Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03630

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03620 and MMJJ_RS03625 are separated by 13 nucleotidesMMJJ_RS03625 and MMJJ_RS03630 are separated by 109 nucleotidesMMJJ_RS03630 and MMJJ_RS03635 are separated by 135 nucleotides MMJJ_RS03620: MMJJ_RS03620 - DUF2097 domain-containing protein, at 674,364 to 674,654 _RS03620 MMJJ_RS03625: MMJJ_RS03625 - DUF63 family protein, at 674,668 to 675,474 _RS03625 MMJJ_RS03630: MMJJ_RS03630 - AMP phosphorylase, at 675,584 to 677,101 _RS03630 MMJJ_RS03635: MMJJ_RS03635 - methionine--tRNA ligase, at 677,237 to 679,228 _RS03635 Position (kb) 675 676 677 678Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 674.590 kb on - strand, within MMJJ_RS03620at 674.590 kb on - strand, within MMJJ_RS03620at 674.591 kb on + strand, within MMJJ_RS03620at 674.638 kb on - strandat 674.639 kb on + strandat 674.655 kb on + strandat 674.669 kb on - strandat 674.688 kb on - strandat 674.689 kb on + strandat 674.689 kb on + strandat 674.689 kb on + strandat 674.692 kb on - strandat 674.735 kb on + strandat 674.741 kb on + strandat 674.743 kb on - strandat 674.744 kb on + strandat 674.745 kb on - strandat 674.745 kb on - strandat 674.746 kb on + strandat 674.746 kb on + strandat 674.782 kb on - strand, within MMJJ_RS03625at 674.782 kb on - strand, within MMJJ_RS03625at 674.782 kb on - strand, within MMJJ_RS03625at 674.783 kb on + strand, within MMJJ_RS03625at 674.783 kb on + strand, within MMJJ_RS03625at 674.783 kb on + strand, within MMJJ_RS03625at 674.821 kb on - strand, within MMJJ_RS03625at 674.822 kb on + strand, within MMJJ_RS03625at 674.825 kb on + strand, within MMJJ_RS03625at 674.832 kb on + strand, within MMJJ_RS03625at 674.888 kb on - strand, within MMJJ_RS03625at 674.888 kb on - strand, within MMJJ_RS03625at 674.890 kb on - strand, within MMJJ_RS03625at 674.891 kb on + strand, within MMJJ_RS03625at 674.923 kb on - strand, within MMJJ_RS03625at 674.923 kb on - strand, within MMJJ_RS03625at 674.939 kb on + strand, within MMJJ_RS03625at 674.945 kb on - strand, within MMJJ_RS03625at 674.946 kb on + strand, within MMJJ_RS03625at 674.954 kb on + strand, within MMJJ_RS03625at 674.994 kb on + strand, within MMJJ_RS03625at 675.005 kb on - strand, within MMJJ_RS03625at 675.006 kb on + strand, within MMJJ_RS03625at 675.006 kb on + strand, within MMJJ_RS03625at 675.008 kb on - strand, within MMJJ_RS03625at 675.009 kb on + strand, within MMJJ_RS03625at 675.013 kb on - strand, within MMJJ_RS03625at 675.013 kb on - strand, within MMJJ_RS03625at 675.014 kb on + strand, within MMJJ_RS03625at 675.035 kb on - strand, within MMJJ_RS03625at 