Experiment: Formate N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03990 and MMJJ_RS03995 are separated by 34 nucleotides MMJJ_RS03995 and MMJJ_RS04000 are separated by 20 nucleotides MMJJ_RS04000 and MMJJ_RS04005 are separated by 148 nucleotides
MMJJ_RS03990: MMJJ_RS03990 - imidazole glycerol phosphate synthase subunit HisH, at 742,867 to 743,478
_RS03990
MMJJ_RS03995: MMJJ_RS03995 - PHP domain-containing protein, at 743,513 to 744,412
_RS03995
MMJJ_RS04000: MMJJ_RS04000 - NAD(P)H-hydrate dehydratase, at 744,433 to 745,959
_RS04000
MMJJ_RS04005: MMJJ_RS04005 - acetate--CoA ligase family protein, at 746,108 to 748,216
_RS04005
Position (kb) 744
745
746 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7 at 743.480 kb on - strand at 743.485 kb on + strand at 743.518 kb on - strand at 743.519 kb on + strand at 743.519 kb on + strand at 743.531 kb on - strand at 743.532 kb on + strand at 743.532 kb on + strand at 743.570 kb on - strand at 743.571 kb on + strand at 743.571 kb on + strand at 743.673 kb on + strand, within MMJJ_RS03995 at 743.677 kb on - strand, within MMJJ_RS03995 at 743.727 kb on - strand, within MMJJ_RS03995 at 743.754 kb on + strand, within MMJJ_RS03995 at 743.816 kb on - strand, within MMJJ_RS03995 at 743.947 kb on - strand, within MMJJ_RS03995 at 743.955 kb on + strand, within MMJJ_RS03995 at 743.974 kb on + strand, within MMJJ_RS03995 at 744.014 kb on - strand, within MMJJ_RS03995 at 744.014 kb on - strand, within MMJJ_RS03995 at 744.014 kb on - strand, within MMJJ_RS03995 at 744.143 kb on - strand, within MMJJ_RS03995 at 744.173 kb on - strand, within MMJJ_RS03995 at 744.188 kb on - strand, within MMJJ_RS03995 at 744.189 kb on + strand, within MMJJ_RS03995 at 744.377 kb on - strand at 744.385 kb on - strand at 744.398 kb on - strand at 744.430 kb on - strand at 744.439 kb on - strand at 744.478 kb on + strand at 744.491 kb on - strand at 744.492 kb on + strand at 744.540 kb on - strand at 744.542 kb on - strand at 744.542 kb on - strand at 744.542 kb on - strand at 744.542 kb on - strand at 744.543 kb on + strand at 744.543 kb on + strand at 744.543 kb on + strand at 744.608 kb on + strand, within MMJJ_RS04000 at 744.608 kb on + strand, within MMJJ_RS04000 at 744.610 kb on - strand, within MMJJ_RS04000 at 744.610 kb on - strand, within MMJJ_RS04000 at 744.610 kb on - strand, within MMJJ_RS04000 at 744.610 kb on - strand, within MMJJ_RS04000 at 744.610 kb on - strand, within MMJJ_RS04000 at 744.610 kb on - strand, within MMJJ_RS04000 at 744.611 kb on + strand, within MMJJ_RS04000 at 744.611 kb on + strand, within MMJJ_RS04000 at 744.611 kb on + strand, within MMJJ_RS04000 at 744.611 kb on + strand, within MMJJ_RS04000 at 744.611 kb on + strand, within MMJJ_RS04000 at 