Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01865

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01860 and MMJJ_RS01865 are separated by 147 nucleotidesMMJJ_RS01865 and MMJJ_RS01870 are separated by 135 nucleotides MMJJ_RS01860: MMJJ_RS01860 - tRNA guanosine(15) transglycosylase TgtA, at 356,203 to 358,152 _RS01860 MMJJ_RS01865: MMJJ_RS01865 - peptidyl-tRNA hydrolase Pth2, at 358,300 to 358,650 _RS01865 MMJJ_RS01870: MMJJ_RS01870 - methanogenesis marker 15 protein, at 358,786 to 360,021 _RS01870 Position (kb) 358 359Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 357.418 kb on - strand, within MMJJ_RS01860at 357.451 kb on - strand, within MMJJ_RS01860at 357.568 kb on - strand, within MMJJ_RS01860at 357.568 kb on - strand, within MMJJ_RS01860at 357.585 kb on + strand, within MMJJ_RS01860at 357.588 kb on - strand, within MMJJ_RS01860at 357.609 kb on - strand, within MMJJ_RS01860at 357.679 kb on + strandat 357.703 kb on + strand, within MMJJ_RS01860at 357.723 kb on - strand, within MMJJ_RS01860at 357.724 kb on + strand, within MMJJ_RS01860at 357.736 kb on - strand, within MMJJ_RS01860at 357.737 kb on + strand, within MMJJ_RS01860at 357.737 kb on + strand, within MMJJ_RS01860at 357.737 kb on + strand, within MMJJ_RS01860at 357.783 kb on - strand, within MMJJ_RS01860at 357.854 kb on + strand, within MMJJ_RS01860at 357.854 kb on + strand, within MMJJ_RS01860at 357.971 kb on - strandat 357.972 kb on + strandat 357.977 kb on + strandat 357.977 kb on + strandat 357.995 kb on + strandat 358.019 kb on + strandat 358.060 kb on - strandat 358.109 kb on + strandat 358.120 kb on + strandat 358.163 kb on - strandat 358.164 kb on + strandat 358.164 kb on + strandat 358.168 kb on - strandat 358.168 kb on - strandat 358.176 kb on + strandat 358.176 kb on + strandat 358.176 kb on + strandat 358.177 kb on - strandat 358.177 kb on - strandat 358.178 kb on + strandat 358.184 kb on - strandat 358.184 kb on - strandat 358.207 kb on - strandat 358.207 kb on - strandat 358.220 kb on - strandat 358.225 kb on - strandat 358.226 kb on + strandat 358.232 kb on - strandat 358.232 kb on - strandat 358.233 kb on + strandat 358.233 kb on + strandat 358.233 kb on + strandat 358.233 kb on + strandat 358.236 kb on - strandat 358.236 kb on - strandat 358.239 kb on - strandat 358.239 kb on - strandat 358.239 kb on - strandat 358.240 kb on + strandat 358.243 kb on - strandat 358.243 kb on - strandat 358.243 kb on - strandat 358.243 kb on - strandat 358.243 kb on - strandat 358.244 kb on + strandat 358.244 kb on + strandat 358.244 kb on + strandat 358.244 kb on + strandat 358.244 kb on + strandat 358.244 kb on + strandat 358.245 kb on - strandat 358.245 kb on - strandat 358.246 kb on + strandat 358.246 kb on + strandat 358.248 kb on - strandat 358.248 kb on - strandat 358.248 kb on - strandat 358.249 kb on + strandat 358.249 kb on + strandat 358.255 kb on - strandat 358.255 kb on - strandat 358.256 kb on + strandat 358.258 kb on + strandat 358.320 kb on - strandat 358.335 kb on + strand, within MMJJ_RS01865at 358.335 kb on + strand, within MMJJ_RS01865at 358.335 kb on + strand, within MMJJ_RS01865at 358.410 kb on + strand, within MMJJ_RS01865at 358.410 kb on + strand, within MMJJ_RS01865at 358.470 kb on + strand, within MMJJ_RS01865at 358.497 kb on + strand, within MMJJ_RS01865at 358.535 kb on - strand, within MMJJ_RS01865at 358.536 kb on + strand, within MMJJ_RS01865at 358.648 kb on - strandat 358.649 kb on + strandat 358.656 kb on + strandat 358.672 kb on - strandat 358.690 kb on + strandat 358.690 kb on + strandat 358.692 kb on - strandat 358.692 kb on - strandat 358.692 kb on - strandat 358.693 kb on + strandat 358.694 kb on - strandat 358.694 kb on - strandat 358.694 kb on - strandat 358.695 kb on + strandat 358.699 kb on + strandat 358.716 kb on - strandat 358.722 kb on + strandat 358.722 kb on + strandat 358.883 kb on - strandat 359.061 kb on + strandat 359.082 kb on + strand, within MMJJ_RS01870at 359.528 kb on - strand, within MMJJ_RS01870at 359.528 kb on - strand, within MMJJ_RS01870

