Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03655

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03650 and MMJJ_RS03655 are separated by 9 nucleotidesMMJJ_RS03655 and MMJJ_RS03660 are separated by 0 nucleotidesMMJJ_RS03660 and MMJJ_RS03665 are separated by 132 nucleotides MMJJ_RS03650: MMJJ_RS03650 - class I SAM-dependent methyltransferase family protein, at 680,985 to 682,013 _RS03650 MMJJ_RS03655: MMJJ_RS03655 - replication factor C large subunit, at 682,023 to 683,483 _RS03655 MMJJ_RS03660: MMJJ_RS03660 - DUF447 family protein, at 683,484 to 684,029 _RS03660 MMJJ_RS03665: MMJJ_RS03665 - shikimate kinase, at 684,162 to 685,013 _RS03665 Position (kb) 682 683 684Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 681.055 kb on - strandat 681.056 kb on + strandat 681.059 kb on - strandat 681.062 kb on - strandat 681.099 kb on - strand, within MMJJ_RS03650at 681.286 kb on + strand, within MMJJ_RS03650at 681.476 kb on - strand, within MMJJ_RS03650at 681.477 kb on + strand, within MMJJ_RS03650at 681.483 kb on - strand, within MMJJ_RS03650at 681.483 kb on - strand, within MMJJ_RS03650at 681.484 kb on + strand, within MMJJ_RS03650at 681.484 kb on + strand, within MMJJ_RS03650at 681.528 kb on - strand, within MMJJ_RS03650at 681.577 kb on - strand, within MMJJ_RS03650at 681.578 kb on + strand, within MMJJ_RS03650at 681.595 kb on - strand, within MMJJ_RS03650at 681.595 kb on - strand, within MMJJ_RS03650at 681.596 kb on + strand, within MMJJ_RS03650at 681.629 kb on - strand, within MMJJ_RS03650at 681.630 kb on + strand, within MMJJ_RS03650at 681.712 kb on - strand, within MMJJ_RS03650at 681.713 kb on + strand, within MMJJ_RS03650at 681.788 kb on + strand, within MMJJ_RS03650at 681.865 kb on + strand, within MMJJ_RS03650at 681.868 kb on + strand, within MMJJ_RS03650at 681.958 kb on + strandat 681.976 kb on - strandat 681.976 kb on - strandat 681.976 kb on - strandat 681.977 kb on + strandat 681.977 kb on + strandat 681.983 kb on + strandat 681.997 kb on - strandat 681.998 kb on + strandat 682.001 kb on + strandat 682.012 kb on + strandat 682.017 kb on + strandat 682.161 kb on + strandat 682.186 kb on + strand, within MMJJ_RS03655at 682.186 kb on + strand, within MMJJ_RS03655at 682.242 kb on + strand, within MMJJ_RS03655at 682.260 kb on - strand, within MMJJ_RS03655at 682.311 kb on + strand, within MMJJ_RS03655at 682.512 kb on + strand, within MMJJ_RS03655at 682.732 kb on + strand, within MMJJ_RS03655at 683.067 kb on - strandat 683.297 kb on + strandat 683.485 kb on - strandat 683.494 kb on + strandat 683.608 kb on + strand, within MMJJ_RS03660at 683.647 kb on - strand, within MMJJ_RS03660at 683.712 kb on + strand, within MMJJ_RS03660at 683.869 kb on - strand, within MMJJ_RS03660at 683.882 kb on - strand, within MMJJ_RS03660at 683.887 kb on + strand, within MMJJ_RS03660at 683.893 kb on - strand, within MMJJ_RS03660at 683.893 kb on - strand, within MMJJ_RS03660at 683.894 kb on + strandat 683.938 kb on - strand, within MMJJ_RS03660at 684.030 kb on + strandat 684.030 kb on + strandat 684.043 kb on + strandat 684.056 kb on - strandat 684.056 kb on - strandat 684.057 kb on + strandat 684.057 kb on + strandat 684.060 kb on + strandat 684.070 kb on + strandat 684.070 kb on + strandat 684.071 kb on - strandat 684.071 kb on - strandat 684.071 kb on - strandat 684.074 kb on - strandat 684.075 kb on + strandat 684.077 kb on - strandat 684.077 kb on - strandat 684.077 kb on - strandat 684.077 kb on - strandat 684.078 kb on + strandat 684.078 kb on + strandat 684.079 kb on - strandat 684.082 kb on - strandat 684.082 kb on - strandat 684.082 kb on - strandat 684.082 kb on - strandat 684.083 kb on + strandat 684.085 kb on - strandat 684.085 kb on - strandat 684.085 kb on - strandat 684.086 kb on + strandat 684.086 kb on + strandat 684.086 kb on + strandat 684.086 kb on + strandat 684.086 kb on + strandat 684.086 kb on + strandat 684.098 kb on - strandat 684.099 kb on + strandat 684.099 kb on + strandat 684.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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681,055 - -1.7
681,056 + -1.0
681,059 - -0.7
681,062 - -2.7
681,099 - MMJJ_RS03650 0.11 -2.3
681,286 + MMJJ_RS03650 0.29 -2.1
681,476 - MMJJ_RS03650 0.48 -0.9
681,477 + MMJJ_RS03650 0.48 -1.1
681,483 - MMJJ_RS03650 0.48 +0.0
681,483 - MMJJ_RS03650 0.48 -2.9
681,484 + MMJJ_RS03650 0.48 -0.6
681,484 + MMJJ_RS03650 0.48 -1.4
681,528 - MMJJ_RS03650 0.53 -3.2
681,577 - MMJJ_RS03650 0.58 -2.6
681,578 + MMJJ_RS03650 0.58 -2.9
681,595 - MMJJ_RS03650 0.59 -2.8
681,595 - MMJJ_RS03650 0.59 -2.0
681,596 + MMJJ_RS03650 0.59 -2.2
681,629 - MMJJ_RS03650 0.63 -1.2
681,630 + MMJJ_RS03650 0.63 -2.1
681,712 - MMJJ_RS03650 0.71 -0.2
681,713 + MMJJ_RS03650 0.71 -0.7
681,788 + MMJJ_RS03650 0.78 -1.1
681,865 + MMJJ_RS03650 0.86 -1.6
681,868 + MMJJ_RS03650 0.86 -2.0
681,958 + -2.4
681,976 - -1.6
681,976 - +0.6
681,976 - -1.6
681,977 + +0.0
681,977 + -0.8
681,983 + -1.2
681,997 - +1.7
681,998 + -3.9
682,001 + +3.7
682,012 + -3.4
682,017 + +1.1
682,161 + -3.0
682,186 + MMJJ_RS03655 0.11 -2.0
682,186 + MMJJ_RS03655 0.11 -3.5
682,242 + MMJJ_RS03655 0.15 -0.6
682,260 - MMJJ_RS03655 0.16 -3.9
682,311 + MMJJ_RS03655 0.20 -1.2
682,512 + MMJJ_RS03655 0.33 -1.6
682,732 + MMJJ_RS03655 0.49 -2.2
683,067 - +0.6
683,297 + +0.6
683,485 - -0.4
683,494 + -2.6
683,608 + MMJJ_RS03660 0.23 -1.2
683,647 - MMJJ_RS03660 0.30 -2.0
683,712 + MMJJ_RS03660 0.42 -2.2
683,869 - MMJJ_RS03660 0.71 -1.3
683,882 - MMJJ_RS03660 0.73 -1.2
683,887 + MMJJ_RS03660 0.74 -1.6
683,893 - MMJJ_RS03660 0.75 -1.7
683,893 - MMJJ_RS03660 0.75 -2.3
683,894 + -0.7
683,938 - MMJJ_RS03660 0.83 -1.7
684,030 + -1.0
684,030 + -1.0
684,043 + -2.8
684,056 - -2.5
684,056 - -0.7
684,057 + -1.7
684,057 + -0.3
684,060 + -0.6
684,070 + -1.3
684,070 + +1.0
684,071 - -1.3
684,071 - -0.3
684,071 - +1.2
684,074 - -2.5
684,075 + -1.4
684,077 - -0.6
684,077 - +0.0
684,077 - +1.5
684,077 - -1.2
684,078 + -1.1
684,078 + -2.1
684,079 - -0.6
684,082 - -1.3
684,082 - -2.0
684,082 - +1.8
684,082 - -2.2
684,083 + +0.6
684,085 - +1.7
684,085 - +1.6
684,085 - -2.2
684,086 + -3.2
684,086 + -0.5
684,086 + -1.2
684,086 + +0.0
684,086 + -1.1
684,086 + +0.2
684,098 - -1.0
684,099 + -0.4
684,099 + -0.4
684,103 - -1.6

Or see this region's nucleotide sequence