744.611 kb on + strand, within MMJJ_RS04000 at 744.611 kb on + strand, within MMJJ_RS04000 at 744.611 kb on + strand, within MMJJ_RS04000 at 744.611 kb on + strand, within MMJJ_RS04000 at 744.664 kb on + strand, within MMJJ_RS04000 at 744.664 kb on + strand, within MMJJ_RS04000 at 744.667 kb on + strand, within MMJJ_RS04000 at 744.667 kb on + strand, within MMJJ_RS04000 at 744.669 kb on - strand, within MMJJ_RS04000 at 744.685 kb on - strand, within MMJJ_RS04000 at 744.685 kb on - strand, within MMJJ_RS04000 at 744.685 kb on - strand, within MMJJ_RS04000 at 744.685 kb on - strand, within MMJJ_RS04000 at 744.686 kb on + strand, within MMJJ_RS04000 at 744.686 kb on + strand, within MMJJ_RS04000 at 744.687 kb on - strand, within MMJJ_RS04000 at 744.687 kb on - strand, within MMJJ_RS04000 at 744.703 kb on - strand, within MMJJ_RS04000 at 744.703 kb on - strand, within MMJJ_RS04000 at 744.704 kb on + strand, within MMJJ_RS04000 at 744.704 kb on + strand, within MMJJ_RS04000 at 744.740 kb on - strand, within MMJJ_RS04000 at 744.748 kb on + strand, within MMJJ_RS04000 at 744.752 kb on - strand, within MMJJ_RS04000 at 744.753 kb on + strand, within MMJJ_RS04000 at 744.765 kb on + strand, within MMJJ_RS04000 at 744.796 kb on + strand, within MMJJ_RS04000 at 744.796 kb on + strand, within MMJJ_RS04000 at 744.796 kb on + strand, within MMJJ_RS04000 at 744.838 kb on - strand, within MMJJ_RS04000 at 744.856 kb on + strand, within MMJJ_RS04000 at 744.859 kb on - strand, within MMJJ_RS04000 at 744.859 kb on - strand, within MMJJ_RS04000 at 744.860 kb on + strand, within MMJJ_RS04000 at 744.880 kb on - strand, within MMJJ_RS04000 at 744.880 kb on - strand, within MMJJ_RS04000 at 744.881 kb on + strand, within MMJJ_RS04000 at 744.892 kb on - strand, within MMJJ_RS04000 at 744.996 kb on - strand, within MMJJ_RS04000 at 744.998 kb on - strand, within MMJJ_RS04000 at 744.998 kb on - strand, within MMJJ_RS04000 at 744.999 kb on + strand, within MMJJ_RS04000 at 745.024 kb on - strand, within MMJJ_RS04000 at 745.051 kb on - strand, within MMJJ_RS04000 at 745.051 kb on - strand, within MMJJ_RS04000 at 745.052 kb on + strand, within MMJJ_RS04000 at 745.052 kb on + strand, within MMJJ_RS04000 at 745.052 kb on + strand, within MMJJ_RS04000 at 745.052 kb on + strand, within MMJJ_RS04000 at 745.052 kb on + strand, within MMJJ_RS04000 at 745.083 kb on - strand, within MMJJ_RS04000 at 745.096 kb on + strand, within MMJJ_RS04000 at 745.134 kb on + strand, within MMJJ_RS04000 at 745.190 kb on + strand, within MMJJ_RS04000 at 745.207 kb on - strand, within MMJJ_RS04000 at 745.242 kb on - strand, within MMJJ_RS04000 at 745.242 kb on - strand, within MMJJ_RS04000 at 745.243 kb on + strand, within MMJJ_RS04000 at 745.243 kb on + strand, within MMJJ_RS04000 at 745.244 kb on - strand, within MMJJ_RS04000 at 745.244 kb on - strand, within MMJJ_RS04000 at 745.245 kb on + strand, within MMJJ_RS04000 at 745.245 kb on + strand, within MMJJ_RS04000 at 745.315 kb on + strand, within MMJJ_RS04000 at 745.315 kb on + strand, within MMJJ_RS04000 at 745.382 kb on - strand, within MMJJ_RS04000 at 745.382 kb on - strand, within MMJJ_RS04000 at 745.382 kb on - strand, within MMJJ_RS04000 at 745.383 kb on + strand, within MMJJ_RS04000 at 745.394 kb on + strand, within MMJJ_RS04000 at 745.414 kb on - strand, within MMJJ_RS04000 at 745.414 kb on - strand, within MMJJ_RS04000 at 745.446 kb on - strand, within MMJJ_RS04000 at 745.480 kb on - strand, within MMJJ_RS04000 at 745.481 kb on + strand, within MMJJ_RS04000 at 745.481 kb on + strand, within MMJJ_RS04000 at 745.519 kb on - strand, within MMJJ_RS04000 at 745.554 kb on - strand, within MMJJ_RS04000 at 745.554 kb on - strand, within MMJJ_RS04000 at 745.554 kb on - strand, within MMJJ_RS04000 at 745.554 kb on - strand, within MMJJ_RS04000 at 745.554 kb on - strand, within MMJJ_RS04000 at 745.556 kb on - strand, within MMJJ_RS04000 at 745.556 kb on - strand, within MMJJ_RS04000 at 745.556 kb on - strand, within MMJJ_RS04000 at 745.556 kb on - strand, within MMJJ_RS04000 at 745.557 kb on + strand, within MMJJ_RS04000 at 745.557 kb on + strand, within MMJJ_RS04000 at 745.557 kb on + strand, within MMJJ_RS04000 at 745.561 kb on - strand, within MMJJ_RS04000 at 745.594 kb on + strand, within MMJJ_RS04000 at 745.649 kb on + strand, within MMJJ_RS04000 at 745.729 kb on - strand, within MMJJ_RS04000 at 745.729 kb on - strand, within MMJJ_RS04000 at 745.729 kb on - strand, within MMJJ_RS04000 at 745.730 kb on + strand, within MMJJ_RS04000 at 745.730 kb on + strand, within MMJJ_RS04000 at 746.012 kb on + strand at 746.016 kb on + strand at 746.016 kb on + strand at 746.017 kb on - strand at 746.017 kb on - strand at 746.021 kb on + strand at 746.032 kb on - strand at 746.033 kb on + strand at 746.033 kb on + strand at 746.060 kb on - strand at 746.061 kb on + strand at 746.061 kb on + strand at 746.062 kb on - strand at 746.062 kb on - strand at 746.066 kb on - strand at 746.067 kb on + strand at 746.067 kb on + strand at 746.067 kb on + strand at 746.072 kb on - strand at 746.072 kb on - strand at 746.072 kb on - strand at 746.073 kb on + strand at 746.079 kb on + strand at 746.086 kb on - strand at 746.087 kb on + strand at 746.088 kb on - strand at 746.088 kb on - strand at 746.088 kb on - strand at 746.089 kb on + strand at 746.089 kb on + strand at 746.105 kb on - strand at 746.105 kb on - strand at 746.105 kb on - strand at 746.105 kb on - strand at 746.105 kb on - strand at 746.105 kb on - strand at 746.106 kb on + strand at 746.106 kb on + strand at 746.106 kb on + strand at 746.106 kb on + strand at 746.106 kb on + strand at 746.108 kb on + strand at 746.127 kb on - strand at 746.127 kb on - strand at 746.152 kb on + strand at 746.152 kb on + strand at 746.169 kb on - strand at 746.169 kb on - strand at 746.182 kb on + strand at 746.235 kb on - strand at 746.235 kb on - strand at 746.235 kb on - strand at 746.236 kb on + strand at 746.265 kb on - strand at 746.265 kb on - strand at 746.265 kb on - strand at 746.265 kb on - strand at 746.266 kb on + strand at 746.266 kb on + strand at 746.266 kb on + strand at 746.267 kb on - strand at 746.275 kb on - strand at 746.276 kb on + strand at 746.276 kb on + strand at 746.283 kb on + strand at 746.323 kb on + strand, within MMJJ_RS04005 at 746.323 kb on + strand, within MMJJ_RS04005 at 746.326 kb on - strand, within MMJJ_RS04005 at 746.345 kb on - strand, within MMJJ_RS04005 at 746.353 kb on + strand, within MMJJ_RS04005 at 746.353 kb on + strand, within MMJJ_RS04005 at 746.386 kb on + strand, within MMJJ_RS04005 at 746.398 kb on + strand, within MMJJ_RS04005 at 746.401 kb on - strand, within MMJJ_RS04005 at 746.462 kb on + strand, within MMJJ_RS04005 at 746.480 kb on + strand, within MMJJ_RS04005 at 746.630 kb on - strand, within MMJJ_RS04005 at 746.631 kb on + strand, within MMJJ_RS04005 at 746.632 kb on - strand, within MMJJ_RS04005 at 746.702 kb on - strand, within MMJJ_RS04005 at 746.741 kb on - strand, within MMJJ_RS04005 at 746.808 kb on - strand, within MMJJ_RS04005 at 746.809 kb on + strand, within MMJJ_RS04005 at 746.892 kb on - strand, within MMJJ_RS04005 at 746.895 kb on + strand, within MMJJ_RS04005 at 746.923 kb on + strand, within MMJJ_RS04005 at 746.931 kb on - strand, within MMJJ_RS04005 at 746.952 kb on - strand, within MMJJ_RS04005
Per-strain Table
Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine remove 743,480 - -2.1 743,485 + +1.9 743,518 - -4.3 743,519 + -0.4 743,519 + -0.8 743,531 - -2.9 743,532 + +3.4 743,532 + -3.2 743,570 - -2.4 743,571 + -1.7 743,571 + -2.2 743,673 + MMJJ_RS03995 0.18 -3.3 743,677 - MMJJ_RS03995 0.18 -4.1 743,727 - MMJJ_RS03995 0.24 -2.0 743,754 + MMJJ_RS03995 0.27 -2.6 743,816 - MMJJ_RS03995 0.34 -1.2 743,947 - MMJJ_RS03995 0.48 -2.4 743,955 + MMJJ_RS03995 0.49 -2.5 743,974 + MMJJ_RS03995 0.51 +0.2 744,014 - MMJJ_RS03995 0.56 -3.1 744,014 - MMJJ_RS03995 0.56 -1.7 744,014 - MMJJ_RS03995 0.56 -0.4 744,143 - MMJJ_RS03995 0.70 -0.4 744,173 - MMJJ_RS03995 0.73 -1.7 744,188 - MMJJ_RS03995 0.75 -2.6 744,189 + MMJJ_RS03995 0.75 -1.4 744,377 - -2.2 744,385 - -1.2 744,398 - -2.0 744,430 - -1.3 744,439 - -3.1 744,478 + -0.8 744,491 - -2.8 744,492 + -2.1 744,540 - -1.7 744,542 - -4.4 744,542 - -1.0 744,542 - -2.4 744,542 - -3.5 744,543 + -2.6 744,543 + -2.7 744,543 + -1.3 744,608 + MMJJ_RS04000 0.11 -1.6 744,608 + MMJJ_RS04000 0.11 -1.5 744,610 - MMJJ_RS04000 0.12 -2.6 744,610 - MMJJ_RS04000 0.12 -0.5 744,610 - MMJJ_RS04000 0.12 -3.9 744,610 - MMJJ_RS04000 0.12 -2.3 744,610 - MMJJ_RS04000 0.12 -3.8 744,610 - MMJJ_RS04000 0.12 -2.4 744,611 + MMJJ_RS04000 0.12 -3.8 744,611 + MMJJ_RS04000 0.12 -2.0 744,611 + MMJJ_RS04000 0.12 -2.9 744,611 + MMJJ_RS04000 0.12 -2.0 744,611 + MMJJ_RS04000 0.12 -4.4 744,611 + MMJJ_RS04000 0.12 -4.2 744,611 + MMJJ_RS04000 0.12 -0.1 744,611 + MMJJ_RS04000 0.12 -2.7 744,611 + MMJJ_RS04000 0.12 -2.6 744,664 + MMJJ_RS04000 0.15 -1.0 744,664 + MMJJ_RS04000 0.15 -2.7 744,667 + MMJJ_RS04000 0.15 -3.0 744,667 + MMJJ_RS04000 0.15 -2.3 744,669 - MMJJ_RS04000 0.15 +1.5 744,685 - MMJJ_RS04000 0.17 -1.6 744,685 - MMJJ_RS04000 0.17 -4.2 744,685 - MMJJ_RS04000 0.17 -2.7 744,685 - MMJJ_RS04000 0.17 -4.1 744,686 + MMJJ_RS04000 0.17 -0.5 744,686 + MMJJ_RS04000 0.17 -2.9 744,687 - MMJJ_RS04000 0.17 -1.7 744,687 - MMJJ_RS04000 0.17 +0.7 744,703 - MMJJ_RS04000 0.18 -2.0 744,703 - MMJJ_RS04000 0.18 -4.2 744,704 + MMJJ_RS04000 0.18 -2.8 744,704 + MMJJ_RS04000 0.18 -2.0 744,740 - MMJJ_RS04000 0.20 -1.3 744,748 + MMJJ_RS04000 0.21 +1.1 744,752 - MMJJ_RS04000 0.21 -1.5 744,753 + MMJJ_RS04000 0.21 -2.6 744,765 + MMJJ_RS04000 0.22 -4.1 744,796 + MMJJ_RS04000 0.24 +0.8 744,796 + MMJJ_RS04000 0.24 -0.8 744,796 + MMJJ_RS04000 0.24 +2.9 744,838 - MMJJ_RS04000 0.27 -4.2 744,856 + MMJJ_RS04000 0.28 +0.0 744,859 - MMJJ_RS04000 0.28 -3.3 744,859 - MMJJ_RS04000 0.28 +0.0 744,860 + MMJJ_RS04000 0.28 -0.8 744,880 - MMJJ_RS04000 0.29 -3.5 744,880 - MMJJ_RS04000 0.29 -1.5 744,881 + MMJJ_RS04000 0.29 -3.8 744,892 - MMJJ_RS04000 0.30 -2.6 744,996 - MMJJ_RS04000 0.37 -1.6 744,998 - MMJJ_RS04000 0.37 +0.2 744,998 - MMJJ_RS04000 0.37 +0.3 744,999 + MMJJ_RS04000 0.37 -4.6 745,024 - MMJJ_RS04000 0.39 -3.8 745,051 - MMJJ_RS04000 0.40 -0.7 745,051 - MMJJ_RS04000 0.40 -0.3 745,052 + MMJJ_RS04000 0.41 -1.0 745,052 + MMJJ_RS04000 0.41 -2.6 745,052 + MMJJ_RS04000 0.41 +0.3 745,052 + MMJJ_RS04000 0.41 -1.7 745,052 + MMJJ_RS04000 0.41 -2.9 745,083 - MMJJ_RS04000 0.43 -0.8 745,096 + MMJJ_RS04000 0.43 -0.4 745,134 + MMJJ_RS04000 0.46 +0.7 745,190 + MMJJ_RS04000 0.50 +0.3 745,207 - MMJJ_RS04000 0.51 +0.0 745,242 - MMJJ_RS04000 0.53 -0.1 745,242 - MMJJ_RS04000 0.53 -1.3 745,243 + MMJJ_RS04000 0.53 -0.1 745,243 + MMJJ_RS04000 0.53 -0.0 745,244 - MMJJ_RS04000 0.53 -0.5 745,244 - MMJJ_RS04000 0.53 +2.1 745,245 + MMJJ_RS04000 0.53 +0.3 745,245 + MMJJ_RS04000 0.53 -0.1 745,315 + MMJJ_RS04000 0.58 -0.9 745,315 + MMJJ_RS04000 0.58 -1.1 745,382 - MMJJ_RS04000 0.62 -3.9 745,382 - MMJJ_RS04000 0.62 -1.8 745,382 - MMJJ_RS04000 