Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03155

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03150 and MMJJ_RS03155 are separated by 19 nucleotidesMMJJ_RS03155 and MMJJ_RS03160 are separated by 304 nucleotides MMJJ_RS03150: MMJJ_RS03150 - 2-phospho-L-lactate transferase, at 594,619 to 595,548 _RS03150 MMJJ_RS03155: MMJJ_RS03155 - hypothetical protein, at 595,568 to 596,653 _RS03155 MMJJ_RS03160: MMJJ_RS03160 - winged helix-turn-helix transcriptional regulator, at 596,958 to 598,319 _RS03160 Position (kb) 595 596 597Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 594.755 kb on + strand, within MMJJ_RS03150at 594.763 kb on - strand, within MMJJ_RS03150at 594.764 kb on + strand, within MMJJ_RS03150at 594.776 kb on - strand, within MMJJ_RS03150at 595.044 kb on - strand, within MMJJ_RS03150at 595.389 kb on + strand, within MMJJ_RS03150at 595.422 kb on - strand, within MMJJ_RS03150at 595.432 kb on + strand, within MMJJ_RS03150at 595.432 kb on + strand, within MMJJ_RS03150at 595.433 kb on - strand, within MMJJ_RS03150at 595.433 kb on - strand, within MMJJ_RS03150at 595.433 kb on - strand, within MMJJ_RS03150at 595.434 kb on + strand, within MMJJ_RS03150at 595.434 kb on + strand, within MMJJ_RS03150at 595.434 kb on + strand, within MMJJ_RS03150at 595.434 kb on + strand, within MMJJ_RS03150at 595.434 kb on + strand, within MMJJ_RS03150at 595.437 kb on - strand, within MMJJ_RS03150at 595.454 kb on + strand, within MMJJ_RS03150at 595.563 kb on - strandat 595.563 kb on - strandat 595.595 kb on - strandat 595.596 kb on + strandat 595.596 kb on + strandat 595.596 kb on + strandat 595.600 kb on - strandat 595.601 kb on + strandat 595.618 kb on - strandat 595.624 kb on + strandat 595.656 kb on - strandat 595.711 kb on - strand, within MMJJ_RS03155at 595.711 kb on - strand, within MMJJ_RS03155at 595.712 kb on + strand, within MMJJ_RS03155at 595.712 kb on + strand, within MMJJ_RS03155at 595.717 kb on + strand, within MMJJ_RS03155at 595.795 kb on - strandat 595.796 kb on + strand, within MMJJ_RS03155at 595.799 kb on - strand, within MMJJ_RS03155at 595.800 kb on + strand, within MMJJ_RS03155at 595.800 kb on + strand, within MMJJ_RS03155at 595.803 kb on + strand, within MMJJ_RS03155at 595.832 kb on - strand, within MMJJ_RS03155at 595.856 kb on - strand, within MMJJ_RS03155at 595.859 kb on - strand, within MMJJ_RS03155at 595.925 kb on + strand, within MMJJ_RS03155at 595.931 kb on - strand, within MMJJ_RS03155at 595.952 kb on - strand, within MMJJ_RS03155at 595.953 kb on + strand, within MMJJ_RS03155at 595.960 kb on + strand, within MMJJ_RS03155at 595.960 kb on + strand, within MMJJ_RS03155at 595.986 kb on + strand, within MMJJ_RS03155at 596.024 kb on - strand, within MMJJ_RS03155at 596.029 kb on - strand, within MMJJ_RS03155at 596.052 kb on + strand, within MMJJ_RS03155at 596.060 kb on - strand, within MMJJ_RS03155at 596.065 kb