675.036 kb on + strand, within MMJJ_RS03625at 675.086 kb on - strand, within MMJJ_RS03625at 675.087 kb on + strand, within MMJJ_RS03625at 675.100 kb on - strand, within MMJJ_RS03625at 675.100 kb on - strand, within MMJJ_RS03625at 675.113 kb on + strand, within MMJJ_RS03625at 675.121 kb on - strand, within MMJJ_RS03625at 675.125 kb on - strand, within MMJJ_RS03625at 675.126 kb on + strand, within MMJJ_RS03625at 675.126 kb on + strand, within MMJJ_RS03625at 675.129 kb on + strand, within MMJJ_RS03625at 675.129 kb on + strand, within MMJJ_RS03625at 675.156 kb on - strand, within MMJJ_RS03625at 675.157 kb on + strand, within MMJJ_RS03625at 675.160 kb on - strand, within MMJJ_RS03625at 675.177 kb on + strand, within MMJJ_RS03625at 675.177 kb on + strand, within MMJJ_RS03625at 675.197 kb on + strand, within MMJJ_RS03625at 675.216 kb on + strand, within MMJJ_RS03625at 675.278 kb on - strand, within MMJJ_RS03625at 675.278 kb on - strand, within MMJJ_RS03625at 675.288 kb on - strand, within MMJJ_RS03625at 675.289 kb on + strand, within MMJJ_RS03625at 675.289 kb on + strand, within MMJJ_RS03625at 675.394 kb on - strandat 675.400 kb on + strandat 675.429 kb on - strandat 675.429 kb on - strandat 675.429 kb on - strandat 675.429 kb on - strandat 675.429 kb on - strandat 675.429 kb on - strandat 675.429 kb on - strandat 675.429 kb on - strandat 675.430 kb on + strandat 675.430 kb on + strandat 675.431 kb on - strandat 675.431 kb on - strandat 675.431 kb on - strandat 675.431 kb on - strandat 675.431 kb on - strandat 675.432 kb on + strandat 675.490 kb on + strandat 675.496 kb on + strandat 675.504 kb on - strandat 675.536 kb on + strandat 675.539 kb on - strandat 675.546 kb on + strandat 675.552 kb on + strandat 675.555 kb on - strandat 675.561 kb on - strandat 675.562 kb on + strandat 675.565 kb on - strandat 675.565 kb on - strandat 675.565 kb on - strandat 675.565 kb on - strandat 675.565 kb on - strandat 675.565 kb on - strandat 675.565 kb on - strandat 675.566 kb on + strandat 675.566 kb on + strandat 675.566 kb on + strandat 675.566 kb on + strandat 675.566 kb on + strandat 675.566 kb on + strandat 675.566 kb on + strandat 675.568 kb on + strandat 675.568 kb on + strandat 675.596 kb on - strandat 675.597 kb on + strandat 675.597 kb on + strandat 675.633 kb on - strandat 675.634 kb on + strandat 675.653 kb on - strandat 675.688 kb on + strandat 675.694 kb on - strandat 675.694 kb on - strandat 675.695 kb on + strandat 675.695 kb on + strandat 675.696 kb on - strandat 675.696 kb on - strandat 675.716 kb on + strandat 675.743 kb on - strand, within MMJJ_RS03630at 675.808 kb on - strand, within MMJJ_RS03630at 