147	-		MMJJ_RS04640	0.52	-2.1
865,147	-		MMJJ_RS04640	0.52	-0.7
865,148	+		MMJJ_RS04640	0.52	-0.6
865,167	+		MMJJ_RS04640	0.53	-0.1
865,193	-		MMJJ_RS04640	0.56	+2.6
865,193	-		MMJJ_RS04640	0.56	+2.3
865,193	-		MMJJ_RS04640	0.56	+3.7
865,194	+		MMJJ_RS04640	0.56	+2.1
865,199	-		MMJJ_RS04640	0.57	+0.3
865,199	-		MMJJ_RS04640	0.57	+1.4
865,199	-		MMJJ_RS04640	0.57	-1.5
865,200	+		MMJJ_RS04640	0.57	-0.5
865,200	+		MMJJ_RS04640	0.57	+0.7
865,200	+		MMJJ_RS04640	0.57	-0.3
865,209	-		MMJJ_RS04640	0.57	-1.1
865,209	-		MMJJ_RS04640	0.57	-0.5
865,259	-		MMJJ_RS04640	0.62	+0.7
865,277	-		MMJJ_RS04640	0.64	+3.2
865,278	+		MMJJ_RS04640	0.64	+0.8
865,289	-		MMJJ_RS04640	0.65	+0.1
865,319	-		MMJJ_RS04640	0.68	+2.3
865,319	-		MMJJ_RS04640	0.68	-0.2
865,331	-		MMJJ_RS04640	0.69	+1.8
865,334	-		MMJJ_RS04640	0.69	+1.7
865,335	+		MMJJ_RS04640	0.69	+0.1
865,348	-		MMJJ_RS04640	0.71	-2.9
865,348	-		MMJJ_RS04640	0.71	-1.2
865,348	-		MMJJ_RS04640	0.71	+2.4
865,348	-		MMJJ_RS04640	0.71	-1.9
865,348	-		MMJJ_RS04640	0.71	+3.8
865,349	+		MMJJ_RS04640	0.71	+0.4
865,349	+		MMJJ_RS04640	0.71	+2.7
865,349	+		MMJJ_RS04640	0.71	+2.5
865,349	+		MMJJ_RS04640	0.71	+0.0
865,436	-		MMJJ_RS04640	0.79	+2.2
865,437	+		MMJJ_RS04640	0.79	+2.3
865,437	+		MMJJ_RS04640	0.79	+0.4
865,479	-		MMJJ_RS04640	0.83	+1.3
865,480	+		MMJJ_RS04640	0.83	+2.6
865,480	+		MMJJ_RS04640	0.83	+2.1
865,497	+		MMJJ_RS04640	0.85	-4.1
865,526	-		MMJJ_RS04640	0.88	+1.7
865,527	+		MMJJ_RS04640	0.88	+0.2