on - strand, within MMJJ_RS03155at 596.065 kb on - strand, within MMJJ_RS03155at 596.066 kb on + strand, within MMJJ_RS03155at 596.067 kb on - strand, within MMJJ_RS03155at 596.068 kb on + strand, within MMJJ_RS03155at 596.081 kb on + strand, within MMJJ_RS03155at 596.153 kb on + strand, within MMJJ_RS03155at 596.155 kb on + strand, within MMJJ_RS03155at 596.167 kb on - strand, within MMJJ_RS03155at 596.192 kb on - strand, within MMJJ_RS03155at 596.193 kb on + strand, within MMJJ_RS03155at 596.247 kb on + strand, within MMJJ_RS03155at 596.247 kb on + strand, within MMJJ_RS03155at 596.299 kb on - strand, within MMJJ_RS03155at 596.377 kb on + strand, within MMJJ_RS03155at 596.384 kb on - strand, within MMJJ_RS03155at 596.385 kb on + strand, within MMJJ_RS03155at 596.388 kb on + strand, within MMJJ_RS03155at 596.439 kb on + strand, within MMJJ_RS03155at 596.439 kb on + strand, within MMJJ_RS03155at 596.441 kb on + strand, within MMJJ_RS03155at 596.536 kb on - strand, within MMJJ_RS03155at 596.636 kb on + strandat 596.636 kb on + strandat 596.636 kb on + strandat 596.636 kb on + strandat 596.642 kb on + strandat 596.656 kb on - strandat 596.683 kb on + strandat 596.685 kb on + strandat 596.689 kb on - strandat 596.724 kb on - strandat 596.725 kb on + strandat 596.778 kb on - strandat 596.778 kb on - strandat 596.787 kb on - strandat 596.787 kb on - strandat 596.788 kb on + strandat 596.803 kb on - strandat 596.803 kb on - strandat 596.804 kb on + strandat 596.822 kb on - strandat 596.829 kb on - strandat 596.829 kb on - strandat 596.829 kb on - strandat 596.829 kb on - strandat 596.830 kb on + strandat 596.831 kb on - strandat 596.831 kb on - strandat 596.831 kb on - strandat 596.831 kb on - strandat 596.832 kb on + strandat 596.832 kb on + strandat 596.832 kb on + strandat 596.834 kb on - strandat 596.834 kb on - strandat 596.834 kb on - strandat 596.834 kb on - strandat 596.834 kb on - strandat 596.835 kb on + strandat 596.835 kb on + strandat 596.835 kb on + strandat 596.835 kb on + strandat 596.835 kb on + strandat 596.835 kb on + strandat 596.835 kb on + strandat 596.837 kb on + strandat 596.837 kb on + strandat 596.840 kb on + strandat 596.842 kb on - strandat 596.842 kb on - strandat 596.843 kb on + strandat 596.843 kb on + strandat 596.884 kb on - strandat 596.884 kb on - strandat 596.890 kb on - strandat 596.890 kb on - strandat 596.891 kb on + strandat 596.899 kb on - strandat 596.899 kb on - strandat 596.901 kb on - strandat 596.901 kb on - strandat 596.901 kb on - strandat 596.901 kb on - strandat 596.902 kb on + strandat 596.902 kb on + strandat 596.902 kb on + strandat 596.902 kb on + strandat 596.902 kb on + strandat 596.902 kb on + strandat 596.902 kb on + strandat 596.902 kb on + strandat 596.906 kb on - strandat 596.909 kb on - strandat 596.910 kb on + strandat 596.914 kb on - strandat 596.915 kb on + strandat 596.915 