675.809 kb on + strand, within MMJJ_RS03630at 675.813 kb on + strand, within MMJJ_RS03630at 675.814 kb on - strand, within MMJJ_RS03630at 675.833 kb on - strand, within MMJJ_RS03630at 675.950 kb on - strand, within MMJJ_RS03630at 676.140 kb on - strand, within MMJJ_RS03630at 676.141 kb on + strand, within MMJJ_RS03630at 676.141 kb on + strand, within MMJJ_RS03630at 676.146 kb on + strand, within MMJJ_RS03630at 676.255 kb on - strand, within MMJJ_RS03630at 676.269 kb on - strand, within MMJJ_RS03630at 676.269 kb on - strand, within MMJJ_RS03630at 676.478 kb on - strand, within MMJJ_RS03630at 676.479 kb on + strand, within MMJJ_RS03630at 676.479 kb on + strand, within MMJJ_RS03630at 676.554 kb on + strand, within MMJJ_RS03630at 676.576 kb on + strand, within MMJJ_RS03630at 676.576 kb on + strand, within MMJJ_RS03630at 676.600 kb on - strand, within MMJJ_RS03630at 676.680 kb on + strand, within MMJJ_RS03630at 676.680 kb on + strand, within MMJJ_RS03630at 676.703 kb on + strand, within MMJJ_RS03630at 676.707 kb on - strand, within MMJJ_RS03630at 676.707 kb on - strand, within MMJJ_RS03630at 676.708 kb on + strand, within MMJJ_RS03630at 676.708 kb on + strand, within MMJJ_RS03630at 676.711 kb on - strand, within MMJJ_RS03630at 676.711 kb on - strand, within MMJJ_RS03630at 676.711 kb on - strand, within MMJJ_RS03630at 676.712 kb on + strand, within MMJJ_RS03630at 676.781 kb on - strand, within MMJJ_RS03630at 676.781 kb on - strand, within MMJJ_RS03630at 676.796 kb on - strand, within MMJJ_RS03630at 676.825 kb on - strand, within MMJJ_RS03630at 676.859 kb on - strand, within MMJJ_RS03630at 676.860 kb on + strand, within MMJJ_RS03630at 676.907 kb on - strand, within MMJJ_RS03630at 676.907 kb on - strand, within MMJJ_RS03630at 676.908 kb on + strand, within MMJJ_RS03630at 676.949 kb on + strand, within MMJJ_RS03630at 676.953 kb on - strandat 676.953 kb on - strandat 676.954 kb on + strandat 676.972 kb on - strandat 676.988 kb on - strandat 677.013 kb on - strandat 677.013 kb on - strandat 677.014 kb on + strandat 677.076 kb on + strandat 677.097 kb on + strandat 677.097 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.121 kb on + strandat 677.132 kb on - strandat 677.133 kb on + strandat 677.140 kb on - strandat 677.155 kb on - strandat 677.155 kb on - strandat 677.156 kb on + strandat 677.156 kb on + strandat 677.158 kb on + strandat 677.161 kb on - strandat 677.162 kb on + strandat 677.167 kb on + strandat 677.236 kb on + strandat 677.288 kb on - strandat 677.293 kb on - strandat 677.541 kb on - strand, within MMJJ_RS03635at 677.554 kb on - strand, within MMJJ_RS03635at 677.555 kb on + strand, within MMJJ_RS03635at 677.623 kb on - strand, within MMJJ_RS03635at 677.682 kb on + strand, within MMJJ_RS03635at 677.720 kb on - strand, within MMJJ_RS03635