0.62 -0.7 745,383 + MMJJ_RS04000 0.62 -2.7 745,394 + MMJJ_RS04000 0.63 -0.9 745,414 - MMJJ_RS04000 0.64 -4.5 745,414 - MMJJ_RS04000 0.64 +0.0 745,446 - MMJJ_RS04000 0.66 -1.7 745,480 - MMJJ_RS04000 0.69 -2.3 745,481 + MMJJ_RS04000 0.69 -1.0 745,481 + MMJJ_RS04000 0.69 +1.3 745,519 - MMJJ_RS04000 0.71 -2.4 745,554 - MMJJ_RS04000 0.73 +0.0 745,554 - MMJJ_RS04000 0.73 -0.8 745,554 - MMJJ_RS04000 0.73 -2.5 745,554 - MMJJ_RS04000 0.73 -1.7 745,554 - MMJJ_RS04000 0.73 +0.6 745,556 - MMJJ_RS04000 0.74 -1.2 745,556 - MMJJ_RS04000 0.74 -1.3 745,556 - MMJJ_RS04000 0.74 +0.7 745,556 - MMJJ_RS04000 0.74 -4.7 745,557 + MMJJ_RS04000 0.74 -1.9 745,557 + MMJJ_RS04000 0.74 -4.1 745,557 + MMJJ_RS04000 0.74 -0.4 745,561 - MMJJ_RS04000 0.74 -1.1 745,594 + MMJJ_RS04000 0.76 -4.0 745,649 + MMJJ_RS04000 0.80 -1.3 745,729 - MMJJ_RS04000 0.85 -4.9 745,729 - MMJJ_RS04000 0.85 -3.0 745,729 - MMJJ_RS04000 0.85 -2.7 745,730 + MMJJ_RS04000 0.85 +0.2 745,730 + MMJJ_RS04000 0.85 +0.6 746,012 + +0.9 746,016 + -2.7 746,016 + -3.4 746,017 - +4.7 746,017 - +4.4 746,021 + -1.0 746,032 - +3.7 746,033 + -1.3 746,033 + +1.9 746,060 - +3.3 746,061 + +1.1 746,061 + +4.9 746,062 - +4.5 746,062 - +3.8 746,066 - +5.3 746,067 + +1.3 746,067 + +6.4 746,067 + +5.0 746,072 - +5.2 746,072 - +4.4 746,072 - +1.1 746,073 + +3.6 746,079 + -2.8 746,086 - -1.3 746,087 + -0.2 746,088 - +7.5 746,088 - +5.4 746,088 - +2.5 746,089 + -0.0 746,089 + +5.5 746,105 - -0.7 746,105 - +5.3 746,105 - +3.8 746,105 - +4.9 746,105 - +3.5 746,105 - -4.7 746,106 + -3.7 746,106 + +4.7 746,106 + +4.3 746,106 + -0.7 746,106 + +1.4 746,108 + +1.6 746,127 - +3.0 746,127 - +5.6 746,152 + +7.0 746,152 + +2.6 746,169 - +3.0 746,169 - +1.3 746,182 + +7.1 746,235 - +4.3 746,235 - +2.1 746,235 - +3.5 746,236 + +2.3 746,265 - +1.8 746,265 - +3.0 746,265 - +1.3 746,265 - +4.3 746,266 + +4.7 746,266 + +5.6 746,266 + +5.2 746,267 - +5.2 746,275 - +4.5 746,276 + +5.5 746,276 + +4.1 746,283 + +5.0 746,323 + MMJJ_RS04005 0.10 +1.6 746,323 + MMJJ_RS04005 0.10 +2.4 746,326 - MMJJ_RS04005 0.10 -2.3 746,345 - MMJJ_RS04005 0.11 +4.0 746,353 + MMJJ_RS04005 0.12 +3.7 746,353 + MMJJ_RS04005 0.12 +3.6 746,386 + MMJJ_RS04005 0.13 +4.1 746,398 + MMJJ_RS04005 0.14 +2.1 746,401 - MMJJ_RS04005 0.14 -0.7 746,462 + MMJJ_RS04005 0.17 +4.1 746,480 + MMJJ_RS04005 0.18 +0.9 746,630 - MMJJ_RS04005 0.25 +1.7 746,631 + MMJJ_RS04005 0.25 +5.9 746,632 - MMJJ_RS04005 0.25 +2.0 746,702 - MMJJ_RS04005 0.28 +7.0 746,741 - MMJJ_RS04005 0.30 +2.8 746,808 - MMJJ_RS04005 0.33 +5.9 746,809 + MMJJ_RS04005 0.33 +5.7 746,892 - MMJJ_RS04005 0.37 +2.7 746,895 + MMJJ_RS04005 0.37 +3.7 746,923 + MMJJ_RS04005 0.39 +4.4 746,931 - MMJJ_RS04005 0.39 +4.2 746,952 - MMJJ_RS04005 0.40 +5.1
Or see this region's nucleotide sequence