kb on + strandat 596.922 kb on + strandat 596.944 kb on + strandat 596.950 kb on - strandat 596.950 kb on - strandat 596.973 kb on - strandat 596.974 kb on + strandat 596.974 kb on + strandat 596.974 kb on + strandat 597.000 kb on + strandat 597.077 kb on - strandat 597.087 kb on - strandat 597.088 kb on + strandat 597.141 kb on + strand, within MMJJ_RS03160at 597.165 kb on - strand, within MMJJ_RS03160at 597.166 kb on + strand, within MMJJ_RS03160at 597.166 kb on + strand, within MMJJ_RS03160at 597.167 kb on - strand, within MMJJ_RS03160at 597.167 kb on - strand, within MMJJ_RS03160at 597.168 kb on + strand, within MMJJ_RS03160at 597.232 kb on - strand, within MMJJ_RS03160at 597.277 kb on + strand, within MMJJ_RS03160at 597.363 kb on + strand, within MMJJ_RS03160at 597.383 kb on - strand, within MMJJ_RS03160at 597.384 kb on + strand, within MMJJ_RS03160at 597.393 kb on - strand, within MMJJ_RS03160at 597.406 kb on + strand, within MMJJ_RS03160at 597.420 kb on - strand, within MMJJ_RS03160at 597.440 kb on - strand, within MMJJ_RS03160at 597.451 kb on + strand, within MMJJ_RS03160at 597.613 kb on + strand, within MMJJ_RS03160at 597.614 kb on - strand, within MMJJ_RS03160at 597.615 kb on + strand, within MMJJ_RS03160at 597.646 kb on + strand, within MMJJ_RS03160

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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594,755 + MMJJ_RS03150 0.15 -1.5
594,763 - MMJJ_RS03150 0.15 +0.4
594,764 + MMJJ_RS03150 0.16 -1.1
594,776 - MMJJ_RS03150 0.17 -1.1
595,044 - MMJJ_RS03150 0.46 -1.8
595,389 + MMJJ_RS03150 0.83 -1.5
595,422 - MMJJ_RS03150 0.86 -1.1
595,432 + MMJJ_RS03150 0.87 -2.7
595,432 + MMJJ_RS03150 0.87 -2.4
595,433 - MMJJ_RS03150 0.88 -0.6
595,433 - MMJJ_RS03150 0.88 -1.1
595,433 - MMJJ_RS03150 0.88 -2.0
595,434 + MMJJ_RS03150 0.88 -2.9
595,434 + MMJJ_RS03150 0.88 -1.5
595,434 + MMJJ_RS03150 0.88 -1.8
595,434 + MMJJ_RS03150 0.88 -2.9
595,434 + MMJJ_RS03150 0.88 -2.9
595,437 - MMJJ_RS03150 0.88 +0.7
595,454 + MMJJ_RS03150 0.90 -2.3
595,563 - -1.2
595,563 - +1.4
595,595 - -2.5
595,596 + -4.8
595,596 + -0.9
595,596 + -1.9
595,600 - -3.4
595,601 + -0.4
595,618 - -3.0
595,624 + -1.6
595,656 - -4.1
595,711 - MMJJ_RS03155 0.13 -4.1
595,711 - MMJJ_RS03155 0.13 -1.5
595,712 + MMJJ_RS03155 0.13 -3.4
595,712 + MMJJ_RS03155 0.13 +0.4
595,717 + MMJJ_RS03155 0.14 -3.6
595,795 - +0.7
595,796 + MMJJ_RS03155 0.21 -2.6
595,799 - MMJJ_RS03155 0.21 -0.4
595,800 + MMJJ_RS03155 0.21 -1.1
595,800 + MMJJ_RS03155 0.21 -3.9
595,803 + MMJJ_RS03155 0.22 -2.8
595,832 - MMJJ_RS03155 0.24 -3.8
595,856 - MMJJ_RS03155 0.27 -3.1
595,859 - MMJJ_RS03155 0.27 -2.6
595,925 + MMJJ_RS03155 0.33 -2.1
595,931 - MMJJ_RS03155 0.33 -3.5
595,952 - MMJJ_RS03155 0.35 -0.6
595,953 + MMJJ_RS03155 0.35 +0.7
595,960 + MMJJ_RS03155 0.36 -3.6
595,960 + MMJJ_RS03155 0.36 -1.3
595,986 + MMJJ_RS03155 0.38 -2.9
596,024 - MMJJ_RS03155 0.42 -3.0