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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674,590 - MMJJ_RS03620 0.78 -2.4
674,590 - MMJJ_RS03620 0.78 -1.5
674,591 + MMJJ_RS03620 0.78 -1.6
674,638 - -2.0
674,639 + -2.4
674,655 + -2.6
674,669 - +1.5
674,688 - -0.7
674,689 + -0.5
674,689 + +0.4
674,689 + -0.7
674,692 - -0.1
674,735 + +2.3
674,741 + +0.2
674,743 - -0.2
674,744 + -3.2
674,745 - +0.0
674,745 - +0.2
674,746 + +0.8
674,746 + -3.6
674,782 - MMJJ_RS03625 0.14 -1.0
674,782 - MMJJ_RS03625 0.14 -1.5
674,782 - MMJJ_RS03625 0.14 -1.0
674,783 + MMJJ_RS03625 0.14 -0.2
674,783 + MMJJ_RS03625 0.14 -0.6
674,783 + MMJJ_RS03625 0.14 +2.4
674,821 - MMJJ_RS03625 0.19 +1.1
674,822 + MMJJ_RS03625 0.19 -1.9
674,825 + MMJJ_RS03625 0.19 +0.4
674,832 + MMJJ_RS03625 0.20 +0.3
674,888 - MMJJ_RS03625 0.27 +0.1
674,888 - MMJJ_RS03625 0.27 +1.4
674,890 - MMJJ_RS03625 0.28 -0.8
674,891 + MMJJ_RS03625 0.28 +0.6
674,923 - MMJJ_RS03625 0.32 +1.4
674,923 - MMJJ_RS03625 0.32 -0.2
674,939 + MMJJ_RS03625 0.34 +0.7
674,945 - MMJJ_RS03625 0.34 -1.7
674,946 + MMJJ_RS03625 0.34 -0.1
674,954 + MMJJ_RS03625 0.35 +0.9
674,994 + MMJJ_RS03625 0.40 -1.3
675,005 - MMJJ_RS03625 0.42 -0.3
675,006 + MMJJ_RS03625 0.42 +0.2
675,006 + MMJJ_RS03625 0.42 -3.0
675,008 - MMJJ_RS03625 0.42 -0.9
675,009 + MMJJ_RS03625 0.42 -1.0
675,013 - MMJJ_RS03625 0.43 +0.7
675,013 - MMJJ_RS03625 0.43 -0.1
675,014 + MMJJ_RS03625 0.43 -1.2
675,035 - MMJJ_RS03625 0.45 -2.9
675,036 + MMJJ_RS03625 0.46 -0.1
675,086 - MMJJ_RS03625 0.52 +0.0
675,087 + MMJJ_RS03625 0.52 -3.3
675,100 - MMJJ_RS03625 0.54 -1.3
675,100 - MMJJ_RS03625 0.54 -0.6
675,113 + MMJJ_RS03625 0.55 -2.0
675,121 - MMJJ_RS03625 0.56 -0.3
675,125 - MMJJ_RS03625 0.57 -1.0
675,126 + MMJJ_RS03625 0.57 -1.5
675,126 + MMJJ_RS03625 0.57 +3.9
675,129 + MMJJ_RS03625 0.57 +2.4
675,129 + MMJJ_RS03625 0.57 +0.2
675,156 - MMJJ_RS03625 0.60 -3.9
675,157 + MMJJ_RS03625 0.61 +2.9
675,160 - MMJJ_RS03625 0.61 +1.3
675,177 + MMJJ_RS03625 0.63 -0.6
675,177 + MMJJ_RS03625 0.63 -0.2
675,197 + MMJJ_RS03625 0.66 +1.0
675,216 + MMJJ_RS03625 0.68 -0.5
675,278 - MMJJ_RS03625 0.76 +1.3
675,278 - MMJJ_RS03625 0.76 +2.1
675,288 - MMJJ_RS03625 0.77 -2.7
675,289 + MMJJ_RS03625 0.77 -3.6
675,289 + MMJJ_RS03625 0.77 +0.3
675,394 - +2.2
675,400 + +0.4
675,429 - +2.2
675,429 - -0.2
675,429 - +0.8
675,429 - -1.6
675,429 - -0.1
675,429 - -0.5
675,429 - -2.0
675,429 - +0.6
675,430 + -1.8
675,430 + +3.9
675,431 - +2.1
675,431 - -2.0
675,431 - -1.0
675,431 - +0.2
675,431 - +1.2
675,432 + +0.4