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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357,418 - MMJJ_RS01860 0.62 +2.9
357,451 - MMJJ_RS01860 0.64 +4.4
357,568 - MMJJ_RS01860 0.70 +0.4
357,568 - MMJJ_RS01860 0.70 +3.6
357,585 + MMJJ_RS01860 0.71 -1.7
357,588 - MMJJ_RS01860 0.71 -0.7
357,609 - MMJJ_RS01860 0.72 -2.8
357,679 + -0.3
357,703 + MMJJ_RS01860 0.77 +1.4
357,723 - MMJJ_RS01860 0.78 -3.1
357,724 + MMJJ_RS01860 0.78 -0.6
357,736 - MMJJ_RS01860 0.79 +2.5
357,737 + MMJJ_RS01860 0.79 +4.1
357,737 + MMJJ_RS01860 0.79 +2.0
357,737 + MMJJ_RS01860 0.79 +0.5
357,783 - MMJJ_RS01860 0.81 +2.7
357,854 + MMJJ_RS01860 0.85 +3.5
357,854 + MMJJ_RS01860 0.85 +1.4
357,971 - -0.5
357,972 + -0.7
357,977 + -2.1
357,977 + +0.6
357,995 + -2.1
358,019 + +3.8
358,060 - +2.1
358,109 + +2.2
358,120 + +0.1
358,163 - -1.1
358,164 + +4.4
358,164 + +0.3
358,168 - +1.7
358,168 - +0.2
358,176 + -1.9
358,176 + +3.8
358,176 + -1.3
358,177 - +0.9
358,177 - +1.0
358,178 + +0.1
358,184 - +3.3
358,184 - +2.9
358,207 - -0.8
358,207 - -1.3
358,220 - +2.0
358,225 - -1.1
358,226 + +3.3
358,232 - +1.9
358,232 - -0.8
358,233 + -1.0
358,233 + +3.0
358,233 + +2.0
358,233 + +4.1
358,236 - +4.5
358,236 - -0.9
358,239 - +2.8
358,239 - -1.1
358,239 - +4.5
358,240 + +4.6
358,243 - +1.1
358,243 - +1.1
358,243 - +2.1
358,243 - +1.7
358,243 - +2.8
358,244 + +2.5
358,244 + +2.7
358,244 + +0.8
358,244 + +0.9
358,244 + +0.7
358,244 + +0.5
358,245 - -2.4
358,245 - +0.2
358,246 + -2.0
358,246 + +3.2
358,248 - +0.3
358,248 - +2.9
358,248 - -2.5
358,249 + +3.6
358,249 + +5.7
358,255 - +1.1
358,255 - +0.5
358,256 + +0.9
358,258 + -1.3
358,320 - -3.9
358,335 + MMJJ_RS01865 0.10 +0.1
358,335 + MMJJ_RS01865 0.10 -1.9
358,335 + MMJJ_RS01865 0.10 -4.0
358,410 + MMJJ_RS01865 0.31 -0.3
358,410 + MMJJ_RS01865 0.31 -2.2
358,470 + MMJJ_RS01865 0.48 -2.9
358,497 + MMJJ_RS01865 0.56 -4.1
358,535 - MMJJ_RS01865 0.67 -2.0
358,536 + MMJJ_RS01865 0.67 -2.2
358,648 - +0.8
358,649 + -0.3
358,656 + -0.6
358,672 - +1.3
358,690 + -0.8
358,690 + -1.5
358,692 - -1.3
358,692 - -0.2
358,692 - -0.5
358,693 + -1.5
358,694 - +3.2
358,694 - +2.8
358,694 - -1.3
358,695 + +0.9
358,699 + +3.9
358,716 - -0.9
358,722 + +3.4
358,722 + +0.9
358,883 - -0.5
359,061 + +3.0
359,082 + MMJJ_RS01870 0.24 -1.8
359,528 - MMJJ_RS01870 0.60 -0.6
359,528 - MMJJ_RS01870 0.60 -2.5

Or see this region's nucleotide sequence