596,029 - MMJJ_RS03155 0.42 -3.5
596,052 + MMJJ_RS03155 0.45 -3.7
596,060 - MMJJ_RS03155 0.45 -1.5
596,065 - MMJJ_RS03155 0.46 -3.1
596,065 - MMJJ_RS03155 0.46 -0.6
596,066 + MMJJ_RS03155 0.46 -1.1
596,067 - MMJJ_RS03155 0.46 -5.3
596,068 + MMJJ_RS03155 0.46 +0.1
596,081 + MMJJ_RS03155 0.47 -3.8
596,153 + MMJJ_RS03155 0.54 -1.5
596,155 + MMJJ_RS03155 0.54 -1.8
596,167 - MMJJ_RS03155 0.55 -2.4
596,192 - MMJJ_RS03155 0.57 -1.9
596,193 + MMJJ_RS03155 0.58 -0.3
596,247 + MMJJ_RS03155 0.63 +0.7
596,247 + MMJJ_RS03155 0.63 -2.5
596,299 - MMJJ_RS03155 0.67 -4.1
596,377 + MMJJ_RS03155 0.74 -4.6
596,384 - MMJJ_RS03155 0.75 -2.3
596,385 + MMJJ_RS03155 0.75 -3.5
596,388 + MMJJ_RS03155 0.76 -2.0
596,439 + MMJJ_RS03155 0.80 -0.9
596,439 + MMJJ_RS03155 0.80 -2.6
596,441 + MMJJ_RS03155 0.80 -2.2
596,536 - MMJJ_RS03155 0.89 -2.2
596,636 + -3.1
596,636 + -2.6
596,636 + -3.3
596,636 + -2.3
596,642 + -2.9
596,656 - -1.9
596,683 + -1.1
596,685 + +0.1
596,689 - +4.2
596,724 - -3.6
596,725 + -2.1
596,778 - -0.3
596,778 - -3.5
596,787 - -3.8
596,787 - -0.3
596,788 + -3.8
596,803 - -1.1
596,803 - -0.1
596,804 + -1.0
596,822 - -3.2
596,829 - -2.2
596,829 - -2.9
596,829 - +0.4
596,829 - -2.0
596,830 + -0.3
596,831 - -4.4
596,831 - -1.3
596,831 - -2.9
596,831 - -3.6
596,832 + -2.4
596,832 + -1.1
596,832 + -2.4
596,834 - +0.9
596,834 - -3.1
596,834 - -1.8
596,834 - -2.7
596,834 - -2.9
596,835 + -2.4
596,835 + -0.3
596,835 + +0.4
596,835 + -2.4
596,835 + -1.3
596,835 + -2.0
596,835 + -1.6
596,837 + -3.3
596,837 + -2.4
596,840 + -0.2
596,842 - -3.0
596,842 - -2.4
596,843 + -0.9
596,843 + -2.5
596,884 - -0.9
596,884 - +0.8
596,890 - +0.3
596,890 - +0.2
596,891 + -0.7
596,899 - -0.5
596,899 - -1.1
596,901 - +4.3
596,901 - -0.9
596,901 - -0.3
596,901 - +1.3
596,902 + -1.0
596,902 + +2.0
596,902 + +1.2
596,902 + -0.0
596,902 + -1.9
596,902 + +1.5
596,902 + +0.3
596,902 + -0.3
596,906 - -1.3
596,909 - -2.8
596,910 + +0.6
596,914 - +3.3
596,915 + +0.1
596,915 + +1.3
596,922 + -1.8
596,944 + +0.7
596,950 - -1.9
596,950 - -0.3
596,973 - +2.1
596,974 + +1.1
596,974 + -2.2
596,974 + +0.1
597,000 + +0.3
597,077 - -3.1
597,087 - -1.2
597,088 + +1.3
597,141 + MMJJ_RS03160 0.13 -0.6
597,165 - MMJJ_RS03160 0.15 -2.6
597,166 + MMJJ_RS03160 0.15 -1.5
597,166 + MMJJ_RS03160 0.15 +1.7
597,167 - MMJJ_RS03160 0.15 -1.1
597,167 - MMJJ_RS03160 0.15 -1.3
597,168 + MMJJ_RS03160 0.15 -0.1
597,232 - MMJJ_RS03160 0.20 +1.3
597,277 + MMJJ_RS03160 0.23 -2.5
597,363 + MMJJ_RS03160 0.30 +0.3
597,383 - MMJJ_RS03160 0.31 +0.8
597,384 + MMJJ_RS03160 0.31 -2.1
597,393 - MMJJ_RS03160 0.32 -3.4
597,406 + MMJJ_RS03160 0.33 +2.7
597,420 - MMJJ_RS03160 0.34 -1.5
597,440 - MMJJ_RS03160 0.35 -1.6
597,451 + MMJJ_RS03160 0.36 -1.7
597,613 + MMJJ_RS03160 0.48 -1.0
597,614 - MMJJ_RS03160 0.48 -1.7
597,615 + MMJJ_RS03160 0.48 +0.7
597,646 + MMJJ_RS03160 0.51 -1.5

Or see this region's nucleotide sequence