675,490 + -1.0
675,496 + +2.1
675,504 - +0.7
675,536 + +1.2
675,539 - -1.2
675,546 + +0.3
675,552 + -2.3
675,555 - -1.4
675,561 - +1.4
675,562 + -1.7
675,565 - +1.5
675,565 - -2.6
675,565 - +0.1
675,565 - +0.6
675,565 - +0.1
675,565 - -0.1
675,565 - -2.3
675,566 + +0.1
675,566 + -2.4
675,566 + -0.0
675,566 + +2.1
675,566 + +1.7
675,566 + +0.3
675,566 + -0.7
675,568 + -0.8
675,568 + -0.2
675,596 - +0.3
675,597 + -3.2
675,597 + +4.0
675,633 - -5.5
675,634 + -1.6
675,653 - -2.7
675,688 + -2.7
675,694 - -2.7
675,694 - -1.6
675,695 + -4.7
675,695 + -2.0
675,696 - -4.2
675,696 - -2.6
675,716 + -2.1
675,743 - MMJJ_RS03630 0.10 -3.6
675,808 - MMJJ_RS03630 0.15 -3.8
675,809 + MMJJ_RS03630 0.15 -0.8
675,813 + MMJJ_RS03630 0.15 -3.0
675,814 - MMJJ_RS03630 0.15 -1.7
675,833 - MMJJ_RS03630 0.16 +0.1
675,950 - MMJJ_RS03630 0.24 -3.3
676,140 - MMJJ_RS03630 0.37 -4.5
676,141 + MMJJ_RS03630 0.37 -4.5
676,141 + MMJJ_RS03630 0.37 -3.2
676,146 + MMJJ_RS03630 0.37 -4.4
676,255 - MMJJ_RS03630 0.44 -0.5
676,269 - MMJJ_RS03630 0.45 -4.3
676,269 - MMJJ_RS03630 0.45 -2.6
676,478 - MMJJ_RS03630 0.59 -1.8
676,479 + MMJJ_RS03630 0.59 -4.5
676,479 + MMJJ_RS03630 0.59 -1.8
676,554 + MMJJ_RS03630 0.64 -1.6
676,576 + MMJJ_RS03630 0.65 -1.9
676,576 + MMJJ_RS03630 0.65 -3.6
676,600 - MMJJ_RS03630 0.67 -1.8
676,680 + MMJJ_RS03630 0.72 -1.7
676,680 + MMJJ_RS03630 0.72 -1.5
676,703 + MMJJ_RS03630 0.74 -3.2
676,707 - MMJJ_RS03630 0.74 -4.1
676,707 - MMJJ_RS03630 0.74 -2.4
676,708 + MMJJ_RS03630 0.74 -3.0
676,708 + MMJJ_RS03630 0.74 -3.7
676,711 - MMJJ_RS03630 0.74 -2.0
676,711 - MMJJ_RS03630 0.74 -1.2
676,711 - MMJJ_RS03630 0.74 -2.0
676,712 + MMJJ_RS03630 0.74 -2.4
676,781 - MMJJ_RS03630 0.79 -4.3
676,781 - MMJJ_RS03630 0.79 -1.0
676,796 - MMJJ_RS03630 0.80 -3.0
676,825 - MMJJ_RS03630 0.82 -4.1
676,859 - MMJJ_RS03630 0.84 -2.5
676,860 + MMJJ_RS03630 0.84 -2.2
676,907 - MMJJ_RS03630 0.87 +0.4
676,907 - MMJJ_RS03630 0.87 -2.1
676,908 + MMJJ_RS03630 0.87 -1.9
676,949 + MMJJ_RS03630 0.90 -5.0
676,953 - -3.4
676,953 - -2.5
676,954 + -3.5
676,972 - -5.0
676,988 - -2.5
677,013 - -3.9
677,013 - -4.5
677,014 + -1.2
677,076 + -1.4
677,097 + -2.8
677,097 + -1.6
677,121 + -2.7
677,121 + -0.6
677,121 + +0.5
677,132 - -5.4
677,133 + -2.1
677,140 - +0.4
677,155 - -4.0
677,155 - -2.9
677,156 + -2.5
677,156 + -0.7
677,158 + -0.7
677,161 - -2.6
677,162 + -2.9
677,167 + -1.5
677,236 + -0.1
677,288 - -1.1
677,293 - +0.6
677,541 - MMJJ_RS03635 0.15 -1.3
677,554 - MMJJ_RS03635 0.16 -2.1
677,555 + MMJJ_RS03635 0.16 +4.5
677,623 - MMJJ_RS03635 0.19 -2.8
677,682 + MMJJ_RS03635 0.22 -1.2
677,720 - MMJJ_RS03635 0.24 +0.4

Or see this region's nucleotide sequence